data_3DZ5
#
_model_server_result.job_id            Snewb-SSxYE3V6OLy6c8hQ 
_model_server_result.datetime_utc      '2024-11-22 11:08:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dz5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":350}' 
#
_entry.id    3DZ5 
#
_exptl.entry_id    3DZ5 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              88.151 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,4-DIAMINOBUTANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.17 
_cell.angle_gamma         90 
_cell.entry_id            3DZ5 
_cell.length_a            96.778 
_cell.length_b            44.458 
_cell.length_c            70.554 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DZ5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C PYR 1 A PYR 68 1_555 B N SER 2 A SER 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? 
covale ? covale2 B CA PYR 1 A PYR 68 1_555 D N1 M8M . A M8M 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? 
#
_chem_comp.formula           'C4 H12 N2' 
_chem_comp.formula_weight    88.151 
_chem_comp.id                PUT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,4-DIAMINOBUTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PUTRESCINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N2 C4 PUT sing 327 n n 
N2 HN21 PUT sing 328 n n 
N2 HN22 PUT sing 329 n n 
C4 C3 PUT sing 330 n n 
C4 H41 PUT sing 331 n n 
C4 H42 PUT sing 332 n n 
C3 C2 PUT sing 333 n n 
C3 H31 PUT sing 334 n n 
C3 H32 PUT sing 335 n n 
C2 C1 PUT sing 336 n n 
C2 H21 PUT sing 337 n n 
C2 H22 PUT sing 338 n n 
C1 N1 PUT sing 339 n n 
C1 H11 PUT sing 340 n n 
C1 H12 PUT sing 341 n n 
N1 HN11 PUT sing 342 n n 
N1 HN12 PUT sing 343 n n 
#
_atom_sites.entry_id                     3DZ5 
_atom_sites.fract_transf_matrix[1][1]    0.010333 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002609 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022493 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014618 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PUT B 1 350 350 PUT PUT . 
D 4 M8M A 1 368 368 M8M M8M . 
E 5 HOH B 1 351 4 HOH HOH . 
E 5 HOH B 2 352 13 HOH HOH . 
E 5 HOH B 3 353 14 HOH HOH . 
E 5 HOH B 4 354 15 HOH HOH . 
E 5 HOH B 5 355 19 HOH HOH . 
E 5 HOH B 6 356 27 HOH HOH . 
E 5 HOH B 7 357 32 HOH HOH . 
E 5 HOH B 8 358 34 HOH HOH . 
E 5 HOH B 9 359 39 HOH HOH . 
E 5 HOH B 10 360 52 HOH HOH . 
E 5 HOH B 11 361 61 HOH HOH . 
E 5 HOH B 12 362 62 HOH HOH . 
E 5 HOH B 13 363 69 HOH HOH . 
F 5 HOH A 1 369 1 HOH HOH . 
F 5 HOH A 2 370 2 HOH HOH . 
F 5 HOH A 3 371 3 HOH HOH . 
F 5 HOH A 4 372 5 HOH HOH . 
F 5 HOH A 5 373 6 HOH HOH . 
F 5 HOH A 6 374 7 HOH HOH . 
F 5 HOH A 7 375 8 HOH HOH . 
F 5 HOH A 8 376 9 HOH HOH . 
F 5 HOH A 9 377 10 HOH HOH . 
F 5 HOH A 10 378 11 HOH HOH . 
F 5 HOH A 11 379 12 HOH HOH . 
F 5 HOH A 12 380 16 HOH HOH . 
F 5 HOH A 13 381 17 HOH HOH . 
F 5 HOH A 14 382 18 HOH HOH . 
F 5 HOH A 15 383 20 HOH HOH . 
F 5 HOH A 16 384 21 HOH HOH . 
F 5 HOH A 17 385 22 HOH HOH . 
F 5 HOH A 18 386 23 HOH HOH . 
F 5 HOH A 19 387 24 HOH HOH . 
F 5 HOH A 20 388 25 HOH HOH . 
F 5 HOH A 21 389 26 HOH HOH . 
F 5 HOH A 22 390 28 HOH HOH . 
F 5 HOH A 23 391 29 HOH HOH . 
F 5 HOH A 24 392 30 HOH HOH . 
F 5 HOH A 25 393 31 HOH HOH . 
F 5 HOH A 26 394 33 HOH HOH . 
F 5 HOH A 27 395 35 HOH HOH . 
F 5 HOH A 28 396 36 HOH HOH . 
F 5 HOH A 29 397 37 HOH HOH . 
F 5 HOH A 30 398 38 HOH HOH . 
F 5 HOH A 31 399 40 HOH HOH . 
F 5 HOH A 32 400 41 HOH HOH . 
F 5 HOH A 33 401 42 HOH HOH . 
F 5 HOH A 34 402 43 HOH HOH . 
F 5 HOH A 35 403 44 HOH HOH . 
F 5 HOH A 36 404 45 HOH HOH . 
F 5 HOH A 37 405 46 HOH HOH . 
F 5 HOH A 38 406 47 HOH HOH . 
F 5 HOH A 39 407 48 HOH HOH . 
F 5 HOH A 40 408 49 HOH HOH . 
F 5 HOH A 41 409 50 HOH HOH . 
F 5 HOH A 42 410 51 HOH HOH . 
F 5 HOH A 43 411 53 HOH HOH . 
F 5 HOH A 44 412 54 HOH HOH . 
F 5 HOH A 45 413 55 HOH HOH . 
F 5 HOH A 46 414 56 HOH HOH . 
F 5 HOH A 47 415 57 HOH HOH . 
F 5 HOH A 48 416 58 HOH HOH . 
F 5 HOH A 49 417 59 HOH HOH . 
F 5 HOH A 50 418 60 HOH HOH . 
F 5 HOH A 51 419 63 HOH HOH . 
F 5 HOH A 52 420 64 HOH HOH . 
F 5 HOH A 53 421 65 HOH HOH . 
F 5 HOH A 54 422 66 HOH HOH . 
F 5 HOH A 55 423 67 HOH HOH . 
F 5 HOH A 56 424 68 HOH HOH . 
F 5 HOH A 57 425 70 HOH HOH . 
F 5 HOH A 58 426 71 HOH HOH . 
F 5 HOH A 59 427 72 HOH HOH . 
F 5 HOH A 60 428 73 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N2 PUT . . . C 3 -20.318 -17.925 23.482 1 24.07 ? N2 PUT 350 B 1 
HETATM 2 C C4 PUT . . . C 3 -20.991 -18.545 24.489 1 28.08 ? C4 PUT 350 B 1 
HETATM 3 C C3 PUT . . . C 3 -21.403 -19.883 24.174 1 28.64 ? C3 PUT 350 B 1 
HETATM 4 C C2 PUT . . . C 3 -22.057 -20.408 25.3 1 28.09 ? C2 PUT 350 B 1 
HETATM 5 C C1 PUT . . . C 3 -22.198 -21.816 25.307 1 30.32 ? C1 PUT 350 B 1 
HETATM 6 N N1 PUT . . . C 3 -23.209 -22.027 24.377 1 28.04 ? N1 PUT 350 B 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#