data_3DXJ # _model_server_result.job_id 8m_589CLObtJlasQCrcJhQ _model_server_result.datetime_utc '2024-11-01 13:37:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dxj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":1527}' # _entry.id 3DXJ # _exptl.entry_id 3DXJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3DXJ _cell.length_a 235.09 _cell.length_b 235.09 _cell.length_c 250.88 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DXJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,M,N,O,P,Q,R,S,T,U,AA,BA,CA,DA,EA 1 1 G,H,I,J,K,L,V,W,X,Y,Z,FA,GA,HA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 N N N ? 7 S N N ? 7 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD2 ASP 168 B ASP 168 1_555 N MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc2 N MG MG . B MG 701 1_555 D O LYS 840 D LYS 840 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc3 D SG CYS 58 D CYS 58 1_555 Q ZN ZN . D ZN 1525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc4 D SG CYS 60 D CYS 60 1_555 Q ZN ZN . D ZN 1525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc5 D SG CYS 73 D CYS 73 1_555 Q ZN ZN . D ZN 1525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc6 D SG CYS 76 D CYS 76 1_555 Q ZN ZN . D ZN 1525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc7 D SG CYS 1112 D CYS 1112 1_555 R ZN ZN . D ZN 1526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc8 D SG CYS 1194 D CYS 1194 1_555 R ZN ZN . D ZN 1526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc9 D SG CYS 1201 D CYS 1201 1_555 R ZN ZN . D ZN 1526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc10 D SG CYS 1204 D CYS 1204 1_555 R ZN ZN . D ZN 1526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc11 J SG CYS 58 N CYS 58 1_555 W ZN ZN . N ZN 1525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc12 J SG CYS 60 N CYS 60 1_555 W ZN ZN . N ZN 1525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc13 J SG CYS 73 N CYS 73 1_555 W ZN ZN . N ZN 1525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc14 J SG CYS 76 N CYS 76 1_555 W ZN ZN . N ZN 1525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc15 J OD1 ASP 741 N ASP 741 1_555 Y MG MG . N MG 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc16 J OD2 ASP 743 N ASP 743 1_555 Y MG MG . N MG 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc17 J SG CYS 1112 N CYS 1112 1_555 X ZN ZN . N ZN 1526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc18 J SG CYS 1194 N CYS 1194 1_555 X ZN ZN . N ZN 1526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc19 J SG CYS 1201 N CYS 1201 1_555 X ZN ZN . N ZN 1526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc20 J SG CYS 1204 N CYS 1204 1_555 X ZN ZN . N ZN 1526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3DXJ _atom_sites.fract_transf_matrix[1][1] 0.004254 _atom_sites.fract_transf_matrix[1][2] 0.002456 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003986 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 6 PO4 A 1 316 316 PO4 PO4 . N 7 MG B 1 701 701 MG MG . O 8 MPD C 1 1120 1120 MPD MPD . P 8 MPD C 1 1121 1121 MPD MPD . Q 9 ZN D 1 1525 1525 ZN ZN . R 9 ZN D 1 1526 1526 ZN ZN . S 7 MG D 1 1527 1527 MG MG . T 6 PO4 D 1 1528 1528 PO4 PO4 . U 10 NE6 D 1 1529 1529 NE6 NE6 . V 8 MPD M 1 1120 1120 MPD MPD . W 9 ZN N 1 1525 1525 ZN ZN . X 9 ZN N 1 1526 1526 ZN ZN . Y 7 MG N 1 1527 1527 MG MG . Z 10 NE6 N 1 1528 1528 NE6 NE6 . AA 11 HOH A 1 317 317 HOH HOH . BA 11 HOH B 1 702 702 HOH HOH . CA 11 HOH C 1 1122 1122 HOH HOH . CA 11 HOH C 2 1123 1123 HOH HOH . CA 11 HOH C 3 1124 1124 HOH HOH . CA 11 HOH C 4 1125 1125 HOH HOH . CA 11 HOH C 5 1126 1126 HOH HOH . CA 11 HOH C 6 1127 1127 HOH HOH . CA 11 HOH C 7 1128 1128 HOH HOH . DA 11 HOH D 1 1530 1530 HOH HOH . DA 11 HOH D 2 1531 1531 HOH HOH . DA 11 HOH D 3 1532 1532 HOH HOH . DA 11 HOH D 4 1533 1533 HOH HOH . DA 11 HOH D 5 1534 1534 HOH HOH . DA 11 HOH D 6 1535 1535 HOH HOH . DA 11 HOH D 7 1536 1536 HOH HOH . DA 11 HOH D 8 1537 1537 HOH HOH . DA 11 HOH D 9 1538 1538 HOH HOH . DA 11 HOH D 10 1539 1539 HOH HOH . EA 11 HOH F 1 424 424 HOH HOH . FA 11 HOH M 1 1121 1121 HOH HOH . FA 11 HOH M 2 1122 1122 HOH HOH . FA 11 HOH M 3 1123 1123 HOH HOH . FA 11 HOH M 4 1124 1124 HOH HOH . FA 11 HOH M 5 1125 1125 HOH HOH . GA 11 HOH N 1 1529 1529 HOH HOH . GA 11 HOH N 2 1530 1530 HOH HOH . GA 11 HOH N 3 1531 1531 HOH HOH . GA 11 HOH N 4 1532 1532 HOH HOH . HA 11 HOH O 1 100 100 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Y _atom_site.label_entity_id 7 _atom_site.Cartn_x 136.144 _atom_site.Cartn_y -35.259 _atom_site.Cartn_z 40.059 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 56.88 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1527 _atom_site.auth_asym_id N _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 64 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #