data_3DZV # _model_server_result.job_id DhwEHMjgsVo7s4ShQe288Q _model_server_result.datetime_utc '2024-11-13 02:58:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dzv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":273}' # _entry.id 3DZV # _exptl.entry_id 3DZV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DZV _cell.length_a 181.705 _cell.length_b 181.705 _cell.length_c 181.705 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DZV _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1,2,3 B,F,G,H,J 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 2 A MSE 1 1_555 A N LYS 3 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale2 A C SER 31 A SER 30 1_555 A N MSE 32 A MSE 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C MSE 32 A MSE 31 1_555 A N ALA 33 A ALA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C ILE 44 A ILE 43 1_555 A N MSE 45 A MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C MSE 45 A MSE 44 1_555 A N ALA 46 A ALA 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 A C GLN 54 A GLN 53 1_555 A N MSE 55 A MSE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 A C MSE 55 A MSE 54 1_555 A N PHE 56 A PHE 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 A C GLU 125 A GLU 124 1_555 A N MSE 126 A MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C MSE 126 A MSE 125 1_555 A N ARG 127 A ARG 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale10 A C PRO 219 A PRO 218 1_555 A N MSE 220 A MSE 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale11 A C MSE 220 A MSE 219 1_555 A N THR 221 A THR 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale12 A C LEU 258 A LEU 257 1_555 A N MSE 259 A MSE 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale13 A C MSE 259 A MSE 258 1_555 A N LYS 260 A LYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale14 B C MSE 2 B MSE 1 1_555 B N LYS 3 B LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale15 B C SER 31 B SER 30 1_555 B N MSE 32 B MSE 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale16 B C MSE 32 B MSE 31 1_555 B N ALA 33 B ALA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 B C ILE 44 B ILE 43 1_555 B N MSE 45 B MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale18 B C MSE 45 B MSE 44 1_555 B N ALA 46 B ALA 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale19 B C GLN 54 B GLN 53 1_555 B N MSE 55 B MSE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale20 B C MSE 55 B MSE 54 1_555 B N PHE 56 B PHE 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale21 B C GLU 125 B GLU 124 1_555 B N MSE 126 B MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale22 B C MSE 126 B MSE 125 1_555 B N ARG 127 B ARG 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale23 B C PRO 219 B PRO 218 1_555 B N MSE 220 B MSE 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale24 B C MSE 220 B MSE 219 1_555 B N THR 221 B THR 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale25 B C LEU 258 B LEU 257 1_555 B N MSE 259 B MSE 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale26 B C MSE 259 B MSE 258 1_555 B N LYS 260 B LYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 334 n n S O2 SO4 doub 335 n n S O3 SO4 sing 336 n n S O4 SO4 sing 337 n n # _atom_sites.entry_id 3DZV _atom_sites.fract_transf_matrix[1][1] 0.005503 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005503 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005503 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 273 1 SO4 SO4 . D 2 SO4 A 1 274 4 SO4 SO4 . E 3 ADP A 1 500 500 ADP ADP . F 2 SO4 B 1 273 2 SO4 SO4 . G 2 SO4 B 1 274 3 SO4 SO4 . H 3 ADP B 1 500 500 ADP ADP . I 4 HOH A 1 501 5 HOH HOH . I 4 HOH A 2 502 6 HOH HOH . I 4 HOH A 3 503 9 HOH HOH . I 4 HOH A 4 504 10 HOH HOH . I 4 HOH A 5 505 11 HOH HOH . I 4 HOH A 6 506 12 HOH HOH . I 4 HOH A 7 507 14 HOH HOH . I 4 HOH A 8 508 15 HOH HOH . I 4 HOH A 9 509 17 HOH HOH . I 4 HOH A 10 510 19 HOH HOH . I 4 HOH A 11 511 20 HOH HOH . I 4 HOH A 12 512 22 HOH HOH . I 4 HOH A 13 513 23 HOH HOH . I 4 HOH A 14 514 28 HOH HOH . I 4 HOH A 15 515 30 HOH HOH . I 4 HOH A 16 516 31 HOH HOH . I 4 HOH A 17 517 34 HOH HOH . I 4 HOH A 18 518 36 HOH HOH . I 4 HOH A 19 519 38 HOH HOH . I 4 HOH A 20 520 41 HOH HOH . I 4 HOH A 21 521 42 HOH HOH . I 4 HOH A 22 522 43 HOH HOH . I 4 HOH A 23 523 44 HOH HOH . I 4 HOH A 24 524 46 HOH HOH . I 4 HOH A 25 525 47 HOH HOH . I 4 HOH A 26 526 48 HOH HOH . I 4 HOH A 27 527 49 HOH HOH . I 4 HOH A 28 528 51 HOH HOH . I 4 HOH A 29 529 53 HOH HOH . I 4 HOH A 30 530 54 HOH HOH . I 4 HOH A 31 531 56 HOH HOH . I 4 HOH A 32 532 59 HOH HOH . I 4 HOH A 33 533 60 HOH HOH . I 4 HOH A 34 534 61 HOH HOH . I 4 HOH A 35 535 63 HOH HOH . I 4 HOH A 36 536 65 HOH HOH . I 4 HOH A 37 537 68 HOH HOH . I 4 HOH A 38 538 69 HOH HOH . I 4 HOH A 39 539 70 HOH HOH . I 4 HOH A 40 540 73 HOH HOH . I 4 HOH A 41 541 74 HOH HOH . I 4 HOH A 42 542 76 HOH HOH . I 4 HOH A 43 543 77 HOH HOH . I 4 HOH A 44 544 78 HOH HOH . I 4 HOH A 45 545 79 HOH HOH . I 4 HOH A 46 546 82 HOH HOH . I 4 HOH A 47 547 83 HOH HOH . I 4 HOH A 48 548 85 HOH HOH . I 4 HOH A 49 549 86 HOH HOH . I 4 HOH A 50 550 87 HOH HOH . I 4 HOH A 51 551 90 HOH HOH . I 4 HOH A 52 552 94 HOH HOH . I 4 HOH A 53 553 95 HOH HOH . I 4 HOH A 54 554 98 HOH HOH . I 4 HOH A 55 555 99 HOH HOH . I 4 HOH A 56 556 101 HOH HOH . I 4 HOH A 57 557 104 HOH HOH . I 4 HOH A 58 558 105 HOH HOH . I 4 HOH A 59 559 109 HOH HOH . I 4 HOH A 60 560 111 HOH HOH . I 4 HOH A 61 561 112 HOH HOH . I 4 HOH A 62 562 114 HOH HOH . I 4 HOH A 63 563 115 HOH HOH . I 4 HOH A 64 564 116 HOH HOH . I 4 HOH A 65 565 119 HOH HOH . I 4 HOH A 66 566 120 HOH HOH . I 4 HOH A 67 567 123 HOH HOH . I 4 HOH A 68 568 126 HOH HOH . I 4 HOH A 69 569 127 HOH HOH . I 4 HOH A 70 570 128 HOH HOH . J 4 HOH B 1 501 7 HOH HOH . J 4 HOH B 2 502 8 HOH HOH . J 4 HOH B 3 503 13 HOH HOH . J 4 HOH B 4 504 16 HOH HOH . J 4 HOH B 5 505 18 HOH HOH . J 4 HOH B 6 506 21 HOH HOH . J 4 HOH B 7 507 24 HOH HOH . J 4 HOH B 8 508 25 HOH HOH . J 4 HOH B 9 509 26 HOH HOH . J 4 HOH B 10 510 27 HOH HOH . J 4 HOH B 11 511 29 HOH HOH . J 4 HOH B 12 512 32 HOH HOH . J 4 HOH B 13 513 33 HOH HOH . J 4 HOH B 14 514 35 HOH HOH . J 4 HOH B 15 515 37 HOH HOH . J 4 HOH B 16 516 39 HOH HOH . J 4 HOH B 17 517 40 HOH HOH . J 4 HOH B 18 518 45 HOH HOH . J 4 HOH B 19 519 50 HOH HOH . J 4 HOH B 20 520 52 HOH HOH . J 4 HOH B 21 521 55 HOH HOH . J 4 HOH B 22 522 57 HOH HOH . J 4 HOH B 23 523 58 HOH HOH . J 4 HOH B 24 524 62 HOH HOH . J 4 HOH B 25 525 64 HOH HOH . J 4 HOH B 26 526 66 HOH HOH . J 4 HOH B 27 527 67 HOH HOH . J 4 HOH B 28 528 71 HOH HOH . J 4 HOH B 29 529 72 HOH HOH . J 4 HOH B 30 530 75 HOH HOH . J 4 HOH B 31 531 80 HOH HOH . J 4 HOH B 32 532 81 HOH HOH . J 4 HOH B 33 533 84 HOH HOH . J 4 HOH B 34 534 88 HOH HOH . J 4 HOH B 35 535 89 HOH HOH . J 4 HOH B 36 536 91 HOH HOH . J 4 HOH B 37 537 92 HOH HOH . J 4 HOH B 38 538 93 HOH HOH . J 4 HOH B 39 539 96 HOH HOH . J 4 HOH B 40 540 97 HOH HOH . J 4 HOH B 41 541 100 HOH HOH . J 4 HOH B 42 542 102 HOH HOH . J 4 HOH B 43 543 103 HOH HOH . J 4 HOH B 44 544 106 HOH HOH . J 4 HOH B 45 545 107 HOH HOH . J 4 HOH B 46 546 108 HOH HOH . J 4 HOH B 47 547 110 HOH HOH . J 4 HOH B 48 548 113 HOH HOH . J 4 HOH B 49 549 117 HOH HOH . J 4 HOH B 50 550 118 HOH HOH . J 4 HOH B 51 551 121 HOH HOH . J 4 HOH B 52 552 122 HOH HOH . J 4 HOH B 53 553 124 HOH HOH . J 4 HOH B 54 554 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . F 2 96.96 96.955 96.963 0.33 45.56 ? S SO4 273 B 1 HETATM 2 O O1 SO4 . . . F 2 97.398 97.106 95.577 0.33 45.21 ? O1 SO4 273 B 1 HETATM 3 O O2 SO4 . . . F 2 95.572 97.388 97.104 0.33 45.2 ? O2 SO4 273 B 1 HETATM 4 O O3 SO4 . . . F 2 97.103 95.565 97.39 0.33 45.18 ? O3 SO4 273 B 1 HETATM 5 O O4 SO4 . . . F 2 97.795 97.788 97.807 0.33 45.49 ? O4 SO4 273 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #