data_3DZ4
#
_model_server_result.job_id            RagOmhIKTo_c1D_13eizuw 
_model_server_result.datetime_utc      '2024-11-13 08:35:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dz4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":350}' 
#
_entry.id    3DZ4 
#
_exptl.entry_id    3DZ4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.151 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,4-DIAMINOBUTANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.52 
_cell.angle_gamma         90 
_cell.entry_id            3DZ4 
_cell.length_a            99.818 
_cell.length_b            50.949 
_cell.length_c            68.985 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DZ4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            C 
_struct_conn.ptnr1_label_comp_id            PYR 
_struct_conn.ptnr1_label_seq_id             1 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             PYR 
_struct_conn.ptnr1_auth_seq_id              68 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            N 
_struct_conn.ptnr2_label_comp_id            SER 
_struct_conn.ptnr2_label_seq_id             2 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             SER 
_struct_conn.ptnr2_auth_seq_id              69 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.529 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C4 H12 N2' 
_chem_comp.formula_weight    88.151 
_chem_comp.id                PUT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,4-DIAMINOBUTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PUTRESCINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N2 C4 PUT sing 328 n n 
N2 HN21 PUT sing 329 n n 
N2 HN22 PUT sing 330 n n 
C4 C3 PUT sing 331 n n 
C4 H41 PUT sing 332 n n 
C4 H42 PUT sing 333 n n 
C3 C2 PUT sing 334 n n 
C3 H31 PUT sing 335 n n 
C3 H32 PUT sing 336 n n 
C2 C1 PUT sing 337 n n 
C2 H21 PUT sing 338 n n 
C2 H22 PUT sing 339 n n 
C1 N1 PUT sing 340 n n 
C1 H11 PUT sing 341 n n 
C1 H12 PUT sing 342 n n 
N1 HN11 PUT sing 343 n n 
N1 HN12 PUT sing 344 n n 
#
_atom_sites.entry_id                     3DZ4 
_atom_sites.fract_transf_matrix[1][1]    0.010018 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002782 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019627 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015044 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PUT B 1 350 350 PUT PUT . 
D 4 C8M A 1 368 368 C8M C8M . 
E 5 HOH B 1 351 8 HOH HOH . 
E 5 HOH B 2 352 9 HOH HOH . 
E 5 HOH B 3 353 11 HOH HOH . 
E 5 HOH B 4 354 13 HOH HOH . 
E 5 HOH B 5 355 15 HOH HOH . 
E 5 HOH B 6 356 19 HOH HOH . 
E 5 HOH B 7 357 25 HOH HOH . 
E 5 HOH B 8 358 29 HOH HOH . 
E 5 HOH B 9 359 34 HOH HOH . 
E 5 HOH B 10 360 36 HOH HOH . 
E 5 HOH B 11 361 38 HOH HOH . 
E 5 HOH B 12 362 40 HOH HOH . 
E 5 HOH B 13 363 47 HOH HOH . 
E 5 HOH B 14 364 49 HOH HOH . 
E 5 HOH B 15 365 50 HOH HOH . 
E 5 HOH B 16 366 52 HOH HOH . 
E 5 HOH B 17 367 59 HOH HOH . 
E 5 HOH B 18 368 60 HOH HOH . 
E 5 HOH B 19 369 65 HOH HOH . 
E 5 HOH B 20 370 67 HOH HOH . 
E 5 HOH B 21 371 74 HOH HOH . 
E 5 HOH B 22 372 77 HOH HOH . 
E 5 HOH B 23 373 79 HOH HOH . 
E 5 HOH B 24 374 80 HOH HOH . 
E 5 HOH B 25 375 81 HOH HOH . 
E 5 HOH B 26 376 91 HOH HOH . 
E 5 HOH B 27 377 92 HOH HOH . 
E 5 HOH B 28 378 94 HOH HOH . 
E 5 HOH B 29 379 98 HOH HOH . 
E 5 HOH B 30 380 101 HOH HOH . 
E 5 HOH B 31 381 104 HOH HOH . 
E 5 HOH B 32 382 105 HOH HOH . 
E 5 HOH B 33 383 118 HOH HOH . 
E 5 HOH B 34 384 127 HOH HOH . 
E 5 HOH B 35 385 128 HOH HOH . 
E 5 HOH B 36 386 134 HOH HOH . 
E 5 HOH B 37 387 135 HOH HOH . 
E 5 HOH B 38 388 136 HOH HOH . 
E 5 HOH B 39 389 140 HOH HOH . 
E 5 HOH B 40 390 143 HOH HOH . 
E 5 HOH B 41 391 147 HOH HOH . 
E 5 HOH B 42 392 149 HOH HOH . 
E 5 HOH B 43 393 152 HOH HOH . 
E 5 HOH B 44 394 156 HOH HOH . 
E 5 HOH B 45 395 160 HOH HOH . 
E 5 HOH B 46 396 164 HOH HOH . 
E 5 HOH B 47 397 168 HOH HOH . 
E 5 HOH B 48 398 169 HOH HOH . 
E 5 HOH B 49 399 178 HOH HOH . 
E 5 HOH B 50 400 186 HOH HOH . 
E 5 HOH B 51 401 188 HOH HOH . 
E 5 HOH B 52 402 197 HOH HOH . 
E 5 HOH B 53 403 200 HOH HOH . 
E 5 HOH B 54 404 46 HOH HOH . 
F 5 HOH A 1 369 1 HOH HOH . 
F 5 HOH A 2 370 2 HOH HOH . 
F 5 HOH A 3 371 3 HOH HOH . 
F 5 HOH A 4 372 4 HOH HOH . 
F 5 HOH A 5 373 5 HOH HOH . 
F 5 HOH A 6 374 6 HOH HOH . 
F 5 HOH A 7 375 7 HOH HOH . 
F 5 HOH A 8 376 10 HOH HOH . 
F 5 HOH A 9 377 12 HOH HOH . 
F 5 HOH A 10 378 14 HOH HOH . 
F 5 HOH A 11 379 16 HOH HOH . 
F 5 HOH A 12 380 17 HOH HOH . 
F 5 HOH A 13 381 18 HOH HOH . 
F 5 HOH A 14 382 20 HOH HOH . 
F 5 HOH A 15 383 21 HOH HOH . 
F 5 HOH A 16 384 22 HOH HOH . 
F 5 HOH A 17 385 23 HOH HOH . 
F 5 HOH A 18 386 24 HOH HOH . 
F 5 HOH A 19 387 26 HOH HOH . 
F 5 HOH A 20 388 27 HOH HOH . 
F 5 HOH A 21 389 28 HOH HOH . 
F 5 HOH A 22 390 30 HOH HOH . 
F 5 HOH A 23 391 31 HOH HOH . 
F 5 HOH A 24 392 32 HOH HOH . 
F 5 HOH A 25 393 33 HOH HOH . 
F 5 HOH A 26 394 35 HOH HOH . 
F 5 HOH A 27 395 37 HOH HOH . 
F 5 HOH A 28 396 39 HOH HOH . 
F 5 HOH A 29 397 41 HOH HOH . 
F 5 HOH A 30 398 42 HOH HOH . 
F 5 HOH A 31 399 43 HOH HOH . 
F 5 HOH A 32 400 44 HOH HOH . 
F 5 HOH A 33 401 45 HOH HOH . 
F 5 HOH A 34 403 48 HOH HOH . 
F 5 HOH A 35 404 51 HOH HOH . 
F 5 HOH A 36 405 53 HOH HOH . 
F 5 HOH A 37 406 54 HOH HOH . 
F 5 HOH A 38 407 55 HOH HOH . 
F 5 HOH A 39 408 56 HOH HOH . 
F 5 HOH A 40 409 57 HOH HOH . 
F 5 HOH A 41 410 58 HOH HOH . 
F 5 HOH A 42 411 61 HOH HOH . 
F 5 HOH A 43 412 62 HOH HOH . 
F 5 HOH A 44 413 63 HOH HOH . 
F 5 HOH A 45 414 64 HOH HOH . 
F 5 HOH A 46 415 66 HOH HOH . 
F 5 HOH A 47 416 68 HOH HOH . 
F 5 HOH A 48 417 69 HOH HOH . 
F 5 HOH A 49 418 70 HOH HOH . 
F 5 HOH A 50 419 71 HOH HOH . 
F 5 HOH A 51 420 72 HOH HOH . 
F 5 HOH A 52 421 73 HOH HOH . 
F 5 HOH A 53 422 75 HOH HOH . 
F 5 HOH A 54 423 76 HOH HOH . 
F 5 HOH A 55 424 78 HOH HOH . 
F 5 HOH A 56 425 82 HOH HOH . 
F 5 HOH A 57 426 83 HOH HOH . 
F 5 HOH A 58 427 84 HOH HOH . 
F 5 HOH A 59 428 85 HOH HOH . 
F 5 HOH A 60 429 86 HOH HOH . 
F 5 HOH A 61 430 87 HOH HOH . 
F 5 HOH A 62 431 88 HOH HOH . 
F 5 HOH A 63 432 89 HOH HOH . 
F 5 HOH A 64 433 90 HOH HOH . 
F 5 HOH A 65 434 93 HOH HOH . 
F 5 HOH A 66 435 95 HOH HOH . 
F 5 HOH A 67 436 96 HOH HOH . 
F 5 HOH A 68 437 97 HOH HOH . 
F 5 HOH A 69 438 99 HOH HOH . 
F 5 HOH A 70 439 100 HOH HOH . 
F 5 HOH A 71 440 102 HOH HOH . 
F 5 HOH A 72 441 103 HOH HOH . 
F 5 HOH A 73 442 106 HOH HOH . 
F 5 HOH A 74 443 107 HOH HOH . 
F 5 HOH A 75 444 108 HOH HOH . 
F 5 HOH A 76 445 109 HOH HOH . 
F 5 HOH A 77 446 110 HOH HOH . 
F 5 HOH A 78 447 111 HOH HOH . 
F 5 HOH A 79 448 112 HOH HOH . 
F 5 HOH A 80 449 113 HOH HOH . 
F 5 HOH A 81 450 114 HOH HOH . 
F 5 HOH A 82 451 115 HOH HOH . 
F 5 HOH A 83 452 116 HOH HOH . 
F 5 HOH A 84 453 117 HOH HOH . 
F 5 HOH A 85 454 119 HOH HOH . 
F 5 HOH A 86 455 120 HOH HOH . 
F 5 HOH A 87 456 121 HOH HOH . 
F 5 HOH A 88 457 122 HOH HOH . 
F 5 HOH A 89 458 123 HOH HOH . 
F 5 HOH A 90 459 124 HOH HOH . 
F 5 HOH A 91 460 125 HOH HOH . 
F 5 HOH A 92 461 126 HOH HOH . 
F 5 HOH A 93 462 129 HOH HOH . 
F 5 HOH A 94 463 130 HOH HOH . 
F 5 HOH A 95 464 131 HOH HOH . 
F 5 HOH A 96 465 132 HOH HOH . 
F 5 HOH A 97 466 133 HOH HOH . 
F 5 HOH A 98 467 137 HOH HOH . 
F 5 HOH A 99 468 138 HOH HOH . 
F 5 HOH A 100 469 139 HOH HOH . 
F 5 HOH A 101 470 141 HOH HOH . 
F 5 HOH A 102 471 142 HOH HOH . 
F 5 HOH A 103 472 144 HOH HOH . 
F 5 HOH A 104 473 145 HOH HOH . 
F 5 HOH A 105 474 146 HOH HOH . 
F 5 HOH A 106 475 148 HOH HOH . 
F 5 HOH A 107 476 150 HOH HOH . 
F 5 HOH A 108 477 151 HOH HOH . 
F 5 HOH A 109 478 153 HOH HOH . 
F 5 HOH A 110 479 154 HOH HOH . 
F 5 HOH A 111 480 155 HOH HOH . 
F 5 HOH A 112 481 157 HOH HOH . 
F 5 HOH A 113 482 158 HOH HOH . 
F 5 HOH A 114 483 159 HOH HOH . 
F 5 HOH A 115 484 161 HOH HOH . 
F 5 HOH A 116 485 162 HOH HOH . 
F 5 HOH A 117 486 163 HOH HOH . 
F 5 HOH A 118 487 165 HOH HOH . 
F 5 HOH A 119 488 166 HOH HOH . 
F 5 HOH A 120 489 167 HOH HOH . 
F 5 HOH A 121 490 170 HOH HOH . 
F 5 HOH A 122 491 171 HOH HOH . 
F 5 HOH A 123 492 172 HOH HOH . 
F 5 HOH A 124 493 173 HOH HOH . 
F 5 HOH A 125 494 174 HOH HOH . 
F 5 HOH A 126 495 175 HOH HOH . 
F 5 HOH A 127 496 176 HOH HOH . 
F 5 HOH A 128 497 177 HOH HOH . 
F 5 HOH A 129 498 179 HOH HOH . 
F 5 HOH A 130 499 180 HOH HOH . 
F 5 HOH A 131 500 181 HOH HOH . 
F 5 HOH A 132 501 182 HOH HOH . 
F 5 HOH A 133 502 183 HOH HOH . 
F 5 HOH A 134 503 184 HOH HOH . 
F 5 HOH A 135 504 185 HOH HOH . 
F 5 HOH A 136 505 187 HOH HOH . 
F 5 HOH A 137 506 189 HOH HOH . 
F 5 HOH A 138 507 190 HOH HOH . 
F 5 HOH A 139 508 191 HOH HOH . 
F 5 HOH A 140 509 192 HOH HOH . 
F 5 HOH A 141 510 193 HOH HOH . 
F 5 HOH A 142 511 194 HOH HOH . 
F 5 HOH A 143 512 195 HOH HOH . 
F 5 HOH A 144 513 196 HOH HOH . 
F 5 HOH A 145 514 198 HOH HOH . 
F 5 HOH A 146 515 199 HOH HOH . 
F 5 HOH A 147 516 201 HOH HOH . 
F 5 HOH A 148 517 202 HOH HOH . 
F 5 HOH A 149 518 203 HOH HOH . 
F 5 HOH A 150 519 204 HOH HOH . 
F 5 HOH A 151 520 205 HOH HOH . 
F 5 HOH A 152 521 206 HOH HOH . 
F 5 HOH A 153 522 207 HOH HOH . 
F 5 HOH A 154 523 208 HOH HOH . 
F 5 HOH A 155 524 209 HOH HOH . 
F 5 HOH A 156 525 210 HOH HOH . 
F 5 HOH A 157 526 211 HOH HOH . 
F 5 HOH A 158 527 212 HOH HOH . 
F 5 HOH A 159 528 213 HOH HOH . 
F 5 HOH A 160 529 214 HOH HOH . 
F 5 HOH A 161 530 215 HOH HOH . 
F 5 HOH A 162 531 216 HOH HOH . 
F 5 HOH A 163 532 217 HOH HOH . 
F 5 HOH A 164 533 218 HOH HOH . 
F 5 HOH A 165 534 219 HOH HOH . 
F 5 HOH A 166 535 220 HOH HOH . 
F 5 HOH A 167 536 221 HOH HOH . 
F 5 HOH A 168 537 222 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N2 PUT . . . C 3 -30.877 -15.837 55.794 1 21.97 ? N2 PUT 350 B 1 
HETATM 2 C C4 PUT . . . C 3 -31.273 -16.5 57.048 1 23.33 ? C4 PUT 350 B 1 
HETATM 3 C C3 PUT . . . C 3 -31.682 -17.949 56.767 1 20.86 ? C3 PUT 350 B 1 
HETATM 4 C C2 PUT . . . C 3 -32.365 -18.525 58.013 1 22.21 ? C2 PUT 350 B 1 
HETATM 5 C C1 PUT . . . C 3 -32.598 -20.023 57.836 1 22.04 ? C1 PUT 350 B 1 
HETATM 6 N N1 PUT . . . C 3 -33.672 -20.247 56.859 1 23.91 ? N1 PUT 350 B 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#