data_3DZ2
#
_model_server_result.job_id            YMRGDBHsYto1QHPh8r1XvQ 
_model_server_result.datetime_utc      '2024-10-18 16:31:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dz2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":350}' 
#
_entry.id    3DZ2 
#
_exptl.entry_id    3DZ2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.151 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,4-DIAMINOBUTANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.56 
_cell.angle_gamma         90 
_cell.entry_id            3DZ2 
_cell.length_a            100.088 
_cell.length_b            50.745 
_cell.length_c            69.039 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DZ2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            C 
_struct_conn.ptnr1_label_comp_id            PYR 
_struct_conn.ptnr1_label_seq_id             1 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             PYR 
_struct_conn.ptnr1_auth_seq_id              68 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            N 
_struct_conn.ptnr2_label_comp_id            SER 
_struct_conn.ptnr2_label_seq_id             2 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             SER 
_struct_conn.ptnr2_auth_seq_id              69 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.408 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C4 H12 N2' 
_chem_comp.formula_weight    88.151 
_chem_comp.id                PUT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,4-DIAMINOBUTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PUTRESCINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N2 C4 PUT sing 329 n n 
N2 HN21 PUT sing 330 n n 
N2 HN22 PUT sing 331 n n 
C4 C3 PUT sing 332 n n 
C4 H41 PUT sing 333 n n 
C4 H42 PUT sing 334 n n 
C3 C2 PUT sing 335 n n 
C3 H31 PUT sing 336 n n 
C3 H32 PUT sing 337 n n 
C2 C1 PUT sing 338 n n 
C2 H21 PUT sing 339 n n 
C2 H22 PUT sing 340 n n 
C1 N1 PUT sing 341 n n 
C1 H11 PUT sing 342 n n 
C1 H12 PUT sing 343 n n 
N1 HN11 PUT sing 344 n n 
N1 HN12 PUT sing 345 n n 
#
_atom_sites.entry_id                     3DZ2 
_atom_sites.fract_transf_matrix[1][1]    0.009991 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002783 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019706 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015036 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PUT B 1 350 350 PUT PUT . 
D 4 A8M A 1 368 368 A8M A8M . 
E 5 HOH B 1 351 1 HOH HOH . 
E 5 HOH B 2 352 2 HOH HOH . 
E 5 HOH B 3 353 5 HOH HOH . 
E 5 HOH B 4 354 10 HOH HOH . 
E 5 HOH B 5 355 18 HOH HOH . 
E 5 HOH B 6 356 20 HOH HOH . 
E 5 HOH B 7 357 25 HOH HOH . 
E 5 HOH B 8 359 34 HOH HOH . 
E 5 HOH B 9 360 35 HOH HOH . 
E 5 HOH B 10 361 41 HOH HOH . 
E 5 HOH B 11 362 43 HOH HOH . 
E 5 HOH B 12 363 45 HOH HOH . 
E 5 HOH B 13 364 48 HOH HOH . 
E 5 HOH B 14 365 51 HOH HOH . 
E 5 HOH B 15 366 52 HOH HOH . 
E 5 HOH B 16 367 60 HOH HOH . 
E 5 HOH B 17 368 67 HOH HOH . 
E 5 HOH B 18 369 69 HOH HOH . 
E 5 HOH B 19 370 76 HOH HOH . 
E 5 HOH B 20 371 77 HOH HOH . 
E 5 HOH B 21 372 80 HOH HOH . 
E 5 HOH B 22 373 86 HOH HOH . 
E 5 HOH B 23 374 87 HOH HOH . 
E 5 HOH B 24 375 89 HOH HOH . 
E 5 HOH B 25 376 101 HOH HOH . 
E 5 HOH B 26 378 108 HOH HOH . 
E 5 HOH B 27 379 110 HOH HOH . 
E 5 HOH B 28 380 112 HOH HOH . 
E 5 HOH B 29 381 113 HOH HOH . 
E 5 HOH B 30 382 119 HOH HOH . 
E 5 HOH B 31 383 121 HOH HOH . 
E 5 HOH B 32 384 127 HOH HOH . 
E 5 HOH B 33 385 133 HOH HOH . 
E 5 HOH B 34 386 136 HOH HOH . 
E 5 HOH B 35 387 139 HOH HOH . 
E 5 HOH B 36 388 147 HOH HOH . 
E 5 HOH B 37 389 153 HOH HOH . 
E 5 HOH B 38 390 158 HOH HOH . 
E 5 HOH B 39 391 159 HOH HOH . 
E 5 HOH B 40 392 165 HOH HOH . 
E 5 HOH B 41 393 175 HOH HOH . 
E 5 HOH B 42 394 191 HOH HOH . 
E 5 HOH B 43 395 196 HOH HOH . 
E 5 HOH B 44 396 198 HOH HOH . 
E 5 HOH B 45 397 199 HOH HOH . 
E 5 HOH B 46 398 207 HOH HOH . 
E 5 HOH B 47 399 208 HOH HOH . 
E 5 HOH B 48 400 209 HOH HOH . 
E 5 HOH B 49 401 210 HOH HOH . 
F 5 HOH A 1 369 26 HOH HOH . 
F 5 HOH A 2 370 107 HOH HOH . 
F 5 HOH A 3 371 3 HOH HOH . 
F 5 HOH A 4 372 4 HOH HOH . 
F 5 HOH A 5 373 6 HOH HOH . 
F 5 HOH A 6 374 7 HOH HOH . 
F 5 HOH A 7 375 8 HOH HOH . 
F 5 HOH A 8 376 9 HOH HOH . 
F 5 HOH A 9 377 11 HOH HOH . 
F 5 HOH A 10 378 12 HOH HOH . 
F 5 HOH A 11 379 13 HOH HOH . 
F 5 HOH A 12 380 14 HOH HOH . 
F 5 HOH A 13 381 15 HOH HOH . 
F 5 HOH A 14 382 16 HOH HOH . 
F 5 HOH A 15 383 17 HOH HOH . 
F 5 HOH A 16 384 19 HOH HOH . 
F 5 HOH A 17 385 21 HOH HOH . 
F 5 HOH A 18 386 22 HOH HOH . 
F 5 HOH A 19 387 23 HOH HOH . 
F 5 HOH A 20 388 24 HOH HOH . 
F 5 HOH A 21 389 27 HOH HOH . 
F 5 HOH A 22 390 38 HOH HOH . 
F 5 HOH A 23 391 29 HOH HOH . 
F 5 HOH A 24 392 30 HOH HOH . 
F 5 HOH A 25 393 31 HOH HOH . 
F 5 HOH A 26 394 32 HOH HOH . 
F 5 HOH A 27 395 33 HOH HOH . 
F 5 HOH A 28 396 36 HOH HOH . 
F 5 HOH A 29 397 37 HOH HOH . 
F 5 HOH A 30 398 39 HOH HOH . 
F 5 HOH A 31 399 40 HOH HOH . 
F 5 HOH A 32 400 42 HOH HOH . 
F 5 HOH A 33 401 44 HOH HOH . 
F 5 HOH A 34 402 46 HOH HOH . 
F 5 HOH A 35 403 47 HOH HOH . 
F 5 HOH A 36 404 49 HOH HOH . 
F 5 HOH A 37 405 50 HOH HOH . 
F 5 HOH A 38 406 53 HOH HOH . 
F 5 HOH A 39 407 54 HOH HOH . 
F 5 HOH A 40 408 55 HOH HOH . 
F 5 HOH A 41 409 56 HOH HOH . 
F 5 HOH A 42 410 57 HOH HOH . 
F 5 HOH A 43 411 58 HOH HOH . 
F 5 HOH A 44 412 59 HOH HOH . 
F 5 HOH A 45 413 61 HOH HOH . 
F 5 HOH A 46 414 62 HOH HOH . 
F 5 HOH A 47 415 63 HOH HOH . 
F 5 HOH A 48 416 64 HOH HOH . 
F 5 HOH A 49 417 65 HOH HOH . 
F 5 HOH A 50 418 66 HOH HOH . 
F 5 HOH A 51 419 68 HOH HOH . 
F 5 HOH A 52 420 70 HOH HOH . 
F 5 HOH A 53 421 71 HOH HOH . 
F 5 HOH A 54 422 72 HOH HOH . 
F 5 HOH A 55 423 73 HOH HOH . 
F 5 HOH A 56 424 74 HOH HOH . 
F 5 HOH A 57 425 75 HOH HOH . 
F 5 HOH A 58 426 78 HOH HOH . 
F 5 HOH A 59 427 79 HOH HOH . 
F 5 HOH A 60 428 81 HOH HOH . 
F 5 HOH A 61 429 82 HOH HOH . 
F 5 HOH A 62 430 83 HOH HOH . 
F 5 HOH A 63 431 84 HOH HOH . 
F 5 HOH A 64 432 85 HOH HOH . 
F 5 HOH A 65 433 88 HOH HOH . 
F 5 HOH A 66 434 90 HOH HOH . 
F 5 HOH A 67 435 91 HOH HOH . 
F 5 HOH A 68 436 92 HOH HOH . 
F 5 HOH A 69 437 93 HOH HOH . 
F 5 HOH A 70 438 94 HOH HOH . 
F 5 HOH A 71 439 95 HOH HOH . 
F 5 HOH A 72 440 96 HOH HOH . 
F 5 HOH A 73 441 97 HOH HOH . 
F 5 HOH A 74 442 98 HOH HOH . 
F 5 HOH A 75 443 99 HOH HOH . 
F 5 HOH A 76 444 100 HOH HOH . 
F 5 HOH A 77 445 102 HOH HOH . 
F 5 HOH A 78 446 103 HOH HOH . 
F 5 HOH A 79 447 104 HOH HOH . 
F 5 HOH A 80 448 105 HOH HOH . 
F 5 HOH A 81 449 106 HOH HOH . 
F 5 HOH A 82 450 109 HOH HOH . 
F 5 HOH A 83 451 111 HOH HOH . 
F 5 HOH A 84 452 114 HOH HOH . 
F 5 HOH A 85 453 115 HOH HOH . 
F 5 HOH A 86 454 116 HOH HOH . 
F 5 HOH A 87 455 117 HOH HOH . 
F 5 HOH A 88 456 118 HOH HOH . 
F 5 HOH A 89 457 120 HOH HOH . 
F 5 HOH A 90 458 122 HOH HOH . 
F 5 HOH A 91 459 123 HOH HOH . 
F 5 HOH A 92 460 124 HOH HOH . 
F 5 HOH A 93 461 125 HOH HOH . 
F 5 HOH A 94 462 126 HOH HOH . 
F 5 HOH A 95 463 128 HOH HOH . 
F 5 HOH A 96 464 129 HOH HOH . 
F 5 HOH A 97 465 130 HOH HOH . 
F 5 HOH A 98 466 131 HOH HOH . 
F 5 HOH A 99 467 132 HOH HOH . 
F 5 HOH A 100 468 134 HOH HOH . 
F 5 HOH A 101 469 135 HOH HOH . 
F 5 HOH A 102 470 137 HOH HOH . 
F 5 HOH A 103 471 138 HOH HOH . 
F 5 HOH A 104 472 140 HOH HOH . 
F 5 HOH A 105 473 141 HOH HOH . 
F 5 HOH A 106 474 142 HOH HOH . 
F 5 HOH A 107 475 143 HOH HOH . 
F 5 HOH A 108 476 144 HOH HOH . 
F 5 HOH A 109 477 145 HOH HOH . 
F 5 HOH A 110 478 146 HOH HOH . 
F 5 HOH A 111 479 148 HOH HOH . 
F 5 HOH A 112 480 149 HOH HOH . 
F 5 HOH A 113 481 150 HOH HOH . 
F 5 HOH A 114 482 151 HOH HOH . 
F 5 HOH A 115 483 152 HOH HOH . 
F 5 HOH A 116 484 154 HOH HOH . 
F 5 HOH A 117 485 155 HOH HOH . 
F 5 HOH A 118 486 156 HOH HOH . 
F 5 HOH A 119 487 157 HOH HOH . 
F 5 HOH A 120 488 160 HOH HOH . 
F 5 HOH A 121 489 161 HOH HOH . 
F 5 HOH A 122 490 162 HOH HOH . 
F 5 HOH A 123 491 163 HOH HOH . 
F 5 HOH A 124 492 164 HOH HOH . 
F 5 HOH A 125 493 166 HOH HOH . 
F 5 HOH A 126 494 167 HOH HOH . 
F 5 HOH A 127 495 168 HOH HOH . 
F 5 HOH A 128 496 169 HOH HOH . 
F 5 HOH A 129 497 170 HOH HOH . 
F 5 HOH A 130 498 171 HOH HOH . 
F 5 HOH A 131 499 172 HOH HOH . 
F 5 HOH A 132 500 173 HOH HOH . 
F 5 HOH A 133 501 174 HOH HOH . 
F 5 HOH A 134 502 176 HOH HOH . 
F 5 HOH A 135 503 177 HOH HOH . 
F 5 HOH A 136 504 178 HOH HOH . 
F 5 HOH A 137 505 179 HOH HOH . 
F 5 HOH A 138 506 180 HOH HOH . 
F 5 HOH A 139 507 181 HOH HOH . 
F 5 HOH A 140 508 182 HOH HOH . 
F 5 HOH A 141 509 183 HOH HOH . 
F 5 HOH A 142 510 184 HOH HOH . 
F 5 HOH A 143 511 185 HOH HOH . 
F 5 HOH A 144 512 186 HOH HOH . 
F 5 HOH A 145 513 187 HOH HOH . 
F 5 HOH A 146 514 188 HOH HOH . 
F 5 HOH A 147 515 189 HOH HOH . 
F 5 HOH A 148 516 190 HOH HOH . 
F 5 HOH A 149 517 192 HOH HOH . 
F 5 HOH A 150 518 193 HOH HOH . 
F 5 HOH A 151 519 194 HOH HOH . 
F 5 HOH A 152 520 195 HOH HOH . 
F 5 HOH A 153 521 197 HOH HOH . 
F 5 HOH A 154 522 200 HOH HOH . 
F 5 HOH A 155 523 201 HOH HOH . 
F 5 HOH A 156 524 202 HOH HOH . 
F 5 HOH A 157 525 203 HOH HOH . 
F 5 HOH A 158 526 204 HOH HOH . 
F 5 HOH A 159 527 205 HOH HOH . 
F 5 HOH A 160 528 206 HOH HOH . 
F 5 HOH A 161 529 211 HOH HOH . 
F 5 HOH A 162 530 212 HOH HOH . 
F 5 HOH A 163 531 213 HOH HOH . 
F 5 HOH A 164 532 214 HOH HOH . 
F 5 HOH A 165 533 215 HOH HOH . 
F 5 HOH A 166 534 216 HOH HOH . 
F 5 HOH A 167 535 217 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N2 PUT . . . C 3 -71.587 -13.423 22.562 1 25.9 ? N2 PUT 350 B 1 
HETATM 2 C C4 PUT . . . C 3 -72.193 -14.095 23.606 1 28.85 ? C4 PUT 350 B 1 
HETATM 3 C C3 PUT . . . C 3 -72.319 -15.552 23.519 1 29.27 ? C3 PUT 350 B 1 
HETATM 4 C C2 PUT . . . C 3 -73.087 -16.073 24.657 1 32.42 ? C2 PUT 350 B 1 
HETATM 5 C C1 PUT . . . C 3 -73.591 -17.452 24.687 1 29.02 ? C1 PUT 350 B 1 
HETATM 6 N N1 PUT . . . C 3 -74.449 -17.815 23.556 1 33.23 ? N1 PUT 350 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#