data_3DZM
#
_model_server_result.job_id            fyITm7iHq1B4_vbCvmea4g 
_model_server_result.datetime_utc      '2024-10-11 08:31:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dzm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":209}' 
#
_entry.id    3DZM 
#
_exptl.entry_id    3DZM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              306.438 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3DZM 
_cell.length_a            166.98 
_cell.length_b            166.98 
_cell.length_c            98.12 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DZM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
PISA hexameric 6 software_defined_assembly 4 
PISA trimeric 3 software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,M 1 1 
B,G,H,I,N 2 1 
C,J,K,L,O 3 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 4 1,2 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 5 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -65.413333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 H N N 
? 3 I N N 
? 3 K N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 166 A CYS 159 1_555 A SG CYS 184 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 B SG CYS 166 B CYS 159 1_555 B SG CYS 184 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf3 C SG CYS 166 C CYS 159 1_555 C SG CYS 184 C CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc1 A OD1 ASP 52 A ASP 45 1_555 D CA CA . A CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? 
metalc ? metalc2 A O LEU 54 A LEU 47 1_555 D CA CA . A CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? 
metalc ? metalc3 A OD1 ASP 56 A ASP 49 1_555 D CA CA . A CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? 
metalc ? metalc4 A OE2 GLU 77 A GLU 70 1_555 D CA CA . A CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? 
metalc ? metalc5 B O LEU 54 B LEU 47 1_555 G CA CA . B CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
metalc ? metalc6 B OD1 ASP 56 B ASP 49 1_555 G CA CA . B CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? 
metalc ? metalc7 B OE1 GLU 77 B GLU 70 1_555 G CA CA . B CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? 
metalc ? metalc8 B OE2 GLU 77 B GLU 70 1_555 G CA CA . B CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? 
metalc ? metalc9 C OD1 ASP 52 C ASP 45 1_555 J CA CA . C CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? 
metalc ? metalc10 C O LEU 54 C LEU 47 1_555 J CA CA . C CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? 
metalc ? metalc11 C OD1 ASP 56 C ASP 49 1_555 J CA CA . C CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? 
metalc ? metalc12 C OE1 GLU 77 C GLU 70 1_555 J CA CA . C CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? 
#
_chem_comp.formula           'C16 H34 O5' 
_chem_comp.formula_weight    306.438 
_chem_comp.id                C8E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3DZM 
_atom_sites.fract_transf_matrix[1][1]    0.005989 
_atom_sites.fract_transf_matrix[1][2]    0.003458 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006915 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010192 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 CA A 1 208 1 CA CA . 
E 3 C8E A 1 209 1 C8E C8E . 
F 3 C8E A 1 210 1 C8E C8E . 
G 2 CA B 1 208 2 CA CA . 
H 3 C8E B 1 209 1 C8E C8E . 
I 3 C8E B 1 210 1 C8E C8E . 
J 2 CA C 1 208 3 CA CA . 
K 3 C8E C 1 209 1 C8E C8E . 
L 3 C8E C 1 210 1 C8E C8E . 
M 4 HOH A 1 211 2 HOH HOH . 
M 4 HOH A 2 212 3 HOH HOH . 
M 4 HOH A 3 213 4 HOH HOH . 
M 4 HOH A 4 214 10 HOH HOH . 
M 4 HOH A 5 215 18 HOH HOH . 
M 4 HOH A 6 216 19 HOH HOH . 
M 4 HOH A 7 217 23 HOH HOH . 
M 4 HOH A 8 218 25 HOH HOH . 
M 4 HOH A 9 219 29 HOH HOH . 
M 4 HOH A 10 220 30 HOH HOH . 
M 4 HOH A 11 221 33 HOH HOH . 
N 4 HOH B 1 211 5 HOH HOH . 
N 4 HOH B 2 212 6 HOH HOH . 
N 4 HOH B 3 213 7 HOH HOH . 
N 4 HOH B 4 214 8 HOH HOH . 
N 4 HOH B 5 215 9 HOH HOH . 
N 4 HOH B 6 216 11 HOH HOH . 
N 4 HOH B 7 217 20 HOH HOH . 
N 4 HOH B 8 218 22 HOH HOH . 
N 4 HOH B 9 219 26 HOH HOH . 
N 4 HOH B 10 220 28 HOH HOH . 
N 4 HOH B 11 221 31 HOH HOH . 
N 4 HOH B 12 222 34 HOH HOH . 
N 4 HOH B 13 223 37 HOH HOH . 
N 4 HOH B 14 224 40 HOH HOH . 
N 4 HOH B 15 225 41 HOH HOH . 
O 4 HOH C 1 211 1 HOH HOH . 
O 4 HOH C 2 212 12 HOH HOH . 
O 4 HOH C 3 213 13 HOH HOH . 
O 4 HOH C 4 214 14 HOH HOH . 
O 4 HOH C 5 215 15 HOH HOH . 
O 4 HOH C 6 216 16 HOH HOH . 
O 4 HOH C 7 217 17 HOH HOH . 
O 4 HOH C 8 218 21 HOH HOH . 
O 4 HOH C 9 219 24 HOH HOH . 
O 4 HOH C 10 220 27 HOH HOH . 
O 4 HOH C 11 221 32 HOH HOH . 
O 4 HOH C 12 222 35 HOH HOH . 
O 4 HOH C 13 223 36 HOH HOH . 
O 4 HOH C 14 224 38 HOH HOH . 
O 4 HOH C 15 225 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 C8E . . . K 3 47.647 -60.196 -9.63 0 129.08 ? C1 C8E 209 C 1 
HETATM 2 C C2 C8E . . . K 3 47.788 -58.886 -8.864 0 129.15 ? C2 C8E 209 C 1 
HETATM 3 C C3 C8E . . . K 3 46.862 -58.845 -7.653 0 129.28 ? C3 C8E 209 C 1 
HETATM 4 C C4 C8E . . . K 3 46.459 -60.247 -7.209 0 129.46 ? C4 C8E 209 C 1 
HETATM 5 C C5 C8E . . . K 3 45.035 -60.259 -6.667 0 129.65 ? C5 C8E 209 C 1 
HETATM 6 C C6 C8E . . . K 3 44.248 -61.472 -7.152 0 129.88 ? C6 C8E 209 C 1 
HETATM 7 C C7 C8E . . . K 3 43.372 -61.112 -8.346 0 130.12 ? C7 C8E 209 C 1 
HETATM 8 C C8 C8E . . . K 3 42.046 -61.861 -8.305 1 130.32 ? C8 C8E 209 C 1 
HETATM 9 O O9 C8E . . . K 3 41.032 -60.891 -8.133 1 136.89 ? O9 C8E 209 C 1 
HETATM 10 C C10 C8E . . . K 3 39.872 -61.097 -8.909 1 142.84 ? C10 C8E 209 C 1 
HETATM 11 C C11 C8E . . . K 3 39.058 -59.817 -9.13 1 146.69 ? C11 C8E 209 C 1 
HETATM 12 O O12 C8E . . . K 3 37.941 -59.745 -8.264 1 148.62 ? O12 C8E 209 C 1 
HETATM 13 C C13 C8E . . . K 3 36.995 -58.796 -8.716 1 149.93 ? C13 C8E 209 C 1 
HETATM 14 C C14 C8E . . . K 3 35.909 -58.549 -7.669 1 154.66 ? C14 C8E 209 C 1 
HETATM 15 O O15 C8E . . . K 3 34.798 -59.432 -7.774 1 156.74 ? O15 C8E 209 C 1 
HETATM 16 C C16 C8E . . . K 3 33.588 -58.828 -8.219 1 158.04 ? C16 C8E 209 C 1 
HETATM 17 C C17 C8E . . . K 3 33.634 -57.297 -8.174 1 155.07 ? C17 C8E 209 C 1 
HETATM 18 O O18 C8E . . . K 3 34.148 -56.765 -9.387 1 147.42 ? O18 C8E 209 C 1 
HETATM 19 C C19 C8E . . . K 3 33.389 -55.683 -9.882 1 134.62 ? C19 C8E 209 C 1 
HETATM 20 C C20 C8E . . . K 3 33.965 -54.366 -9.358 1 119.01 ? C20 C8E 209 C 1 
HETATM 21 O O21 C8E . . . K 3 34.314 -54.418 -7.982 1 103.53 ? O21 C8E 209 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           21 
#