data_3DY7
#
_model_server_result.job_id            z7gPKffJK1sIFlQrpLIMBw 
_model_server_result.datetime_utc      '2024-11-07 12:40:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dy7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":9002}' 
#
_entry.id    3DY7 
#
_exptl.entry_id    3DY7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              452.167 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5S)-4,5-difluoro-6-[(2-fluoro-4-iodophenyl)imino]-N-(2-hydroxyethoxy)cyclohexa-1,3-diene-1-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3DY7 
_cell.length_a            81.754 
_cell.length_b            81.754 
_cell.length_c            128.893 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DY7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        171 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 135 A ASN 195 1_555 B MG MG . A MG 9001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc2 A OD1 ASP 148 A ASP 208 1_555 B MG MG . A MG 9001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? 
metalc ? metalc3 C O1B ATP . A ATP 9000 1_555 B MG MG . A MG 9001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc4 C O2A ATP . A ATP 9000 1_555 B MG MG . A MG 9001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
#
_chem_comp.formula           'C15 H12 F3 I N2 O3' 
_chem_comp.formula_weight    452.167 
_chem_comp.id                1CX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5S)-4,5-difluoro-6-[(2-fluoro-4-iodophenyl)imino]-N-(2-hydroxyethoxy)cyclohexa-1,3-diene-1-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C3 1CX sing 1 n n 
N1 C12 1CX doub 2 n n 
C4 C5 1CX doub 3 n y 
C4 C3 1CX sing 4 n y 
C5 C6 1CX sing 5 n y 
C6 C1 1CX doub 6 n y 
C6 I1 1CX sing 7 n n 
C7 C8 1CX doub 8 n n 
C7 C13 1CX sing 9 n n 
C7 C12 1CX sing 10 n n 
C8 C9 1CX sing 11 n n 
C10 C9 1CX doub 12 n n 
C10 C11 1CX sing 13 n n 
C10 F1 1CX sing 14 n n 
C13 O1 1CX doub 15 n n 
C13 N2 1CX sing 16 n n 
C15 C14 1CX sing 17 n n 
C15 O3 1CX sing 18 n n 
C1 C2 1CX sing 19 n y 
C2 C3 1CX doub 20 n y 
C2 F3 1CX sing 21 n n 
C11 C12 1CX sing 22 n n 
C11 F2 1CX sing 23 n n 
N2 O2 1CX sing 24 n n 
O2 C14 1CX sing 25 n n 
C4 H4 1CX sing 26 n n 
C5 H5 1CX sing 27 n n 
C8 H8 1CX sing 28 n n 
C15 H15 1CX sing 29 n n 
C15 H15A 1CX sing 30 n n 
C1 H1 1CX sing 31 n n 
C9 H9 1CX sing 32 n n 
C11 H11 1CX sing 33 n n 
N2 HN2 1CX sing 34 n n 
C14 H14 1CX sing 35 n n 
C14 H14A 1CX sing 36 n n 
O3 HO3 1CX sing 37 n n 
#
_atom_sites.entry_id                     3DY7 
_atom_sites.fract_transf_matrix[1][1]    0.012232 
_atom_sites.fract_transf_matrix[1][2]    0.007062 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014124 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007758 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 9001 9001 MG MG . 
C 3 ATP A 1 9000 9000 ATP ATP . 
D 4 1CX A 1 9002 9002 1CX 1CX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 1CX . . . D 4 39.825 -14.306 6.721 1 59.2 ? N1 1CX 9002 A 1 
HETATM 2 C C4 1CX . . . D 4 40.159 -16.676 6.32 1 64.67 ? C4 1CX 9002 A 1 
HETATM 3 C C5 1CX . . . D 4 40.847 -17.824 6.684 1 65.73 ? C5 1CX 9002 A 1 
HETATM 4 C C6 1CX . . . D 4 41.775 -17.833 7.713 1 66.94 ? C6 1CX 9002 A 1 
HETATM 5 C C7 1CX . . . D 4 39.223 -12.973 4.832 1 60.74 ? C7 1CX 9002 A 1 
HETATM 6 C C8 1CX . . . D 4 38.334 -12.773 3.806 1 58.11 ? C8 1CX 9002 A 1 
HETATM 7 C C10 1CX . . . D 4 37.102 -14.672 4.518 1 58.67 ? C10 1CX 9002 A 1 
HETATM 8 C C13 1CX . . . D 4 40.34 -12.017 4.99 1 62.38 ? C13 1CX 9002 A 1 
HETATM 9 C C15 1CX . . . D 4 42.213 -8.119 5.233 1 75.69 ? C15 1CX 9002 A 1 
HETATM 10 C C1 1CX . . . D 4 42.009 -16.644 8.343 1 66.1 ? C1 1CX 9002 A 1 
HETATM 11 C C2 1CX . . . D 4 41.326 -15.521 7.978 1 66.5 ? C2 1CX 9002 A 1 
HETATM 12 C C3 1CX . . . D 4 40.404 -15.498 6.983 1 64.45 ? C3 1CX 9002 A 1 
HETATM 13 I I1 1CX . . . D 4 42.843 -19.469 8.321 1 65.74 ? I1 1CX 9002 A 1 
HETATM 14 C C9 1CX . . . D 4 37.271 -13.631 3.647 1 58.49 ? C9 1CX 9002 A 1 
HETATM 15 C C11 1CX . . . D 4 37.999 -14.837 5.524 1 58.33 ? C11 1CX 9002 A 1 
HETATM 16 C C12 1CX . . . D 4 39.042 -14.026 5.686 1 59.43 ? C12 1CX 9002 A 1 
HETATM 17 F F1 1CX . . . D 4 36.077 -15.496 4.379 1 58.63 ? F1 1CX 9002 A 1 
HETATM 18 F F2 1CX . . . D 4 37.918 -15.8 6.396 1 58.54 ? F2 1CX 9002 A 1 
HETATM 19 F F3 1CX . . . D 4 41.573 -14.412 8.625 1 63.08 ? F3 1CX 9002 A 1 
HETATM 20 O O1 1CX . . . D 4 41.006 -12.011 5.972 1 61.67 ? O1 1CX 9002 A 1 
HETATM 21 N N2 1CX . . . D 4 40.596 -11.119 4.096 1 66.76 ? N2 1CX 9002 A 1 
HETATM 22 O O2 1CX . . . D 4 41.621 -10.302 4.388 1 72.67 ? O2 1CX 9002 A 1 
HETATM 23 C C14 1CX . . . D 4 41.513 -8.908 4.145 1 72.97 ? C14 1CX 9002 A 1 
HETATM 24 O O3 1CX . . . D 4 41.397 -8.125 6.392 1 70.7 ? O3 1CX 9002 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           24 
#