data_3DYT # _model_server_result.job_id hu6wFN2qOwtAFxVjyJVTHA _model_server_result.datetime_utc '2024-11-23 00:40:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dyt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 3DYT # _exptl.entry_id 3DYT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DYT _cell.length_a 67 _cell.length_b 144.005 _cell.length_c 103.331 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DYT _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 144.005 103.331 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 12 A PRO 241 1_555 A N MSE 13 A MSE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 13 A MSE 242 1_555 A N TRP 14 A TRP 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale3 A C LYS 33 A LYS 262 1_555 A N MSE 34 A MSE 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 34 A MSE 263 1_555 A N TYR 35 A TYR 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C LYS 96 A LYS 325 1_555 A N MSE 97 A MSE 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale6 A C MSE 97 A MSE 326 1_555 A N ARG 98 A ARG 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 A C ARG 98 A ARG 327 1_555 A N MSE 99 A MSE 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 A C MSE 99 A MSE 328 1_555 A N GLU 100 A GLU 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale9 A C TRP 105 A TRP 334 1_555 A N MSE 106 A MSE 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 A C MSE 106 A MSE 335 1_555 A N THR 107 A THR 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 A C ARG 108 A ARG 337 1_555 A N MSE 109 A MSE 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale12 A C MSE 109 A MSE 338 1_555 A N CYS 110 A CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale13 A C VAL 148 A VAL 377 1_555 A N MSE 149 A MSE 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 A C MSE 149 A MSE 378 1_555 A N ILE 150 A ILE 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale15 A C THR 153 A THR 382 1_555 A N MSE 154 A MSE 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 A C MSE 154 A MSE 383 1_555 A N GLU 155 A GLU 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 A C ALA 179 A ALA 408 1_555 A N MSE 180 A MSE 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale18 A C MSE 180 A MSE 409 1_555 A N ASP 181 A ASP 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale19 A C LEU 260 A LEU 489 1_555 A N MSE 261 A MSE 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale20 A C MSE 261 A MSE 490 1_555 A N GLU 262 A GLU 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale21 A C ASN 307 A ASN 536 1_555 A N MSE 308 A MSE 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale22 A C MSE 308 A MSE 537 1_555 A N VAL 309 A VAL 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale23 A C ILE 314 A ILE 543 1_555 A N MSE 315 A MSE 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale24 A C MSE 315 A MSE 544 1_555 A N SER 316 A SER 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale25 A C GLU 322 A GLU 551 1_555 A N MSE 323 A MSE 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale26 A C MSE 323 A MSE 552 1_555 A N ASN 324 A ASN 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale27 A C VAL 365 A VAL 594 1_555 A N MSE 366 A MSE 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 3DYT _atom_sites.fract_transf_matrix[1][1] 0.014925 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006944 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009678 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 701 1 SO4 SO4 . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 12 12 HOH HOH . C 3 HOH A 11 13 13 HOH HOH . C 3 HOH A 12 14 14 HOH HOH . C 3 HOH A 13 15 15 HOH HOH . C 3 HOH A 14 16 16 HOH HOH . C 3 HOH A 15 17 17 HOH HOH . C 3 HOH A 16 18 18 HOH HOH . C 3 HOH A 17 19 19 HOH HOH . C 3 HOH A 18 20 20 HOH HOH . C 3 HOH A 19 21 21 HOH HOH . C 3 HOH A 20 22 22 HOH HOH . C 3 HOH A 21 23 23 HOH HOH . C 3 HOH A 22 24 24 HOH HOH . C 3 HOH A 23 25 25 HOH HOH . C 3 HOH A 24 26 26 HOH HOH . C 3 HOH A 25 27 27 HOH HOH . C 3 HOH A 26 28 28 HOH HOH . C 3 HOH A 27 29 29 HOH HOH . C 3 HOH A 28 30 30 HOH HOH . C 3 HOH A 29 31 31 HOH HOH . C 3 HOH A 30 32 32 HOH HOH . C 3 HOH A 31 33 33 HOH HOH . C 3 HOH A 32 34 34 HOH HOH . C 3 HOH A 33 36 36 HOH HOH . C 3 HOH A 34 37 37 HOH HOH . C 3 HOH A 35 38 38 HOH HOH . C 3 HOH A 36 39 39 HOH HOH . C 3 HOH A 37 40 40 HOH HOH . C 3 HOH A 38 41 41 HOH HOH . C 3 HOH A 39 42 42 HOH HOH . C 3 HOH A 40 43 43 HOH HOH . C 3 HOH A 41 44 44 HOH HOH . C 3 HOH A 42 45 45 HOH HOH . C 3 HOH A 43 46 46 HOH HOH . C 3 HOH A 44 47 47 HOH HOH . C 3 HOH A 45 48 48 HOH HOH . C 3 HOH A 46 50 50 HOH HOH . C 3 HOH A 47 52 52 HOH HOH . C 3 HOH A 48 55 55 HOH HOH . C 3 HOH A 49 56 56 HOH HOH . C 3 HOH A 50 57 57 HOH HOH . C 3 HOH A 51 58 58 HOH HOH . C 3 HOH A 52 59 59 HOH HOH . C 3 HOH A 53 60 60 HOH HOH . C 3 HOH A 54 62 62 HOH HOH . C 3 HOH A 55 63 63 HOH HOH . C 3 HOH A 56 64 64 HOH HOH . C 3 HOH A 57 65 65 HOH HOH . C 3 HOH A 58 66 66 HOH HOH . C 3 HOH A 59 68 68 HOH HOH . C 3 HOH A 60 69 69 HOH HOH . C 3 HOH A 61 70 70 HOH HOH . C 3 HOH A 62 71 71 HOH HOH . C 3 HOH A 63 72 72 HOH HOH . C 3 HOH A 64 73 73 HOH HOH . C 3 HOH A 65 74 74 HOH HOH . C 3 HOH A 66 75 75 HOH HOH . C 3 HOH A 67 76 76 HOH HOH . C 3 HOH A 68 77 77 HOH HOH . C 3 HOH A 69 78 78 HOH HOH . C 3 HOH A 70 79 79 HOH HOH . C 3 HOH A 71 80 80 HOH HOH . C 3 HOH A 72 81 81 HOH HOH . C 3 HOH A 73 82 82 HOH HOH . C 3 HOH A 74 83 83 HOH HOH . C 3 HOH A 75 84 84 HOH HOH . C 3 HOH A 76 85 85 HOH HOH . C 3 HOH A 77 86 86 HOH HOH . C 3 HOH A 78 87 87 HOH HOH . C 3 HOH A 79 88 88 HOH HOH . C 3 HOH A 80 89 89 HOH HOH . C 3 HOH A 81 90 90 HOH HOH . C 3 HOH A 82 91 91 HOH HOH . C 3 HOH A 83 92 92 HOH HOH . C 3 HOH A 84 93 93 HOH HOH . C 3 HOH A 85 94 94 HOH HOH . C 3 HOH A 86 95 95 HOH HOH . C 3 HOH A 87 96 96 HOH HOH . C 3 HOH A 88 97 97 HOH HOH . C 3 HOH A 89 98 98 HOH HOH . C 3 HOH A 90 99 99 HOH HOH . C 3 HOH A 91 100 100 HOH HOH . C 3 HOH A 92 101 101 HOH HOH . C 3 HOH A 93 102 102 HOH HOH . C 3 HOH A 94 103 103 HOH HOH . C 3 HOH A 95 104 104 HOH HOH . C 3 HOH A 96 105 105 HOH HOH . C 3 HOH A 97 106 106 HOH HOH . C 3 HOH A 98 107 107 HOH HOH . C 3 HOH A 99 108 108 HOH HOH . C 3 HOH A 100 109 109 HOH HOH . C 3 HOH A 101 110 110 HOH HOH . C 3 HOH A 102 111 111 HOH HOH . C 3 HOH A 103 112 112 HOH HOH . C 3 HOH A 104 113 113 HOH HOH . C 3 HOH A 105 114 114 HOH HOH . C 3 HOH A 106 115 115 HOH HOH . C 3 HOH A 107 116 116 HOH HOH . C 3 HOH A 108 117 117 HOH HOH . C 3 HOH A 109 118 118 HOH HOH . C 3 HOH A 110 119 119 HOH HOH . C 3 HOH A 111 120 120 HOH HOH . C 3 HOH A 112 121 121 HOH HOH . C 3 HOH A 113 122 122 HOH HOH . C 3 HOH A 114 123 123 HOH HOH . C 3 HOH A 115 124 124 HOH HOH . C 3 HOH A 116 125 125 HOH HOH . C 3 HOH A 117 126 126 HOH HOH . C 3 HOH A 118 127 127 HOH HOH . C 3 HOH A 119 128 128 HOH HOH . C 3 HOH A 120 129 129 HOH HOH . C 3 HOH A 121 130 130 HOH HOH . C 3 HOH A 122 131 131 HOH HOH . C 3 HOH A 123 132 132 HOH HOH . C 3 HOH A 124 133 133 HOH HOH . C 3 HOH A 125 134 134 HOH HOH . C 3 HOH A 126 135 135 HOH HOH . C 3 HOH A 127 136 136 HOH HOH . C 3 HOH A 128 138 138 HOH HOH . C 3 HOH A 129 139 139 HOH HOH . C 3 HOH A 130 140 140 HOH HOH . C 3 HOH A 131 141 141 HOH HOH . C 3 HOH A 132 142 142 HOH HOH . C 3 HOH A 133 143 143 HOH HOH . C 3 HOH A 134 144 144 HOH HOH . C 3 HOH A 135 145 145 HOH HOH . C 3 HOH A 136 146 146 HOH HOH . C 3 HOH A 137 147 147 HOH HOH . C 3 HOH A 138 148 148 HOH HOH . C 3 HOH A 139 149 149 HOH HOH . C 3 HOH A 140 150 150 HOH HOH . C 3 HOH A 141 151 151 HOH HOH . C 3 HOH A 142 152 152 HOH HOH . C 3 HOH A 143 153 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . B 2 1.037 29.186 30.392 1 60.33 ? S SO4 701 A 1 HETATM 2 O O1 SO4 . . . B 2 1.82 28.028 30.848 1 54.42 ? O1 SO4 701 A 1 HETATM 3 O O2 SO4 . . . B 2 0.424 29.88 31.53 1 58.03 ? O2 SO4 701 A 1 HETATM 4 O O3 SO4 . . . B 2 1.888 30.131 29.66 1 55.99 ? O3 SO4 701 A 1 HETATM 5 O O4 SO4 . . . B 2 -0.024 28.714 29.496 1 64.19 ? O4 SO4 701 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 5 #