data_3DZ3
#
_model_server_result.job_id            me6j9t0kmmYIYSZlotF1Tg 
_model_server_result.datetime_utc      '2024-11-16 21:48:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dz3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":350}' 
#
_entry.id    3DZ3 
#
_exptl.entry_id    3DZ3 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              88.151 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,4-DIAMINOBUTANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.52 
_cell.angle_gamma         90 
_cell.entry_id            3DZ3 
_cell.length_a            95.976 
_cell.length_b            44.245 
_cell.length_c            70.832 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DZ3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C PYR 1 A PYR 68 1_555 B N SER 2 A SER 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? 
covale ? covale2 B CA PYR 1 A PYR 68 1_555 D N SMM . A SMM 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? 
#
_chem_comp.formula           'C4 H12 N2' 
_chem_comp.formula_weight    88.151 
_chem_comp.id                PUT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,4-DIAMINOBUTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PUTRESCINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N2 C4 PUT sing 277 n n 
N2 HN21 PUT sing 278 n n 
N2 HN22 PUT sing 279 n n 
C4 C3 PUT sing 280 n n 
C4 H41 PUT sing 281 n n 
C4 H42 PUT sing 282 n n 
C3 C2 PUT sing 283 n n 
C3 H31 PUT sing 284 n n 
C3 H32 PUT sing 285 n n 
C2 C1 PUT sing 286 n n 
C2 H21 PUT sing 287 n n 
C2 H22 PUT sing 288 n n 
C1 N1 PUT sing 289 n n 
C1 H11 PUT sing 290 n n 
C1 H12 PUT sing 291 n n 
N1 HN11 PUT sing 292 n n 
N1 HN12 PUT sing 293 n n 
#
_atom_sites.entry_id                     3DZ3 
_atom_sites.fract_transf_matrix[1][1]    0.010419 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002698 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022601 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014584 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PUT B 1 350 350 PUT PUT . 
D 4 SMM A 1 368 368 SMM SMM . 
E 5 HOH B 1 351 2 HOH HOH . 
E 5 HOH B 2 352 4 HOH HOH . 
E 5 HOH B 3 353 12 HOH HOH . 
E 5 HOH B 4 354 20 HOH HOH . 
E 5 HOH B 5 355 21 HOH HOH . 
E 5 HOH B 6 356 26 HOH HOH . 
E 5 HOH B 7 357 28 HOH HOH . 
E 5 HOH B 8 359 33 HOH HOH . 
E 5 HOH B 9 360 37 HOH HOH . 
E 5 HOH B 10 361 39 HOH HOH . 
E 5 HOH B 11 362 44 HOH HOH . 
E 5 HOH B 12 363 45 HOH HOH . 
E 5 HOH B 13 364 46 HOH HOH . 
E 5 HOH B 14 365 48 HOH HOH . 
E 5 HOH B 15 366 52 HOH HOH . 
E 5 HOH B 16 367 54 HOH HOH . 
E 5 HOH B 17 368 55 HOH HOH . 
E 5 HOH B 18 369 56 HOH HOH . 
E 5 HOH B 19 370 60 HOH HOH . 
E 5 HOH B 20 371 63 HOH HOH . 
E 5 HOH B 21 372 70 HOH HOH . 
E 5 HOH B 22 373 79 HOH HOH . 
F 5 HOH A 1 358 30 HOH HOH . 
F 5 HOH A 2 369 1 HOH HOH . 
F 5 HOH A 3 370 3 HOH HOH . 
F 5 HOH A 4 371 5 HOH HOH . 
F 5 HOH A 5 372 6 HOH HOH . 
F 5 HOH A 6 373 7 HOH HOH . 
F 5 HOH A 7 374 8 HOH HOH . 
F 5 HOH A 8 375 9 HOH HOH . 
F 5 HOH A 9 376 10 HOH HOH . 
F 5 HOH A 10 377 11 HOH HOH . 
F 5 HOH A 11 378 13 HOH HOH . 
F 5 HOH A 12 379 14 HOH HOH . 
F 5 HOH A 13 380 15 HOH HOH . 
F 5 HOH A 14 381 16 HOH HOH . 
F 5 HOH A 15 382 17 HOH HOH . 
F 5 HOH A 16 383 18 HOH HOH . 
F 5 HOH A 17 384 19 HOH HOH . 
F 5 HOH A 18 385 22 HOH HOH . 
F 5 HOH A 19 386 23 HOH HOH . 
F 5 HOH A 20 387 24 HOH HOH . 
F 5 HOH A 21 388 25 HOH HOH . 
F 5 HOH A 22 389 27 HOH HOH . 
F 5 HOH A 23 390 29 HOH HOH . 
F 5 HOH A 24 391 31 HOH HOH . 
F 5 HOH A 25 392 32 HOH HOH . 
F 5 HOH A 26 393 34 HOH HOH . 
F 5 HOH A 27 394 35 HOH HOH . 
F 5 HOH A 28 395 36 HOH HOH . 
F 5 HOH A 29 396 38 HOH HOH . 
F 5 HOH A 30 397 40 HOH HOH . 
F 5 HOH A 31 398 41 HOH HOH . 
F 5 HOH A 32 399 42 HOH HOH . 
F 5 HOH A 33 400 43 HOH HOH . 
F 5 HOH A 34 401 47 HOH HOH . 
F 5 HOH A 35 402 49 HOH HOH . 
F 5 HOH A 36 403 50 HOH HOH . 
F 5 HOH A 37 404 51 HOH HOH . 
F 5 HOH A 38 405 53 HOH HOH . 
F 5 HOH A 39 406 57 HOH HOH . 
F 5 HOH A 40 407 58 HOH HOH . 
F 5 HOH A 41 408 59 HOH HOH . 
F 5 HOH A 42 409 61 HOH HOH . 
F 5 HOH A 43 410 62 HOH HOH . 
F 5 HOH A 44 411 64 HOH HOH . 
F 5 HOH A 45 412 65 HOH HOH . 
F 5 HOH A 46 413 66 HOH HOH . 
F 5 HOH A 47 414 67 HOH HOH . 
F 5 HOH A 48 415 68 HOH HOH . 
F 5 HOH A 49 416 69 HOH HOH . 
F 5 HOH A 50 417 71 HOH HOH . 
F 5 HOH A 51 418 72 HOH HOH . 
F 5 HOH A 52 419 73 HOH HOH . 
F 5 HOH A 53 420 74 HOH HOH . 
F 5 HOH A 54 421 75 HOH HOH . 
F 5 HOH A 55 422 76 HOH HOH . 
F 5 HOH A 56 423 77 HOH HOH . 
F 5 HOH A 57 424 78 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N2 PUT . . . C 3 27.328 -18.816 23.291 1 34.82 ? N2 PUT 350 B 1 
HETATM 2 C C4 PUT . . . C 3 26.722 -19.362 24.513 1 32.81 ? C4 PUT 350 B 1 
HETATM 3 C C3 PUT . . . C 3 26.348 -20.851 24.293 1 31.72 ? C3 PUT 350 B 1 
HETATM 4 C C2 PUT . . . C 3 25.684 -21.44 25.572 1 31.79 ? C2 PUT 350 B 1 
HETATM 5 C C1 PUT . . . C 3 25.279 -22.927 25.399 1 30.9 ? C1 PUT 350 B 1 
HETATM 6 N N1 PUT . . . C 3 24.32 -23.083 24.272 1 32.32 ? N1 PUT 350 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           571 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           6 
#