data_3DY6 # _model_server_result.job_id -CRGhxwoh4HqyQ9ke2p1xA _model_server_result.datetime_utc '2024-12-26 12:31:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dy6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":478}' # _entry.id 3DY6 # _exptl.entry_id 3DY6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 436.48 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-({[3-(3,4-dihydroisoquinolin-2(1H)-ylsulfonyl)phenyl]carbonyl}amino)benzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.3 _cell.angle_gamma 90 _cell.entry_id 3DY6 _cell.length_a 39.886 _cell.length_b 94.324 _cell.length_c 97.066 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DY6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 1 2 B,E,G 2 1 A,C,D,F 2 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 25.873921 47.162 96.04931 3 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -39.886 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C23 H20 N2 O5 S' _chem_comp.formula_weight 436.48 _chem_comp.id DY6 _chem_comp.mon_nstd_flag . _chem_comp.name '2-({[3-(3,4-dihydroisoquinolin-2(1H)-ylsulfonyl)phenyl]carbonyl}amino)benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 N1 DY6 sing 83 n n N1 S2 DY6 sing 84 n n N1 C4 DY6 sing 85 n n C5 S2 DY6 sing 86 n n O7 S2 DY6 doub 87 n n S2 O6 DY6 doub 88 n n C8 C3 DY6 sing 89 n n C3 H3 DY6 sing 90 n n C3 H3A DY6 sing 91 n n C4 C9 DY6 sing 92 n n C4 H4 DY6 sing 93 n n C4 H4A DY6 sing 94 n n C10 C5 DY6 doub 95 n y C5 C11 DY6 sing 96 n y C13 C8 DY6 doub 97 n y C8 C12 DY6 sing 98 n y C12 C9 DY6 sing 99 n n C9 H9 DY6 sing 100 n n C9 H9A DY6 sing 101 n n C14 C10 DY6 sing 102 n y C10 H10 DY6 sing 103 n n C15 C11 DY6 doub 104 n y C11 H11 DY6 sing 105 n n C16 C12 DY6 doub 106 n y C17 C13 DY6 sing 107 n y C13 H13 DY6 sing 108 n n C18 C14 DY6 sing 109 n n C14 C19 DY6 doub 110 n y C19 C15 DY6 sing 111 n y C15 H15 DY6 sing 112 n n C20 C16 DY6 sing 113 n y C16 H16 DY6 sing 114 n n C17 C20 DY6 doub 115 n y C17 H17 DY6 sing 116 n n N21 C18 DY6 sing 117 n n O22 C18 DY6 doub 118 n n C19 H19 DY6 sing 119 n n C20 H20 DY6 sing 120 n n C23 N21 DY6 sing 121 n n N21 HN21 DY6 sing 122 n n C24 C23 DY6 doub 123 n y C25 C23 DY6 sing 124 n y C26 C24 DY6 sing 125 n y C24 C27 DY6 sing 126 n n C28 C25 DY6 doub 127 n y C25 H25 DY6 sing 128 n n C29 C26 DY6 doub 129 n y C26 H26 DY6 sing 130 n n O31 C27 DY6 doub 131 n n C27 O30 DY6 sing 132 n n C29 C28 DY6 sing 133 n y C28 H28 DY6 sing 134 n n C29 H29 DY6 sing 135 n n O30 HO30 DY6 sing 136 n n # _atom_sites.entry_id 3DY6 _atom_sites.fract_transf_matrix[1][1] 0.025071 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003659 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010602 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IOD A 1 1 1 IOD I1 . D 3 DY6 A 1 478 1 DY6 LIG . E 3 DY6 B 1 1 1 DY6 LIG . F 4 HOH A 1 479 1 HOH HOH . F 4 HOH A 2 480 2 HOH HOH . F 4 HOH A 3 481 3 HOH HOH . F 4 HOH A 4 482 4 HOH HOH . F 4 HOH A 5 483 5 HOH HOH . F 4 HOH A 6 484 6 HOH HOH . F 4 HOH A 7 485 7 HOH HOH . F 4 HOH A 8 486 9 HOH HOH . F 4 HOH A 9 487 10 HOH HOH . F 4 HOH A 10 488 26 HOH HOH . F 4 HOH A 11 489 27 HOH HOH . F 4 HOH A 12 490 28 HOH HOH . F 4 HOH A 13 491 30 HOH HOH . F 4 HOH A 14 492 31 HOH HOH . G 4 HOH B 1 11 11 HOH HOH . G 4 HOH B 2 12 12 HOH HOH . G 4 HOH B 3 13 13 HOH HOH . G 4 HOH B 4 14 14 HOH HOH . G 4 HOH B 5 15 15 HOH HOH . G 4 HOH B 6 16 16 HOH HOH . G 4 HOH B 7 17 17 HOH HOH . G 4 HOH B 8 18 18 HOH HOH . G 4 HOH B 9 19 19 HOH HOH . G 4 HOH B 10 20 20 HOH HOH . G 4 HOH B 11 21 21 HOH HOH . G 4 HOH B 12 22 22 HOH HOH . G 4 HOH B 13 23 23 HOH HOH . G 4 HOH B 14 24 24 HOH HOH . G 4 HOH B 15 25 25 HOH HOH . G 4 HOH B 16 29 29 HOH HOH . G 4 HOH B 17 32 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DY6 . . . D 3 33.158 7.305 61.119 1 50.77 ? N1 DY6 478 A 1 HETATM 2 S S2 DY6 . . . D 3 32.635 5.708 61.462 1 50.99 ? S2 DY6 478 A 1 HETATM 3 C C3 DY6 . . . D 3 34.499 7.347 60.495 1 50.88 ? C3 DY6 478 A 1 HETATM 4 C C4 DY6 . . . D 3 32.826 8.322 62.163 1 50.19 ? C4 DY6 478 A 1 HETATM 5 C C5 DY6 . . . D 3 31.406 5.806 60.176 1 51.19 ? C5 DY6 478 A 1 HETATM 6 O O6 DY6 . . . D 3 31.982 5.59 62.76 1 50.24 ? O6 DY6 478 A 1 HETATM 7 O O7 DY6 . . . D 3 33.62 4.739 61.029 1 51.48 ? O7 DY6 478 A 1 HETATM 8 C C8 DY6 . . . D 3 35.055 8.715 60.394 1 51.15 ? C8 DY6 478 A 1 HETATM 9 C C9 DY6 . . . D 3 33.922 9.293 62.542 1 50.38 ? C9 DY6 478 A 1 HETATM 10 C C10 DY6 . . . D 3 31.706 5.366 58.903 1 51.05 ? C10 DY6 478 A 1 HETATM 11 C C11 DY6 . . . D 3 30.179 6.355 60.483 1 51.51 ? C11 DY6 478 A 1 HETATM 12 C C12 DY6 . . . D 3 34.777 9.643 61.374 1 51.03 ? C12 DY6 478 A 1 HETATM 13 C C13 DY6 . . . D 3 35.848 9.044 59.321 1 51.11 ? C13 DY6 478 A 1 HETATM 14 C C14 DY6 . . . D 3 30.731 5.471 57.93 1 50.65 ? C14 DY6 478 A 1 HETATM 15 C C15 DY6 . . . D 3 29.222 6.456 59.496 1 51.58 ? C15 DY6 478 A 1 HETATM 16 C C16 DY6 . . . D 3 35.3 10.912 61.278 1 51.38 ? C16 DY6 478 A 1 HETATM 17 C C17 DY6 . . . D 3 36.368 10.314 59.234 1 51.5 ? C17 DY6 478 A 1 HETATM 18 C C18 DY6 . . . D 3 30.997 5.003 56.563 1 50.89 ? C18 DY6 478 A 1 HETATM 19 C C19 DY6 . . . D 3 29.499 6.009 58.22 1 51.1 ? C19 DY6 478 A 1 HETATM 20 C C20 DY6 . . . D 3 36.097 11.248 60.21 1 51.36 ? C20 DY6 478 A 1 HETATM 21 N N21 DY6 . . . D 3 30.511 5.834 55.586 1 49.8 ? N21 DY6 478 A 1 HETATM 22 O O22 DY6 . . . D 3 31.598 3.953 56.374 1 52.34 ? O22 DY6 478 A 1 HETATM 23 C C23 DY6 . . . D 3 30.686 5.572 54.209 1 48.92 ? C23 DY6 478 A 1 HETATM 24 C C24 DY6 . . . D 3 30.013 6.341 53.282 1 48.29 ? C24 DY6 478 A 1 HETATM 25 C C25 DY6 . . . D 3 31.521 4.562 53.786 1 47.43 ? C25 DY6 478 A 1 HETATM 26 C C26 DY6 . . . D 3 30.171 6.105 51.939 1 47.53 ? C26 DY6 478 A 1 HETATM 27 C C27 DY6 . . . D 3 29.117 7.422 53.7 1 48.72 ? C27 DY6 478 A 1 HETATM 28 C C28 DY6 . . . D 3 31.676 4.324 52.443 1 47.53 ? C28 DY6 478 A 1 HETATM 29 C C29 DY6 . . . D 3 31.003 5.094 51.524 1 48.01 ? C29 DY6 478 A 1 HETATM 30 O O30 DY6 . . . D 3 28.626 7.348 54.856 1 48.57 ? O30 DY6 478 A 1 HETATM 31 O O31 DY6 . . . D 3 28.916 8.33 52.851 1 51.43 ? O31 DY6 478 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #