data_3DZ6
#
_model_server_result.job_id            0psvJu67BQ5aQnoj8Bxt3Q 
_model_server_result.datetime_utc      '2025-03-06 07:44:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dz6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":350}' 
#
_entry.id    3DZ6 
#
_exptl.entry_id    3DZ6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.151 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,4-DIAMINOBUTANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.34 
_cell.angle_gamma         90 
_cell.entry_id            3DZ6 
_cell.length_a            94.434 
_cell.length_b            50.041 
_cell.length_c            70.408 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DZ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            C 
_struct_conn.ptnr1_label_comp_id            PYR 
_struct_conn.ptnr1_label_seq_id             1 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             PYR 
_struct_conn.ptnr1_auth_seq_id              68 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            N 
_struct_conn.ptnr2_label_comp_id            SER 
_struct_conn.ptnr2_label_seq_id             2 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             SER 
_struct_conn.ptnr2_auth_seq_id              69 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.33 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C4 H12 N2' 
_chem_comp.formula_weight    88.151 
_chem_comp.id                PUT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,4-DIAMINOBUTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PUTRESCINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N2 C4 PUT sing 334 n n 
N2 HN21 PUT sing 335 n n 
N2 HN22 PUT sing 336 n n 
C4 C3 PUT sing 337 n n 
C4 H41 PUT sing 338 n n 
C4 H42 PUT sing 339 n n 
C3 C2 PUT sing 340 n n 
C3 H31 PUT sing 341 n n 
C3 H32 PUT sing 342 n n 
C2 C1 PUT sing 343 n n 
C2 H21 PUT sing 344 n n 
C2 H22 PUT sing 345 n n 
C1 N1 PUT sing 346 n n 
C1 H11 PUT sing 347 n n 
C1 H12 PUT sing 348 n n 
N1 HN11 PUT sing 349 n n 
N1 HN12 PUT sing 350 n n 
#
_atom_sites.entry_id                     3DZ6 
_atom_sites.fract_transf_matrix[1][1]    0.010589 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002904 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019984 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014727 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PUT B 1 350 350 PUT PUT . 
D 4 M8E A 1 368 368 M8E M8E . 
E 5 HOH B 1 351 11 HOH HOH . 
E 5 HOH B 2 352 17 HOH HOH . 
E 5 HOH B 3 353 26 HOH HOH . 
E 5 HOH B 4 354 30 HOH HOH . 
E 5 HOH B 5 355 33 HOH HOH . 
E 5 HOH B 6 356 37 HOH HOH . 
E 5 HOH B 7 357 38 HOH HOH . 
E 5 HOH B 8 358 40 HOH HOH . 
E 5 HOH B 9 359 41 HOH HOH . 
E 5 HOH B 10 360 43 HOH HOH . 
E 5 HOH B 11 361 47 HOH HOH . 
E 5 HOH B 12 362 50 HOH HOH . 
E 5 HOH B 13 363 61 HOH HOH . 
E 5 HOH B 14 364 63 HOH HOH . 
E 5 HOH B 15 365 67 HOH HOH . 
E 5 HOH B 16 366 68 HOH HOH . 
E 5 HOH B 17 367 80 HOH HOH . 
E 5 HOH B 18 368 86 HOH HOH . 
E 5 HOH B 19 369 94 HOH HOH . 
E 5 HOH B 20 370 95 HOH HOH . 
E 5 HOH B 21 371 97 HOH HOH . 
E 5 HOH B 22 372 98 HOH HOH . 
E 5 HOH B 23 373 99 HOH HOH . 
E 5 HOH B 24 374 109 HOH HOH . 
E 5 HOH B 25 375 110 HOH HOH . 
E 5 HOH B 26 376 112 HOH HOH . 
E 5 HOH B 27 377 121 HOH HOH . 
E 5 HOH B 28 378 122 HOH HOH . 
E 5 HOH B 29 379 123 HOH HOH . 
E 5 HOH B 30 380 127 HOH HOH . 
E 5 HOH B 31 381 128 HOH HOH . 
F 5 HOH A 1 369 1 HOH HOH . 
F 5 HOH A 2 370 2 HOH HOH . 
F 5 HOH A 3 371 3 HOH HOH . 
F 5 HOH A 4 372 4 HOH HOH . 
F 5 HOH A 5 373 5 HOH HOH . 
F 5 HOH A 6 374 6 HOH HOH . 
F 5 HOH A 7 375 7 HOH HOH . 
F 5 HOH A 8 376 8 HOH HOH . 
F 5 HOH A 9 377 9 HOH HOH . 
F 5 HOH A 10 378 10 HOH HOH . 
F 5 HOH A 11 379 12 HOH HOH . 
F 5 HOH A 12 380 13 HOH HOH . 
F 5 HOH A 13 381 14 HOH HOH . 
F 5 HOH A 14 382 15 HOH HOH . 
F 5 HOH A 15 383 16 HOH HOH . 
F 5 HOH A 16 384 18 HOH HOH . 
F 5 HOH A 17 385 19 HOH HOH . 
F 5 HOH A 18 386 20 HOH HOH . 
F 5 HOH A 19 387 21 HOH HOH . 
F 5 HOH A 20 388 22 HOH HOH . 
F 5 HOH A 21 389 23 HOH HOH . 
F 5 HOH A 22 390 24 HOH HOH . 
F 5 HOH A 23 391 25 HOH HOH . 
F 5 HOH A 24 392 27 HOH HOH . 
F 5 HOH A 25 393 28 HOH HOH . 
F 5 HOH A 26 394 29 HOH HOH . 
F 5 HOH A 27 395 31 HOH HOH . 
F 5 HOH A 28 396 32 HOH HOH . 
F 5 HOH A 29 397 34 HOH HOH . 
F 5 HOH A 30 398 35 HOH HOH . 
F 5 HOH A 31 399 36 HOH HOH . 
F 5 HOH A 32 400 39 HOH HOH . 
F 5 HOH A 33 401 42 HOH HOH . 
F 5 HOH A 34 402 44 HOH HOH . 
F 5 HOH A 35 403 45 HOH HOH . 
F 5 HOH A 36 404 46 HOH HOH . 
F 5 HOH A 37 405 48 HOH HOH . 
F 5 HOH A 38 406 49 HOH HOH . 
F 5 HOH A 39 407 51 HOH HOH . 
F 5 HOH A 40 408 52 HOH HOH . 
F 5 HOH A 41 409 53 HOH HOH . 
F 5 HOH A 42 410 54 HOH HOH . 
F 5 HOH A 43 411 55 HOH HOH . 
F 5 HOH A 44 412 56 HOH HOH . 
F 5 HOH A 45 413 57 HOH HOH . 
F 5 HOH A 46 414 58 HOH HOH . 
F 5 HOH A 47 415 59 HOH HOH . 
F 5 HOH A 48 416 60 HOH HOH . 
F 5 HOH A 49 417 62 HOH HOH . 
F 5 HOH A 50 418 64 HOH HOH . 
F 5 HOH A 51 419 65 HOH HOH . 
F 5 HOH A 52 420 66 HOH HOH . 
F 5 HOH A 53 421 69 HOH HOH . 
F 5 HOH A 54 422 70 HOH HOH . 
F 5 HOH A 55 423 71 HOH HOH . 
F 5 HOH A 56 424 72 HOH HOH . 
F 5 HOH A 57 425 73 HOH HOH . 
F 5 HOH A 58 426 74 HOH HOH . 
F 5 HOH A 59 427 75 HOH HOH . 
F 5 HOH A 60 428 76 HOH HOH . 
F 5 HOH A 61 429 77 HOH HOH . 
F 5 HOH A 62 430 78 HOH HOH . 
F 5 HOH A 63 431 79 HOH HOH . 
F 5 HOH A 64 432 81 HOH HOH . 
F 5 HOH A 65 433 82 HOH HOH . 
F 5 HOH A 66 434 83 HOH HOH . 
F 5 HOH A 67 435 84 HOH HOH . 
F 5 HOH A 68 436 85 HOH HOH . 
F 5 HOH A 69 437 87 HOH HOH . 
F 5 HOH A 70 438 88 HOH HOH . 
F 5 HOH A 71 439 89 HOH HOH . 
F 5 HOH A 72 440 90 HOH HOH . 
F 5 HOH A 73 441 91 HOH HOH . 
F 5 HOH A 74 442 92 HOH HOH . 
F 5 HOH A 75 443 93 HOH HOH . 
F 5 HOH A 76 444 96 HOH HOH . 
F 5 HOH A 77 445 100 HOH HOH . 
F 5 HOH A 78 446 101 HOH HOH . 
F 5 HOH A 79 447 102 HOH HOH . 
F 5 HOH A 80 448 103 HOH HOH . 
F 5 HOH A 81 449 104 HOH HOH . 
F 5 HOH A 82 450 105 HOH HOH . 
F 5 HOH A 83 451 106 HOH HOH . 
F 5 HOH A 84 452 107 HOH HOH . 
F 5 HOH A 85 453 108 HOH HOH . 
F 5 HOH A 86 454 111 HOH HOH . 
F 5 HOH A 87 455 113 HOH HOH . 
F 5 HOH A 88 456 114 HOH HOH . 
F 5 HOH A 89 457 115 HOH HOH . 
F 5 HOH A 90 458 116 HOH HOH . 
F 5 HOH A 91 459 117 HOH HOH . 
F 5 HOH A 92 460 118 HOH HOH . 
F 5 HOH A 93 461 119 HOH HOH . 
F 5 HOH A 94 462 120 HOH HOH . 
F 5 HOH A 95 463 124 HOH HOH . 
F 5 HOH A 96 464 125 HOH HOH . 
F 5 HOH A 97 465 126 HOH HOH . 
F 5 HOH A 98 466 129 HOH HOH . 
F 5 HOH A 99 467 130 HOH HOH . 
F 5 HOH A 100 468 131 HOH HOH . 
F 5 HOH A 101 469 132 HOH HOH . 
F 5 HOH A 102 470 133 HOH HOH . 
F 5 HOH A 103 471 134 HOH HOH . 
F 5 HOH A 104 472 135 HOH HOH . 
F 5 HOH A 105 473 136 HOH HOH . 
F 5 HOH A 106 474 137 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N2 PUT . . . C 3 -20.883 -17.748 22.601 1 38.6 ? N2 PUT 350 B 1 
HETATM 2 C C4 PUT . . . C 3 -21.877 -18.171 23.413 1 39.52 ? C4 PUT 350 B 1 
HETATM 3 C C3 PUT . . . C 3 -22.236 -19.65 23.339 1 40.06 ? C3 PUT 350 B 1 
HETATM 4 C C2 PUT . . . C 3 -22.394 -20.192 24.602 1 40.14 ? C2 PUT 350 B 1 
HETATM 5 C C1 PUT . . . C 3 -22.962 -21.585 24.726 1 40.96 ? C1 PUT 350 B 1 
HETATM 6 N N1 PUT . . . C 3 -24.101 -21.978 23.815 1 40.67 ? N1 PUT 350 B 1 
#
_model_server_stats.io_time_ms              183 
_model_server_stats.parse_time_ms           125 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#