data_3DZE # _model_server_result.job_id 9NrJx8a1eTt7g8EcSn3F-g _model_server_result.datetime_utc '2025-03-05 20:28:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dze # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":177}' # _entry.id 3DZE # _exptl.entry_id 3DZE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.58 _cell.angle_gamma 90 _cell.entry_id 3DZE _cell.length_a 108.01 _cell.length_b 49.924 _cell.length_c 36.942 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DZE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 35 A GLY 34 1_555 D MG MG . A MG 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc2 A O THR 69 A THR 68 1_555 D MG MG . A MG 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc3 C CD CD . A CD 177 1_555 E O HOH . A HOH 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc4 C CD CD . A CD 177 1_555 E O HOH . A HOH 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc5 C CD CD . A CD 177 1_555 E O HOH . A HOH 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc6 D MG MG . A MG 178 1_555 E O HOH . A HOH 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc7 D MG MG . A MG 178 1_555 E O HOH . A HOH 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3DZE _atom_sites.fract_transf_matrix[1][1] 0.009258 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003293 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02003 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 176 1 TRS TRS . C 3 CD A 1 177 1 CD CD . D 4 MG A 1 178 1 MG MG . E 5 HOH A 1 179 1 HOH HOH . E 5 HOH A 2 180 2 HOH HOH . E 5 HOH A 3 181 3 HOH HOH . E 5 HOH A 4 182 4 HOH HOH . E 5 HOH A 5 183 5 HOH HOH . E 5 HOH A 6 184 6 HOH HOH . E 5 HOH A 7 185 7 HOH HOH . E 5 HOH A 8 186 8 HOH HOH . E 5 HOH A 9 187 9 HOH HOH . E 5 HOH A 10 188 10 HOH HOH . E 5 HOH A 11 189 11 HOH HOH . E 5 HOH A 12 190 12 HOH HOH . E 5 HOH A 13 191 13 HOH HOH . E 5 HOH A 14 192 14 HOH HOH . E 5 HOH A 15 193 15 HOH HOH . E 5 HOH A 16 194 16 HOH HOH . E 5 HOH A 17 195 17 HOH HOH . E 5 HOH A 18 196 18 HOH HOH . E 5 HOH A 19 197 19 HOH HOH . E 5 HOH A 20 198 20 HOH HOH . E 5 HOH A 21 199 21 HOH HOH . E 5 HOH A 22 200 22 HOH HOH . E 5 HOH A 23 201 23 HOH HOH . E 5 HOH A 24 202 24 HOH HOH . E 5 HOH A 25 203 25 HOH HOH . E 5 HOH A 26 204 26 HOH HOH . E 5 HOH A 27 205 27 HOH HOH . E 5 HOH A 28 206 28 HOH HOH . E 5 HOH A 29 207 29 HOH HOH . E 5 HOH A 30 208 30 HOH HOH . E 5 HOH A 31 209 31 HOH HOH . E 5 HOH A 32 210 32 HOH HOH . E 5 HOH A 33 211 33 HOH HOH . E 5 HOH A 34 212 34 HOH HOH . E 5 HOH A 35 213 35 HOH HOH . E 5 HOH A 36 214 36 HOH HOH . E 5 HOH A 37 215 37 HOH HOH . E 5 HOH A 38 216 38 HOH HOH . E 5 HOH A 39 217 39 HOH HOH . E 5 HOH A 40 218 40 HOH HOH . E 5 HOH A 41 219 41 HOH HOH . E 5 HOH A 42 220 42 HOH HOH . E 5 HOH A 43 221 43 HOH HOH . E 5 HOH A 44 222 44 HOH HOH . E 5 HOH A 45 223 45 HOH HOH . E 5 HOH A 46 224 46 HOH HOH . E 5 HOH A 47 225 47 HOH HOH . E 5 HOH A 48 226 48 HOH HOH . E 5 HOH A 49 227 49 HOH HOH . E 5 HOH A 50 228 50 HOH HOH . E 5 HOH A 51 229 51 HOH HOH . E 5 HOH A 52 230 52 HOH HOH . E 5 HOH A 53 231 53 HOH HOH . E 5 HOH A 54 232 54 HOH HOH . E 5 HOH A 55 233 55 HOH HOH . E 5 HOH A 56 234 56 HOH HOH . E 5 HOH A 57 235 57 HOH HOH . E 5 HOH A 58 236 58 HOH HOH . E 5 HOH A 59 237 59 HOH HOH . E 5 HOH A 60 238 60 HOH HOH . E 5 HOH A 61 239 61 HOH HOH . E 5 HOH A 62 240 62 HOH HOH . E 5 HOH A 63 241 63 HOH HOH . E 5 HOH A 64 242 64 HOH HOH . E 5 HOH A 65 243 65 HOH HOH . E 5 HOH A 66 244 66 HOH HOH . E 5 HOH A 67 245 67 HOH HOH . E 5 HOH A 68 246 68 HOH HOH . E 5 HOH A 69 247 69 HOH HOH . E 5 HOH A 70 248 70 HOH HOH . E 5 HOH A 71 249 71 HOH HOH . E 5 HOH A 72 250 72 HOH HOH . E 5 HOH A 73 251 73 HOH HOH . E 5 HOH A 74 252 74 HOH HOH . E 5 HOH A 75 253 75 HOH HOH . E 5 HOH A 76 254 76 HOH HOH . E 5 HOH A 77 255 77 HOH HOH . E 5 HOH A 78 256 78 HOH HOH . E 5 HOH A 79 257 79 HOH HOH . E 5 HOH A 80 258 80 HOH HOH . E 5 HOH A 81 259 81 HOH HOH . E 5 HOH A 82 260 82 HOH HOH . E 5 HOH A 83 261 83 HOH HOH . E 5 HOH A 84 262 84 HOH HOH . E 5 HOH A 85 263 85 HOH HOH . E 5 HOH A 86 264 86 HOH HOH . E 5 HOH A 87 265 87 HOH HOH . E 5 HOH A 88 266 88 HOH HOH . E 5 HOH A 89 267 89 HOH HOH . E 5 HOH A 90 268 90 HOH HOH . E 5 HOH A 91 269 91 HOH HOH . E 5 HOH A 92 270 92 HOH HOH . E 5 HOH A 93 271 93 HOH HOH . E 5 HOH A 94 272 94 HOH HOH . E 5 HOH A 95 273 95 HOH HOH . E 5 HOH A 96 274 96 HOH HOH . E 5 HOH A 97 275 97 HOH HOH . E 5 HOH A 98 276 98 HOH HOH . E 5 HOH A 99 277 99 HOH HOH . E 5 HOH A 100 278 100 HOH HOH . E 5 HOH A 101 279 101 HOH HOH . E 5 HOH A 102 280 102 HOH HOH . E 5 HOH A 103 281 103 HOH HOH . E 5 HOH A 104 282 104 HOH HOH . E 5 HOH A 105 283 105 HOH HOH . E 5 HOH A 106 284 106 HOH HOH . E 5 HOH A 107 285 107 HOH HOH . E 5 HOH A 108 286 108 HOH HOH . E 5 HOH A 109 287 109 HOH HOH . E 5 HOH A 110 288 110 HOH HOH . E 5 HOH A 111 289 111 HOH HOH . E 5 HOH A 112 290 112 HOH HOH . E 5 HOH A 113 291 113 HOH HOH . E 5 HOH A 114 292 114 HOH HOH . E 5 HOH A 115 293 115 HOH HOH . E 5 HOH A 116 294 116 HOH HOH . E 5 HOH A 117 295 117 HOH HOH . E 5 HOH A 118 296 118 HOH HOH . E 5 HOH A 119 297 119 HOH HOH . E 5 HOH A 120 298 120 HOH HOH . E 5 HOH A 121 299 121 HOH HOH . E 5 HOH A 122 300 122 HOH HOH . E 5 HOH A 123 301 123 HOH HOH . E 5 HOH A 124 302 124 HOH HOH . E 5 HOH A 125 303 125 HOH HOH . E 5 HOH A 126 304 126 HOH HOH . E 5 HOH A 127 305 127 HOH HOH . E 5 HOH A 128 306 128 HOH HOH . E 5 HOH A 129 307 129 HOH HOH . E 5 HOH A 130 308 130 HOH HOH . E 5 HOH A 131 309 131 HOH HOH . E 5 HOH A 132 310 132 HOH HOH . E 5 HOH A 133 311 133 HOH HOH . E 5 HOH A 134 312 134 HOH HOH . E 5 HOH A 135 313 135 HOH HOH . E 5 HOH A 136 314 136 HOH HOH . E 5 HOH A 137 315 137 HOH HOH . E 5 HOH A 138 316 138 HOH HOH . E 5 HOH A 139 317 139 HOH HOH . E 5 HOH A 140 318 140 HOH HOH . E 5 HOH A 141 319 141 HOH HOH . E 5 HOH A 142 320 142 HOH HOH . E 5 HOH A 143 321 143 HOH HOH . E 5 HOH A 144 322 144 HOH HOH . E 5 HOH A 145 323 145 HOH HOH . E 5 HOH A 146 324 146 HOH HOH . E 5 HOH A 147 325 147 HOH HOH . E 5 HOH A 148 326 148 HOH HOH . E 5 HOH A 149 327 149 HOH HOH . E 5 HOH A 150 328 150 HOH HOH . E 5 HOH A 151 329 151 HOH HOH . E 5 HOH A 152 330 152 HOH HOH . E 5 HOH A 153 331 153 HOH HOH . E 5 HOH A 154 332 154 HOH HOH . E 5 HOH A 155 333 155 HOH HOH . E 5 HOH A 156 334 156 HOH HOH . E 5 HOH A 157 335 157 HOH HOH . E 5 HOH A 158 336 158 HOH HOH . E 5 HOH A 159 337 159 HOH HOH . E 5 HOH A 160 338 160 HOH HOH . E 5 HOH A 161 339 161 HOH HOH . E 5 HOH A 162 340 162 HOH HOH . E 5 HOH A 163 341 163 HOH HOH . E 5 HOH A 164 342 164 HOH HOH . E 5 HOH A 165 343 165 HOH HOH . E 5 HOH A 166 344 166 HOH HOH . E 5 HOH A 167 345 167 HOH HOH . E 5 HOH A 168 346 168 HOH HOH . E 5 HOH A 169 347 169 HOH HOH . E 5 HOH A 170 348 170 HOH HOH . E 5 HOH A 171 349 171 HOH HOH . E 5 HOH A 172 350 172 HOH HOH . E 5 HOH A 173 351 173 HOH HOH . E 5 HOH A 174 352 174 HOH HOH . E 5 HOH A 175 353 175 HOH HOH . E 5 HOH A 176 354 176 HOH HOH . E 5 HOH A 177 355 177 HOH HOH . E 5 HOH A 178 356 178 HOH HOH . E 5 HOH A 179 357 179 HOH HOH . E 5 HOH A 180 358 180 HOH HOH . E 5 HOH A 181 359 181 HOH HOH . E 5 HOH A 182 360 182 HOH HOH . E 5 HOH A 183 361 183 HOH HOH . E 5 HOH A 184 362 184 HOH HOH . E 5 HOH A 185 363 185 HOH HOH . E 5 HOH A 186 364 186 HOH HOH . E 5 HOH A 187 365 187 HOH HOH . E 5 HOH A 188 366 188 HOH HOH . E 5 HOH A 189 367 189 HOH HOH . E 5 HOH A 190 368 190 HOH HOH . E 5 HOH A 191 369 191 HOH HOH . E 5 HOH A 192 370 192 HOH HOH . E 5 HOH A 193 371 193 HOH HOH . E 5 HOH A 194 372 194 HOH HOH . E 5 HOH A 195 373 195 HOH HOH . E 5 HOH A 196 374 196 HOH HOH . E 5 HOH A 197 375 197 HOH HOH . E 5 HOH A 198 376 198 HOH HOH . E 5 HOH A 199 377 199 HOH HOH . E 5 HOH A 200 378 200 HOH HOH . E 5 HOH A 201 379 201 HOH HOH . E 5 HOH A 202 380 202 HOH HOH . E 5 HOH A 203 381 203 HOH HOH . E 5 HOH A 204 382 204 HOH HOH . E 5 HOH A 205 383 205 HOH HOH . E 5 HOH A 206 384 206 HOH HOH . E 5 HOH A 207 385 207 HOH HOH . E 5 HOH A 208 386 208 HOH HOH . E 5 HOH A 209 387 209 HOH HOH . E 5 HOH A 210 388 210 HOH HOH . E 5 HOH A 211 389 211 HOH HOH . E 5 HOH A 212 390 212 HOH HOH . E 5 HOH A 213 391 213 HOH HOH . E 5 HOH A 214 392 214 HOH HOH . E 5 HOH A 215 393 215 HOH HOH . E 5 HOH A 216 394 216 HOH HOH . E 5 HOH A 217 395 217 HOH HOH . E 5 HOH A 218 396 218 HOH HOH . E 5 HOH A 219 397 219 HOH HOH . E 5 HOH A 220 398 220 HOH HOH . E 5 HOH A 221 399 221 HOH HOH . E 5 HOH A 222 400 222 HOH HOH . E 5 HOH A 223 401 223 HOH HOH . E 5 HOH A 224 402 224 HOH HOH . E 5 HOH A 225 403 225 HOH HOH . E 5 HOH A 226 404 226 HOH HOH . E 5 HOH A 227 405 227 HOH HOH . E 5 HOH A 228 406 228 HOH HOH . E 5 HOH A 229 407 229 HOH HOH . E 5 HOH A 230 408 230 HOH HOH . E 5 HOH A 231 409 231 HOH HOH . E 5 HOH A 232 410 232 HOH HOH . E 5 HOH A 233 411 233 HOH HOH . E 5 HOH A 234 412 234 HOH HOH . E 5 HOH A 235 413 235 HOH HOH . E 5 HOH A 236 414 236 HOH HOH . E 5 HOH A 237 415 237 HOH HOH . E 5 HOH A 238 416 238 HOH HOH . E 5 HOH A 239 417 239 HOH HOH . E 5 HOH A 240 418 240 HOH HOH . E 5 HOH A 241 419 241 HOH HOH . E 5 HOH A 242 420 242 HOH HOH . E 5 HOH A 243 421 243 HOH HOH . E 5 HOH A 244 422 244 HOH HOH . E 5 HOH A 245 423 245 HOH HOH . E 5 HOH A 246 424 246 HOH HOH . E 5 HOH A 247 425 247 HOH HOH . E 5 HOH A 248 426 248 HOH HOH . E 5 HOH A 249 427 249 HOH HOH . E 5 HOH A 250 428 250 HOH HOH . E 5 HOH A 251 429 251 HOH HOH . E 5 HOH A 252 430 252 HOH HOH . E 5 HOH A 253 431 253 HOH HOH . E 5 HOH A 254 432 254 HOH HOH . E 5 HOH A 255 433 255 HOH HOH . E 5 HOH A 256 434 256 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -18.13 _atom_site.Cartn_y 24.169 _atom_site.Cartn_z 1.258 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.04 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 177 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #