data_3DXJ
#
_model_server_result.job_id            AMZEDek4XEE9O1gx4mGX4g 
_model_server_result.datetime_utc      '2024-11-01 13:37:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dxj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":1528}' 
#
_entry.id    3DXJ 
#
_exptl.entry_id    3DXJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              417.495 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl [(1E,5R)-5-{(3S)-3-[(2E,4E)-2,5-dimethylocta-2,4-dienoyl]-2,4-dioxo-3,4-dihydro-2H-pyran-6-yl}hexylidene]carbamate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3DXJ 
_cell.length_a            235.09 
_cell.length_b            235.09 
_cell.length_c            250.88 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DXJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,M,N,O,P,Q,R,S,T,U,AA,BA,CA,DA,EA 1 1 
G,H,I,J,K,L,V,W,X,Y,Z,FA,GA,HA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 10 U N N 
? 10 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OD2 ASP 168 B ASP 168 1_555 N MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc2 N MG MG . B MG 701 1_555 D O LYS 840 D LYS 840 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? 
metalc ? metalc3 D SG CYS 58 D CYS 58 1_555 Q ZN ZN . D ZN 1525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc4 D SG CYS 60 D CYS 60 1_555 Q ZN ZN . D ZN 1525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc5 D SG CYS 73 D CYS 73 1_555 Q ZN ZN . D ZN 1525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc6 D SG CYS 76 D CYS 76 1_555 Q ZN ZN . D ZN 1525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? 
metalc ? metalc7 D SG CYS 1112 D CYS 1112 1_555 R ZN ZN . D ZN 1526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc8 D SG CYS 1194 D CYS 1194 1_555 R ZN ZN . D ZN 1526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc9 D SG CYS 1201 D CYS 1201 1_555 R ZN ZN . D ZN 1526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc10 D SG CYS 1204 D CYS 1204 1_555 R ZN ZN . D ZN 1526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc11 J SG CYS 58 N CYS 58 1_555 W ZN ZN . N ZN 1525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc12 J SG CYS 60 N CYS 60 1_555 W ZN ZN . N ZN 1525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc13 J SG CYS 73 N CYS 73 1_555 W ZN ZN . N ZN 1525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc14 J SG CYS 76 N CYS 76 1_555 W ZN ZN . N ZN 1525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc15 J OD1 ASP 741 N ASP 741 1_555 Y MG MG . N MG 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc16 J OD2 ASP 743 N ASP 743 1_555 Y MG MG . N MG 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc17 J SG CYS 1112 N CYS 1112 1_555 X ZN ZN . N ZN 1526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc18 J SG CYS 1194 N CYS 1194 1_555 X ZN ZN . N ZN 1526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc19 J SG CYS 1201 N CYS 1201 1_555 X ZN ZN . N ZN 1526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc20 J SG CYS 1204 N CYS 1204 1_555 X ZN ZN . N ZN 1526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
#
_chem_comp.formula           'C23 H31 N O6' 
_chem_comp.formula_weight    417.495 
_chem_comp.id                NE6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'methyl [(1E,5R)-5-{(3S)-3-[(2E,4E)-2,5-dimethylocta-2,4-dienoyl]-2,4-dioxo-3,4-dihydro-2H-pyran-6-yl}hexylidene]carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 O1 NE6 sing 258 n n 
C2 O1 NE6 sing 259 n n 
C3 C2 NE6 sing 260 n n 
C2 O2 NE6 doub 261 n n 
C4 C3 NE6 sing 262 n n 
C15 C3 NE6 sing 263 n n 
C3 H3 NE6 sing 264 n n 
O4 C4 NE6 doub 265 n n 
C4 C5 NE6 sing 266 n n 
C5 C6 NE6 doub 267 n n 
C5 H5 NE6 sing 268 n n 
C6 C7 NE6 sing 269 n n 
C8 C7 NE6 sing 270 n n 
C7 C9 NE6 sing 271 n n 
C7 H7 NE6 sing 272 n n 
C8 H8 NE6 sing 273 n n 
C8 H8A NE6 sing 274 n n 
C8 H8B NE6 sing 275 n n 
C9 C10 NE6 sing 276 n n 
C9 H9 NE6 sing 277 n n 
C9 H9A NE6 sing 278 n n 
C10 C11 NE6 sing 279 n n 
C10 H10 NE6 sing 280 n n 
C10 H10A NE6 sing 281 n n 
C11 C12 NE6 sing 282 n n 
C11 H11 NE6 sing 283 n n 
C11 H11A NE6 sing 284 n n 
C12 N12 NE6 doub 285 n n 
C12 H12 NE6 sing 286 n n 
N12 C13 NE6 sing 287 n n 
O13 C13 NE6 doub 288 n n 
C13 O14 NE6 sing 289 n n 
O14 C14 NE6 sing 290 n n 
C14 H14 NE6 sing 291 e n 
C14 H14A NE6 sing 292 n n 
C14 H14B NE6 sing 293 n n 
O15 C15 NE6 doub 294 n n 
C15 C16 NE6 sing 295 n n 
C17 C16 NE6 sing 296 n n 
C16 C18 NE6 doub 297 n n 
C17 H17 NE6 sing 298 e n 
C17 H17A NE6 sing 299 n n 
C17 H17B NE6 sing 300 n n 
C18 C19 NE6 sing 301 n n 
C18 H18 NE6 sing 302 n n 
C19 C20 NE6 doub 303 n n 
C19 H19 NE6 sing 304 n n 
C20 C21 NE6 sing 305 n n 
C20 C22 NE6 sing 306 n n 
C21 H21 NE6 sing 307 n n 
C21 H21A NE6 sing 308 n n 
C21 H21B NE6 sing 309 n n 
C22 C23 NE6 sing 310 n n 
C22 H22 NE6 sing 311 n n 
C22 H22A NE6 sing 312 n n 
C23 C24 NE6 sing 313 n n 
C23 H23 NE6 sing 314 n n 
C23 H23A NE6 sing 315 n n 
C24 H24 NE6 sing 316 n n 
C24 H24A NE6 sing 317 n n 
C24 H24B NE6 sing 318 n n 
#
_atom_sites.entry_id                     3DXJ 
_atom_sites.fract_transf_matrix[1][1]    0.004254 
_atom_sites.fract_transf_matrix[1][2]    0.002456 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004912 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003986 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 6 PO4 A 1 316 316 PO4 PO4 . 
N 7 MG B 1 701 701 MG MG . 
O 8 MPD C 1 1120 1120 MPD MPD . 
P 8 MPD C 1 1121 1121 MPD MPD . 
Q 9 ZN D 1 1525 1525 ZN ZN . 
R 9 ZN D 1 1526 1526 ZN ZN . 
S 7 MG D 1 1527 1527 MG MG . 
T 6 PO4 D 1 1528 1528 PO4 PO4 . 
U 10 NE6 D 1 1529 1529 NE6 NE6 . 
V 8 MPD M 1 1120 1120 MPD MPD . 
W 9 ZN N 1 1525 1525 ZN ZN . 
X 9 ZN N 1 1526 1526 ZN ZN . 
Y 7 MG N 1 1527 1527 MG MG . 
Z 10 NE6 N 1 1528 1528 NE6 NE6 . 
AA 11 HOH A 1 317 317 HOH HOH . 
BA 11 HOH B 1 702 702 HOH HOH . 
CA 11 HOH C 1 1122 1122 HOH HOH . 
CA 11 HOH C 2 1123 1123 HOH HOH . 
CA 11 HOH C 3 1124 1124 HOH HOH . 
CA 11 HOH C 4 1125 1125 HOH HOH . 
CA 11 HOH C 5 1126 1126 HOH HOH . 
CA 11 HOH C 6 1127 1127 HOH HOH . 
CA 11 HOH C 7 1128 1128 HOH HOH . 
DA 11 HOH D 1 1530 1530 HOH HOH . 
DA 11 HOH D 2 1531 1531 HOH HOH . 
DA 11 HOH D 3 1532 1532 HOH HOH . 
DA 11 HOH D 4 1533 1533 HOH HOH . 
DA 11 HOH D 5 1534 1534 HOH HOH . 
DA 11 HOH D 6 1535 1535 HOH HOH . 
DA 11 HOH D 7 1536 1536 HOH HOH . 
DA 11 HOH D 8 1537 1537 HOH HOH . 
DA 11 HOH D 9 1538 1538 HOH HOH . 
DA 11 HOH D 10 1539 1539 HOH HOH . 
EA 11 HOH F 1 424 424 HOH HOH . 
FA 11 HOH M 1 1121 1121 HOH HOH . 
FA 11 HOH M 2 1122 1122 HOH HOH . 
FA 11 HOH M 3 1123 1123 HOH HOH . 
FA 11 HOH M 4 1124 1124 HOH HOH . 
FA 11 HOH M 5 1125 1125 HOH HOH . 
GA 11 HOH N 1 1529 1529 HOH HOH . 
GA 11 HOH N 2 1530 1530 HOH HOH . 
GA 11 HOH N 3 1531 1531 HOH HOH . 
GA 11 HOH N 4 1532 1532 HOH HOH . 
HA 11 HOH O 1 100 100 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 NE6 . . . Z 10 163.881 -30.225 43.733 1 84.69 ? O1 NE6 1528 N 1 
HETATM 2 C C2 NE6 . . . Z 10 164.773 -29.168 43.656 1 81.78 ? C2 NE6 1528 N 1 
HETATM 3 C C3 NE6 . . . Z 10 164.177 -27.813 43.452 1 81.52 ? C3 NE6 1528 N 1 
HETATM 4 O O2 NE6 . . . Z 10 165.989 -29.355 43.757 1 78.65 ? O2 NE6 1528 N 1 
HETATM 5 C C4 NE6 . . . Z 10 162.803 -27.674 43.345 1 80.88 ? C4 NE6 1528 N 1 
HETATM 6 C C5 NE6 . . . Z 10 161.914 -28.821 43.433 1 81.66 ? C5 NE6 1528 N 1 
HETATM 7 C C6 NE6 . . . Z 10 162.449 -30.064 43.624 1 84.51 ? C6 NE6 1528 N 1 
HETATM 8 C C7 NE6 . . . Z 10 161.689 -31.386 43.75 1 87.56 ? C7 NE6 1528 N 1 
HETATM 9 C C8 NE6 . . . Z 10 160.488 -31.467 42.785 1 88.33 ? C8 NE6 1528 N 1 
HETATM 10 C C9 NE6 . . . Z 10 161.182 -31.635 45.201 1 91.08 ? C9 NE6 1528 N 1 
HETATM 11 C C10 NE6 . . . Z 10 162.009 -32.674 46.007 1 90.73 ? C10 NE6 1528 N 1 
HETATM 12 C C11 NE6 . . . Z 10 161.321 -33.031 47.307 1 87.48 ? C11 NE6 1528 N 1 
HETATM 13 C C12 NE6 . . . Z 10 161.673 -34.059 48.1 1 82.2 ? C12 NE6 1528 N 1 
HETATM 14 C C13 NE6 . . . Z 10 161.261 -35.332 50.152 1 74.46 ? C13 NE6 1528 N 1 
HETATM 15 C C14 NE6 . . . Z 10 160.608 -36.352 52.292 1 78.73 ? C14 NE6 1528 N 1 
HETATM 16 C C15 NE6 . . . Z 10 165.076 -26.627 43.367 1 85.37 ? C15 NE6 1528 N 1 
HETATM 17 C C16 NE6 . . . Z 10 165.885 -26.26 44.604 1 87.57 ? C16 NE6 1528 N 1 
HETATM 18 C C17 NE6 . . . Z 10 167.373 -26.225 44.334 1 89.47 ? C17 NE6 1528 N 1 
HETATM 19 C C18 NE6 . . . Z 10 165.244 -26.016 45.787 1 87.38 ? C18 NE6 1528 N 1 
HETATM 20 C C19 NE6 . . . Z 10 165.83 -25.655 47.081 1 89.1 ? C19 NE6 1528 N 1 
HETATM 21 C C20 NE6 . . . Z 10 165.161 -25.425 48.254 1 89.4 ? C20 NE6 1528 N 1 
HETATM 22 C C21 NE6 . . . Z 10 163.672 -25.503 48.447 1 90.44 ? C21 NE6 1528 N 1 
HETATM 23 C C22 NE6 . . . Z 10 165.926 -25.063 49.525 1 86.39 ? C22 NE6 1528 N 1 
HETATM 24 C C23 NE6 . . . Z 10 165.693 -23.613 49.972 1 83.84 ? C23 NE6 1528 N 1 
HETATM 25 C C24 NE6 . . . Z 10 166.456 -23.303 51.244 1 84.81 ? C24 NE6 1528 N 1 
HETATM 26 N N12 NE6 . . . Z 10 160.989 -34.307 49.261 1 75.51 ? N12 NE6 1528 N 1 
HETATM 27 O O14 NE6 . . . Z 10 160.441 -35.378 51.241 1 75.48 ? O14 NE6 1528 N 1 
HETATM 28 O O13 NE6 . . . Z 10 162.161 -36.163 50.02 1 72.76 ? O13 NE6 1528 N 1 
HETATM 29 O O4 NE6 . . . Z 10 162.171 -26.463 43.153 1 77.95 ? O4 NE6 1528 N 1 
HETATM 30 O O15 NE6 . . . Z 10 165.172 -25.974 42.327 1 88.04 ? O15 NE6 1528 N 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    67 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           30 
#