data_3DY6 # _model_server_result.job_id qEinDcct2OoAgGfA4CF-WA _model_server_result.datetime_utc '2024-12-26 12:30:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dy6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3DY6 # _exptl.entry_id 3DY6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.3 _cell.angle_gamma 90 _cell.entry_id 3DY6 _cell.length_a 39.886 _cell.length_b 94.324 _cell.length_c 97.066 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DY6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 1 2 B,E,G 2 1 A,C,D,F 2 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 25.873921 47.162 96.04931 3 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -39.886 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3DY6 _atom_sites.fract_transf_matrix[1][1] 0.025071 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003659 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010602 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IOD A 1 1 1 IOD I1 . D 3 DY6 A 1 478 1 DY6 LIG . E 3 DY6 B 1 1 1 DY6 LIG . F 4 HOH A 1 479 1 HOH HOH . F 4 HOH A 2 480 2 HOH HOH . F 4 HOH A 3 481 3 HOH HOH . F 4 HOH A 4 482 4 HOH HOH . F 4 HOH A 5 483 5 HOH HOH . F 4 HOH A 6 484 6 HOH HOH . F 4 HOH A 7 485 7 HOH HOH . F 4 HOH A 8 486 9 HOH HOH . F 4 HOH A 9 487 10 HOH HOH . F 4 HOH A 10 488 26 HOH HOH . F 4 HOH A 11 489 27 HOH HOH . F 4 HOH A 12 490 28 HOH HOH . F 4 HOH A 13 491 30 HOH HOH . F 4 HOH A 14 492 31 HOH HOH . G 4 HOH B 1 11 11 HOH HOH . G 4 HOH B 2 12 12 HOH HOH . G 4 HOH B 3 13 13 HOH HOH . G 4 HOH B 4 14 14 HOH HOH . G 4 HOH B 5 15 15 HOH HOH . G 4 HOH B 6 16 16 HOH HOH . G 4 HOH B 7 17 17 HOH HOH . G 4 HOH B 8 18 18 HOH HOH . G 4 HOH B 9 19 19 HOH HOH . G 4 HOH B 10 20 20 HOH HOH . G 4 HOH B 11 21 21 HOH HOH . G 4 HOH B 12 22 22 HOH HOH . G 4 HOH B 13 23 23 HOH HOH . G 4 HOH B 14 24 24 HOH HOH . G 4 HOH B 15 25 25 HOH HOH . G 4 HOH B 16 29 29 HOH HOH . G 4 HOH B 17 32 32 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 25.065 _atom_site.Cartn_y -7.311 _atom_site.Cartn_z 63.935 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 111.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 1 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #