data_3E0K
#
_model_server_result.job_id            8o75b1wXNMBmr9FJDN61Mg 
_model_server_result.datetime_utc      '2024-10-18 21:28:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3e0k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    3E0K 
#
_exptl.entry_id    3E0K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3E0K 
_cell.length_a            64.232 
_cell.length_b            64.232 
_cell.length_c            112.718 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3E0K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 112.718 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 70 A GLU 365 1_555 A N MSE 71 A MSE 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale2 A C MSE 71 A MSE 366 1_555 A N ALA 72 A ALA 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale3 A C TYR 92 A TYR 387 1_555 A N MSE 93 A MSE 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 A C MSE 93 A MSE 388 1_555 A N LYS 94 A LYS 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
_atom_sites.entry_id                     3E0K 
_atom_sites.fract_transf_matrix[1][1]    0.015569 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015569 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008872 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 501 501 SO4 SO4 . 
C 3 EDO A 1 502 502 EDO EDO . 
D 3 EDO A 1 503 503 EDO EDO . 
E 4 HOH A 1 1 1 HOH HOH . 
E 4 HOH A 2 2 2 HOH HOH . 
E 4 HOH A 3 3 3 HOH HOH . 
E 4 HOH A 4 4 4 HOH HOH . 
E 4 HOH A 5 5 5 HOH HOH . 
E 4 HOH A 6 6 6 HOH HOH . 
E 4 HOH A 7 7 7 HOH HOH . 
E 4 HOH A 8 8 8 HOH HOH . 
E 4 HOH A 9 9 9 HOH HOH . 
E 4 HOH A 10 10 10 HOH HOH . 
E 4 HOH A 11 11 11 HOH HOH . 
E 4 HOH A 12 12 12 HOH HOH . 
E 4 HOH A 13 13 13 HOH HOH . 
E 4 HOH A 14 14 14 HOH HOH . 
E 4 HOH A 15 15 15 HOH HOH . 
E 4 HOH A 16 16 16 HOH HOH . 
E 4 HOH A 17 17 17 HOH HOH . 
E 4 HOH A 18 18 18 HOH HOH . 
E 4 HOH A 19 19 19 HOH HOH . 
E 4 HOH A 20 20 20 HOH HOH . 
E 4 HOH A 21 21 21 HOH HOH . 
E 4 HOH A 22 22 22 HOH HOH . 
E 4 HOH A 23 23 23 HOH HOH . 
E 4 HOH A 24 24 24 HOH HOH . 
E 4 HOH A 25 25 25 HOH HOH . 
E 4 HOH A 26 26 26 HOH HOH . 
E 4 HOH A 27 27 27 HOH HOH . 
E 4 HOH A 28 28 28 HOH HOH . 
E 4 HOH A 29 29 29 HOH HOH . 
E 4 HOH A 30 30 30 HOH HOH . 
E 4 HOH A 31 31 31 HOH HOH . 
E 4 HOH A 32 32 32 HOH HOH . 
E 4 HOH A 33 33 33 HOH HOH . 
E 4 HOH A 34 34 34 HOH HOH . 
E 4 HOH A 35 35 35 HOH HOH . 
E 4 HOH A 36 36 36 HOH HOH . 
E 4 HOH A 37 37 37 HOH HOH . 
E 4 HOH A 38 38 38 HOH HOH . 
E 4 HOH A 39 39 39 HOH HOH . 
E 4 HOH A 40 40 40 HOH HOH . 
E 4 HOH A 41 41 41 HOH HOH . 
E 4 HOH A 42 42 42 HOH HOH . 
E 4 HOH A 43 43 43 HOH HOH . 
E 4 HOH A 44 44 44 HOH HOH . 
E 4 HOH A 45 45 45 HOH HOH . 
E 4 HOH A 46 46 46 HOH HOH . 
E 4 HOH A 47 47 47 HOH HOH . 
E 4 HOH A 48 48 48 HOH HOH . 
E 4 HOH A 49 49 49 HOH HOH . 
E 4 HOH A 50 50 50 HOH HOH . 
E 4 HOH A 51 51 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 20.024 31.641 35.902 1 81.99 ? C1 EDO 503 A 1 
HETATM 2 O O1 EDO . . . D 3 19.081 32.669 35.553 1 80.65 ? O1 EDO 503 A 1 
HETATM 3 C C2 EDO . . . D 3 19.299 30.295 35.953 1 81.49 ? C2 EDO 503 A 1 
HETATM 4 O O2 EDO . . . D 3 18.009 30.446 35.335 1 81.15 ? O2 EDO 503 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           362 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#