data_3DX8 # _model_server_result.job_id HFzPAkmYFW7tHrS2SdLQCQ _model_server_result.datetime_utc '2024-12-04 15:56:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dx8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":3732}' # _entry.id 3DX8 # _exptl.entry_id 3DX8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DX8 _cell.length_a 50.776 _cell.length_b 82.351 _cell.length_c 110.138 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DX8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3DX8 _atom_sites.fract_transf_matrix[1][1] 0.019694 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00908 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL A 1 3731 3731 GOL GOL . E 4 GOL B 1 3732 3732 GOL GOL . F 5 HOH A 1 4001 4001 HOH HOH . F 5 HOH A 2 4002 4002 HOH HOH . F 5 HOH A 3 4004 4004 HOH HOH . F 5 HOH A 4 4005 4005 HOH HOH . F 5 HOH A 5 4006 4006 HOH HOH . F 5 HOH A 6 4007 4007 HOH HOH . F 5 HOH A 7 4009 4009 HOH HOH . F 5 HOH A 8 4010 4010 HOH HOH . F 5 HOH A 9 4011 4011 HOH HOH . F 5 HOH A 10 4012 4012 HOH HOH . F 5 HOH A 11 4013 4013 HOH HOH . F 5 HOH A 12 4015 4015 HOH HOH . F 5 HOH A 13 4016 4016 HOH HOH . F 5 HOH A 14 4017 4017 HOH HOH . F 5 HOH A 15 4018 4018 HOH HOH . F 5 HOH A 16 4020 4020 HOH HOH . F 5 HOH A 17 4021 4021 HOH HOH . F 5 HOH A 18 4022 4022 HOH HOH . F 5 HOH A 19 4023 4023 HOH HOH . F 5 HOH A 20 4025 4025 HOH HOH . F 5 HOH A 21 4026 4026 HOH HOH . F 5 HOH A 22 4027 4027 HOH HOH . F 5 HOH A 23 4028 4028 HOH HOH . F 5 HOH A 24 4030 4030 HOH HOH . F 5 HOH A 25 4031 4031 HOH HOH . F 5 HOH A 26 4032 4032 HOH HOH . F 5 HOH A 27 4033 4033 HOH HOH . F 5 HOH A 28 4034 4034 HOH HOH . F 5 HOH A 29 4036 4036 HOH HOH . F 5 HOH A 30 4037 4037 HOH HOH . F 5 HOH A 31 4038 4038 HOH HOH . F 5 HOH A 32 4039 4039 HOH HOH . F 5 HOH A 33 4040 4040 HOH HOH . F 5 HOH A 34 4041 4041 HOH HOH . F 5 HOH A 35 4043 4043 HOH HOH . F 5 HOH A 36 4044 4044 HOH HOH . F 5 HOH A 37 4045 4045 HOH HOH . F 5 HOH A 38 4049 4049 HOH HOH . F 5 HOH A 39 4050 4050 HOH HOH . F 5 HOH A 40 4051 4051 HOH HOH . F 5 HOH A 41 4053 4053 HOH HOH . F 5 HOH A 42 4054 4054 HOH HOH . F 5 HOH A 43 4056 4056 HOH HOH . F 5 HOH A 44 4057 4057 HOH HOH . F 5 HOH A 45 4058 4058 HOH HOH . F 5 HOH A 46 4059 4059 HOH HOH . F 5 HOH A 47 4062 4062 HOH HOH . F 5 HOH A 48 4063 4063 HOH HOH . F 5 HOH A 49 4064 4064 HOH HOH . F 5 HOH A 50 4065 4065 HOH HOH . F 5 HOH A 51 4066 4066 HOH HOH . F 5 HOH A 52 4067 4067 HOH HOH . F 5 HOH A 53 4068 4068 HOH HOH . F 5 HOH A 54 4070 4070 HOH HOH . F 5 HOH A 55 4071 4071 HOH HOH . F 5 HOH A 56 4072 4072 HOH HOH . F 5 HOH A 57 4073 4073 HOH HOH . F 5 HOH A 58 4074 4074 HOH HOH . F 5 HOH A 59 4075 4075 HOH HOH . F 5 HOH A 60 4077 4077 HOH HOH . F 5 HOH A 61 4078 4078 HOH HOH . F 5 HOH A 62 4079 4079 HOH HOH . F 5 HOH A 63 4080 4080 HOH HOH . F 5 HOH A 64 4081 4081 HOH HOH . F 5 HOH A 65 4082 4082 HOH HOH . F 5 HOH A 66 4083 4083 HOH HOH . F 5 HOH A 67 4084 4084 HOH HOH . F 5 HOH A 68 4086 4086 HOH HOH . F 5 HOH A 69 4088 4088 HOH HOH . F 5 HOH A 70 4089 4089 HOH HOH . F 5 HOH A 71 4090 4090 HOH HOH . F 5 HOH A 72 4092 4092 HOH HOH . F 5 HOH A 73 4093 4093 HOH HOH . F 5 HOH A 74 4094 4094 HOH HOH . F 5 HOH A 75 4095 4095 HOH HOH . F 5 HOH A 76 4097 4097 HOH HOH . F 5 HOH A 77 4098 4098 HOH HOH . F 5 HOH A 78 4099 4099 HOH HOH . F 5 HOH A 79 4100 4100 HOH HOH . F 5 HOH A 80 4101 4101 HOH HOH . F 5 HOH A 81 4102 4102 HOH HOH . F 5 HOH A 82 4104 4104 HOH HOH . F 5 HOH A 83 4105 4105 HOH HOH . F 5 HOH A 84 4106 4106 HOH HOH . F 5 HOH A 85 4107 4107 HOH HOH . F 5 HOH A 86 4108 4108 HOH HOH . F 5 HOH A 87 4109 4109 HOH HOH . F 5 HOH A 88 4110 4110 HOH HOH . F 5 HOH A 89 4112 4112 HOH HOH . F 5 HOH A 90 4113 4113 HOH HOH . F 5 HOH A 91 4114 4114 HOH HOH . F 5 HOH A 92 4115 4115 HOH HOH . F 5 HOH A 93 4118 4118 HOH HOH . F 5 HOH A 94 4119 4119 HOH HOH . F 5 HOH A 95 4120 4120 HOH HOH . F 5 HOH A 96 4121 4121 HOH HOH . F 5 HOH A 97 4125 4125 HOH HOH . F 5 HOH A 98 4126 4126 HOH HOH . F 5 HOH A 99 4127 4127 HOH HOH . F 5 HOH A 100 4128 4128 HOH HOH . F 5 HOH A 101 4129 4129 HOH HOH . F 5 HOH A 102 4130 4130 HOH HOH . F 5 HOH A 103 4131 4131 HOH HOH . F 5 HOH A 104 4133 4133 HOH HOH . F 5 HOH A 105 4134 4134 HOH HOH . F 5 HOH A 106 4135 4135 HOH HOH . F 5 HOH A 107 4136 4136 HOH HOH . F 5 HOH A 108 4138 4138 HOH HOH . F 5 HOH A 109 4139 4139 HOH HOH . F 5 HOH A 110 4140 4140 HOH HOH . F 5 HOH A 111 4141 4141 HOH HOH . F 5 HOH A 112 4142 4142 HOH HOH . F 5 HOH A 113 4143 4143 HOH HOH . F 5 HOH A 114 4144 4144 HOH HOH . F 5 HOH A 115 4145 4145 HOH HOH . F 5 HOH A 116 4146 4146 HOH HOH . F 5 HOH A 117 4147 4147 HOH HOH . F 5 HOH A 118 4148 4148 HOH HOH . F 5 HOH A 119 4149 4149 HOH HOH . F 5 HOH A 120 4150 4150 HOH HOH . F 5 HOH A 121 4152 4152 HOH HOH . F 5 HOH A 122 4153 4153 HOH HOH . F 5 HOH A 123 4154 4154 HOH HOH . F 5 HOH A 124 4156 4156 HOH HOH . F 5 HOH A 125 4157 4157 HOH HOH . F 5 HOH A 126 4159 4159 HOH HOH . F 5 HOH A 127 4161 4161 HOH HOH . F 5 HOH A 128 4162 4162 HOH HOH . F 5 HOH A 129 4163 4163 HOH HOH . F 5 HOH A 130 4165 4165 HOH HOH . F 5 HOH A 131 4166 4166 HOH HOH . F 5 HOH A 132 4167 4167 HOH HOH . F 5 HOH A 133 4169 4169 HOH HOH . F 5 HOH A 134 4171 4171 HOH HOH . F 5 HOH A 135 4172 4172 HOH HOH . F 5 HOH A 136 4173 4173 HOH HOH . F 5 HOH A 137 4174 4174 HOH HOH . F 5 HOH A 138 4175 4175 HOH HOH . F 5 HOH A 139 4176 4176 HOH HOH . F 5 HOH A 140 4177 4177 HOH HOH . F 5 HOH A 141 4178 4178 HOH HOH . F 5 HOH A 142 4179 4179 HOH HOH . F 5 HOH A 143 4180 4180 HOH HOH . F 5 HOH A 144 4181 4181 HOH HOH . F 5 HOH A 145 4182 4182 HOH HOH . F 5 HOH A 146 4183 4183 HOH HOH . F 5 HOH A 147 4184 4184 HOH HOH . F 5 HOH A 148 4185 4185 HOH HOH . F 5 HOH A 149 4186 4186 HOH HOH . F 5 HOH A 150 4187 4187 HOH HOH . F 5 HOH A 151 4188 4188 HOH HOH . F 5 HOH A 152 4190 4190 HOH HOH . F 5 HOH A 153 4191 4191 HOH HOH . F 5 HOH A 154 4192 4192 HOH HOH . F 5 HOH A 155 4193 4193 HOH HOH . F 5 HOH A 156 4196 4196 HOH HOH . F 5 HOH A 157 4199 4199 HOH HOH . F 5 HOH A 158 4202 4202 HOH HOH . F 5 HOH A 159 4203 4203 HOH HOH . F 5 HOH A 160 4207 4207 HOH HOH . F 5 HOH A 161 4208 4208 HOH HOH . F 5 HOH A 162 4210 4210 HOH HOH . F 5 HOH A 163 4211 4211 HOH HOH . F 5 HOH A 164 4212 4212 HOH HOH . F 5 HOH A 165 4213 4213 HOH HOH . F 5 HOH A 166 4214 4214 HOH HOH . F 5 HOH A 167 4215 4215 HOH HOH . F 5 HOH A 168 4216 4216 HOH HOH . F 5 HOH A 169 4217 4217 HOH HOH . F 5 HOH A 170 4219 4219 HOH HOH . F 5 HOH A 171 4220 4220 HOH HOH . F 5 HOH A 172 4223 4223 HOH HOH . F 5 HOH A 173 4224 4224 HOH HOH . G 5 HOH B 1 4003 4003 HOH HOH . G 5 HOH B 2 4008 4008 HOH HOH . G 5 HOH B 3 4014 4014 HOH HOH . G 5 HOH B 4 4019 4019 HOH HOH . G 5 HOH B 5 4024 4024 HOH HOH . G 5 HOH B 6 4029 4029 HOH HOH . G 5 HOH B 7 4035 4035 HOH HOH . G 5 HOH B 8 4042 4042 HOH HOH . G 5 HOH B 9 4046 4046 HOH HOH . G 5 HOH B 10 4047 4047 HOH HOH . G 5 HOH B 11 4048 4048 HOH HOH . G 5 HOH B 12 4052 4052 HOH HOH . G 5 HOH B 13 4055 4055 HOH HOH . G 5 HOH B 14 4060 4060 HOH HOH . G 5 HOH B 15 4061 4061 HOH HOH . G 5 HOH B 16 4069 4069 HOH HOH . G 5 HOH B 17 4076 4076 HOH HOH . G 5 HOH B 18 4085 4085 HOH HOH . G 5 HOH B 19 4087 4087 HOH HOH . G 5 HOH B 20 4091 4091 HOH HOH . G 5 HOH B 21 4096 4096 HOH HOH . G 5 HOH B 22 4103 4103 HOH HOH . G 5 HOH B 23 4111 4111 HOH HOH . G 5 HOH B 24 4116 4116 HOH HOH . G 5 HOH B 25 4117 4117 HOH HOH . G 5 HOH B 26 4122 4122 HOH HOH . G 5 HOH B 27 4123 4123 HOH HOH . G 5 HOH B 28 4124 4124 HOH HOH . G 5 HOH B 29 4132 4132 HOH HOH . G 5 HOH B 30 4137 4137 HOH HOH . G 5 HOH B 31 4151 4151 HOH HOH . G 5 HOH B 32 4155 4155 HOH HOH . G 5 HOH B 33 4158 4158 HOH HOH . G 5 HOH B 34 4160 4160 HOH HOH . G 5 HOH B 35 4164 4164 HOH HOH . G 5 HOH B 36 4170 4170 HOH HOH . G 5 HOH B 37 4189 4189 HOH HOH . G 5 HOH B 38 4194 4194 HOH HOH . G 5 HOH B 39 4195 4195 HOH HOH . G 5 HOH B 40 4197 4197 HOH HOH . G 5 HOH B 41 4198 4198 HOH HOH . G 5 HOH B 42 4200 4200 HOH HOH . G 5 HOH B 43 4201 4201 HOH HOH . G 5 HOH B 44 4204 4204 HOH HOH . G 5 HOH B 45 4205 4205 HOH HOH . G 5 HOH B 46 4218 4218 HOH HOH . G 5 HOH B 47 4222 4222 HOH HOH . H 5 HOH C 1 4168 4168 HOH HOH . H 5 HOH C 2 4206 4206 HOH HOH . H 5 HOH C 3 4209 4209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 1.629 3.214 -1.483 1 85.63 ? C1 GOL 3732 B 1 HETATM 2 O O1 GOL . . . E 4 1.628 4.437 -0.779 1 85.71 ? O1 GOL 3732 B 1 HETATM 3 C C2 GOL . . . E 4 0.344 2.429 -1.22 1 85.62 ? C2 GOL 3732 B 1 HETATM 4 O O2 GOL . . . E 4 -0.7 2.917 -2.034 1 83.37 ? O2 GOL 3732 B 1 HETATM 5 C C3 GOL . . . E 4 0.573 0.946 -1.503 1 86.29 ? C3 GOL 3732 B 1 HETATM 6 O O3 GOL . . . E 4 -0.654 0.298 -1.766 1 86.17 ? O3 GOL 3732 B 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #