data_3DXK # _model_server_result.job_id SpfKKiC-NdDpzAUDCdYAqA _model_server_result.datetime_utc '2024-12-26 19:10:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dxk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":395}' # _entry.id 3DXK # _exptl.entry_id 3DXK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.376 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-(2-methyl-1H-indol-3-yl)ethyl]thiophene-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DXK _cell.length_a 111.598 _cell.length_b 130.657 _cell.length_c 203.961 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H16 N2 O S' _chem_comp.formula_weight 284.376 _chem_comp.id N23 _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-(2-methyl-1H-indol-3-yl)ethyl]thiophene-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAO CAB N23 sing 237 n n CAB NAA N23 sing 238 n y CAB CAC N23 doub 239 n y NAA CAE N23 sing 240 n y CAE CAR N23 doub 241 n y CAE CAD N23 sing 242 n y CAR CAT N23 sing 243 n y CAT CAS N23 doub 244 n y CAS CAQ N23 sing 245 n y CAQ CAD N23 doub 246 n y CAD CAC N23 sing 247 n y CAC CAN N23 sing 248 n n CAN CAP N23 sing 249 n n CAP NAM N23 sing 250 n n NAM CAG N23 sing 251 n n CAG OAK N23 doub 252 n n CAG CAF N23 sing 253 n n CAF CAI N23 doub 254 n y CAF SAH N23 sing 255 n y CAI CAL N23 sing 256 n y CAL CAJ N23 doub 257 n y CAJ SAH N23 sing 258 n y CAO HAO N23 sing 259 n n CAO HAOA N23 sing 260 n n CAO HAOB N23 sing 261 n n NAA HNAA N23 sing 262 n n CAR HAR N23 sing 263 n n CAT HAT N23 sing 264 n n CAS HAS N23 sing 265 n n CAQ HAQ N23 sing 266 n n CAN HAN N23 sing 267 n n CAN HANA N23 sing 268 n n CAP HAP N23 sing 269 n n CAP HAPA N23 sing 270 n n NAM HNAM N23 sing 271 n n CAI HAI N23 sing 272 n n CAL HAL N23 sing 273 n n CAJ HAJ N23 sing 274 n n # _atom_sites.entry_id 3DXK _atom_sites.fract_transf_matrix[1][1] 0.008961 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007654 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004903 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 8 N23 B 1 395 1 N23 N23 . I 9 HOH A 1 419 7 HOH TIP . I 9 HOH A 2 420 8 HOH TIP . I 9 HOH A 3 421 13 HOH TIP . I 9 HOH A 4 422 14 HOH TIP . I 9 HOH A 5 423 20 HOH TIP . I 9 HOH A 6 424 24 HOH TIP . I 9 HOH A 7 425 31 HOH TIP . I 9 HOH A 8 426 41 HOH TIP . J 9 HOH B 1 396 11 HOH TIP . J 9 HOH B 2 397 32 HOH TIP . J 9 HOH B 3 398 37 HOH TIP . K 9 HOH C 1 373 6 HOH TIP . K 9 HOH C 2 374 17 HOH TIP . K 9 HOH C 3 375 19 HOH TIP . K 9 HOH C 4 376 23 HOH TIP . K 9 HOH C 5 377 27 HOH TIP . K 9 HOH C 6 378 36 HOH TIP . K 9 HOH C 7 379 42 HOH TIP . L 9 HOH D 1 301 1 HOH TIP . L 9 HOH D 2 302 5 HOH TIP . L 9 HOH D 3 303 9 HOH TIP . L 9 HOH D 4 304 21 HOH TIP . L 9 HOH D 5 305 22 HOH TIP . L 9 HOH D 6 306 26 HOH TIP . L 9 HOH D 7 307 28 HOH TIP . L 9 HOH D 8 308 29 HOH TIP . L 9 HOH D 9 309 30 HOH TIP . L 9 HOH D 10 310 33 HOH TIP . M 9 HOH E 1 179 18 HOH TIP . N 9 HOH F 1 169 2 HOH TIP . N 9 HOH F 2 170 3 HOH TIP . N 9 HOH F 3 171 4 HOH TIP . N 9 HOH F 4 172 10 HOH TIP . N 9 HOH F 5 173 12 HOH TIP . N 9 HOH F 6 174 15 HOH TIP . N 9 HOH F 7 175 16 HOH TIP . N 9 HOH F 8 176 34 HOH TIP . N 9 HOH F 9 177 35 HOH TIP . N 9 HOH F 10 178 38 HOH TIP . N 9 HOH F 11 179 39 HOH TIP . N 9 HOH F 12 180 40 HOH TIP . O 9 HOH G 1 152 25 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAO N23 . . . H 8 2.017 15.541 38.123 1 69.53 ? CAO N23 395 B 1 HETATM 2 C CAB N23 . . . H 8 0.847 15.696 37.151 1 71.34 ? CAB N23 395 B 1 HETATM 3 N NAA N23 . . . H 8 0.283 14.703 36.46 1 70.86 ? NAA N23 395 B 1 HETATM 4 C CAE N23 . . . H 8 -0.758 15.193 35.794 1 71.12 ? CAE N23 395 B 1 HETATM 5 C CAR N23 . . . H 8 -1.663 14.568 34.94 1 70.33 ? CAR N23 395 B 1 HETATM 6 C CAT N23 . . . H 8 -2.687 15.302 34.357 1 70.19 ? CAT N23 395 B 1 HETATM 7 C CAS N23 . . . H 8 -2.818 16.659 34.655 1 70.65 ? CAS N23 395 B 1 HETATM 8 C CAQ N23 . . . H 8 -1.928 17.289 35.513 1 70.52 ? CAQ N23 395 B 1 HETATM 9 C CAD N23 . . . H 8 -0.887 16.552 36.072 1 71.55 ? CAD N23 395 B 1 HETATM 10 C CAC N23 . . . H 8 0.146 16.876 36.944 1 71.86 ? CAC N23 395 B 1 HETATM 11 C CAN N23 . . . H 8 0.506 18.274 37.452 1 72.68 ? CAN N23 395 B 1 HETATM 12 C CAP N23 . . . H 8 -0.248 18.577 38.747 1 76.03 ? CAP N23 395 B 1 HETATM 13 N NAM N23 . . . H 8 0.099 17.544 39.736 1 78.73 ? NAM N23 395 B 1 HETATM 14 C CAG N23 . . . H 8 0.963 17.787 40.71 1 80.78 ? CAG N23 395 B 1 HETATM 15 O OAK N23 . . . H 8 1.526 18.872 40.885 1 79.22 ? OAK N23 395 B 1 HETATM 16 C CAF N23 . . . H 8 1.204 16.597 41.64 1 82.14 ? CAF N23 395 B 1 HETATM 17 C CAI N23 . . . H 8 0.527 15.455 41.575 1 83.2 ? CAI N23 395 B 1 HETATM 18 C CAL N23 . . . H 8 0.797 14.592 42.562 1 84.75 ? CAL N23 395 B 1 HETATM 19 C CAJ N23 . . . H 8 1.704 14.966 43.465 1 84.96 ? CAJ N23 395 B 1 HETATM 20 S SAH N23 . . . H 8 2.228 16.525 43.009 1 86.8 ? SAH N23 395 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #