data_3E16
#
_model_server_result.job_id            XIMN6filShhguEtyx3i52w 
_model_server_result.datetime_utc      '2024-11-13 07:19:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3e16 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":273}' 
#
_entry.id    3E16 
#
_exptl.entry_id    3E16 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3E16 
_cell.length_a            53.253 
_cell.length_b            55.009 
_cell.length_c            82.799 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3E16 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 B CYS 42 1_555 A SG CYS 42 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 A SG CYS 124 B CYS 136 1_555 A SG CYS 200 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf3 A SG CYS 157 B CYS 168 1_555 A SG CYS 179 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
disulf ? disulf4 A SG CYS 190 B CYS 191 1_555 A SG CYS 218 B CYS 219 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.013 ? 
disulf ? disulf5 A SG CYS 190 B CYS 191 1_555 A SG CYS 218 B CYS 219 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.068 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 183 n n 
S C1 DMS sing 184 n n 
S C2 DMS sing 185 n n 
C1 H11 DMS sing 186 n n 
C1 H12 DMS sing 187 n n 
C1 H13 DMS sing 188 n n 
C2 H21 DMS sing 189 n n 
C2 H22 DMS sing 190 n n 
C2 H23 DMS sing 191 n n 
#
_atom_sites.entry_id                     3E16 
_atom_sites.fract_transf_matrix[1][1]    0.018778 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018179 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012077 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL B 1 2 2 GOL GOL . 
C 3 B4C B 1 1 1 B4C B4C . 
D 4 DMS B 1 273 1 DMS DMS . 
E 5 HOH B 1 274 1 HOH HOH . 
E 5 HOH B 2 275 2 HOH HOH . 
E 5 HOH B 3 276 3 HOH HOH . 
E 5 HOH B 4 277 4 HOH HOH . 
E 5 HOH B 5 278 5 HOH HOH . 
E 5 HOH B 6 279 6 HOH HOH . 
E 5 HOH B 7 280 7 HOH HOH . 
E 5 HOH B 8 281 8 HOH HOH . 
E 5 HOH B 9 282 9 HOH HOH . 
E 5 HOH B 10 283 10 HOH HOH . 
E 5 HOH B 11 284 11 HOH HOH . 
E 5 HOH B 12 285 12 HOH HOH . 
E 5 HOH B 13 286 13 HOH HOH . 
E 5 HOH B 14 287 14 HOH HOH . 
E 5 HOH B 15 288 15 HOH HOH . 
E 5 HOH B 16 289 16 HOH HOH . 
E 5 HOH B 17 290 17 HOH HOH . 
E 5 HOH B 18 291 18 HOH HOH . 
E 5 HOH B 19 292 19 HOH HOH . 
E 5 HOH B 20 293 20 HOH HOH . 
E 5 HOH B 21 294 21 HOH HOH . 
E 5 HOH B 22 295 22 HOH HOH . 
E 5 HOH B 23 296 23 HOH HOH . 
E 5 HOH B 24 297 24 HOH HOH . 
E 5 HOH B 25 298 25 HOH HOH . 
E 5 HOH B 26 299 26 HOH HOH . 
E 5 HOH B 27 300 27 HOH HOH . 
E 5 HOH B 28 301 28 HOH HOH . 
E 5 HOH B 29 302 29 HOH HOH . 
E 5 HOH B 30 303 30 HOH HOH . 
E 5 HOH B 31 304 31 HOH HOH . 
E 5 HOH B 32 305 32 HOH HOH . 
E 5 HOH B 33 306 33 HOH HOH . 
E 5 HOH B 34 307 34 HOH HOH . 
E 5 HOH B 35 308 35 HOH HOH . 
E 5 HOH B 36 309 36 HOH HOH . 
E 5 HOH B 37 310 37 HOH HOH . 
E 5 HOH B 38 311 38 HOH HOH . 
E 5 HOH B 39 312 39 HOH HOH . 
E 5 HOH B 40 313 40 HOH HOH . 
E 5 HOH B 41 314 41 HOH HOH . 
E 5 HOH B 42 315 42 HOH HOH . 
E 5 HOH B 43 316 43 HOH HOH . 
E 5 HOH B 44 317 44 HOH HOH . 
E 5 HOH B 45 318 45 HOH HOH . 
E 5 HOH B 46 319 46 HOH HOH . 
E 5 HOH B 47 320 47 HOH HOH . 
E 5 HOH B 48 321 48 HOH HOH . 
E 5 HOH B 49 322 49 HOH HOH . 
E 5 HOH B 50 323 50 HOH HOH . 
E 5 HOH B 51 324 51 HOH HOH . 
E 5 HOH B 52 325 52 HOH HOH . 
E 5 HOH B 53 326 53 HOH HOH . 
E 5 HOH B 54 327 54 HOH HOH . 
E 5 HOH B 55 328 55 HOH HOH . 
E 5 HOH B 56 329 56 HOH HOH . 
E 5 HOH B 57 330 57 HOH HOH . 
E 5 HOH B 58 331 58 HOH HOH . 
E 5 HOH B 59 332 59 HOH HOH . 
E 5 HOH B 60 333 60 HOH HOH . 
E 5 HOH B 61 334 61 HOH HOH . 
E 5 HOH B 62 335 62 HOH HOH . 
E 5 HOH B 63 336 63 HOH HOH . 
E 5 HOH B 64 337 64 HOH HOH . 
E 5 HOH B 65 338 65 HOH HOH . 
E 5 HOH B 66 339 66 HOH HOH . 
E 5 HOH B 67 340 67 HOH HOH . 
E 5 HOH B 68 341 68 HOH HOH . 
E 5 HOH B 69 342 69 HOH HOH . 
E 5 HOH B 70 343 70 HOH HOH . 
E 5 HOH B 71 344 71 HOH HOH . 
E 5 HOH B 72 345 72 HOH HOH . 
E 5 HOH B 73 346 73 HOH HOH . 
E 5 HOH B 74 347 74 HOH HOH . 
E 5 HOH B 75 348 76 HOH HOH . 
E 5 HOH B 76 349 77 HOH HOH . 
E 5 HOH B 77 350 78 HOH HOH . 
E 5 HOH B 78 351 79 HOH HOH . 
E 5 HOH B 79 352 80 HOH HOH . 
E 5 HOH B 80 353 81 HOH HOH . 
E 5 HOH B 81 354 82 HOH HOH . 
E 5 HOH B 82 355 83 HOH HOH . 
E 5 HOH B 83 356 84 HOH HOH . 
E 5 HOH B 84 357 85 HOH HOH . 
E 5 HOH B 85 358 86 HOH HOH . 
E 5 HOH B 86 359 87 HOH HOH . 
E 5 HOH B 87 360 88 HOH HOH . 
E 5 HOH B 88 361 89 HOH HOH . 
E 5 HOH B 89 362 90 HOH HOH . 
E 5 HOH B 90 363 91 HOH HOH . 
E 5 HOH B 91 364 92 HOH HOH . 
E 5 HOH B 92 365 93 HOH HOH . 
E 5 HOH B 93 366 94 HOH HOH . 
E 5 HOH B 94 367 95 HOH HOH . 
E 5 HOH B 95 368 96 HOH HOH . 
E 5 HOH B 96 369 97 HOH HOH . 
E 5 HOH B 97 370 98 HOH HOH . 
E 5 HOH B 98 371 99 HOH HOH . 
E 5 HOH B 99 372 100 HOH HOH . 
E 5 HOH B 100 373 101 HOH HOH . 
E 5 HOH B 101 374 102 HOH HOH . 
E 5 HOH B 102 375 103 HOH HOH . 
E 5 HOH B 103 376 104 HOH HOH . 
E 5 HOH B 104 377 105 HOH HOH . 
E 5 HOH B 105 378 107 HOH HOH . 
E 5 HOH B 106 379 108 HOH HOH . 
E 5 HOH B 107 380 109 HOH HOH . 
E 5 HOH B 108 381 110 HOH HOH . 
E 5 HOH B 109 382 111 HOH HOH . 
E 5 HOH B 110 383 112 HOH HOH . 
E 5 HOH B 111 384 113 HOH HOH . 
E 5 HOH B 112 385 114 HOH HOH . 
E 5 HOH B 113 386 115 HOH HOH . 
E 5 HOH B 114 387 116 HOH HOH . 
E 5 HOH B 115 388 117 HOH HOH . 
E 5 HOH B 116 389 118 HOH HOH . 
E 5 HOH B 117 390 119 HOH HOH . 
E 5 HOH B 118 391 121 HOH HOH . 
E 5 HOH B 119 392 122 HOH HOH . 
E 5 HOH B 120 393 123 HOH HOH . 
E 5 HOH B 121 394 124 HOH HOH . 
E 5 HOH B 122 395 125 HOH HOH . 
E 5 HOH B 123 396 126 HOH HOH . 
E 5 HOH B 124 397 127 HOH HOH . 
E 5 HOH B 125 398 128 HOH HOH . 
E 5 HOH B 126 399 129 HOH HOH . 
E 5 HOH B 127 400 130 HOH HOH . 
E 5 HOH B 128 401 131 HOH HOH . 
E 5 HOH B 129 402 132 HOH HOH . 
E 5 HOH B 130 403 133 HOH HOH . 
E 5 HOH B 131 404 134 HOH HOH . 
E 5 HOH B 132 405 135 HOH HOH . 
E 5 HOH B 133 406 136 HOH HOH . 
E 5 HOH B 134 407 137 HOH HOH . 
E 5 HOH B 135 408 138 HOH HOH . 
E 5 HOH B 136 409 139 HOH HOH . 
E 5 HOH B 137 410 140 HOH HOH . 
E 5 HOH B 138 411 141 HOH HOH . 
E 5 HOH B 139 412 142 HOH HOH . 
E 5 HOH B 140 413 144 HOH HOH . 
E 5 HOH B 141 414 145 HOH HOH . 
E 5 HOH B 142 415 146 HOH HOH . 
E 5 HOH B 143 416 147 HOH HOH . 
E 5 HOH B 144 417 148 HOH HOH . 
E 5 HOH B 145 418 149 HOH HOH . 
E 5 HOH B 146 419 150 HOH HOH . 
E 5 HOH B 147 420 151 HOH HOH . 
E 5 HOH B 148 421 152 HOH HOH . 
E 5 HOH B 149 422 153 HOH HOH . 
E 5 HOH B 150 423 155 HOH HOH . 
E 5 HOH B 151 424 156 HOH HOH . 
E 5 HOH B 152 425 157 HOH HOH . 
E 5 HOH B 153 426 158 HOH HOH . 
E 5 HOH B 154 427 159 HOH HOH . 
E 5 HOH B 155 428 160 HOH HOH . 
E 5 HOH B 156 429 161 HOH HOH . 
E 5 HOH B 157 430 162 HOH HOH . 
E 5 HOH B 158 431 163 HOH HOH . 
E 5 HOH B 159 432 164 HOH HOH . 
E 5 HOH B 160 433 165 HOH HOH . 
E 5 HOH B 161 434 166 HOH HOH . 
E 5 HOH B 162 435 167 HOH HOH . 
E 5 HOH B 163 436 168 HOH HOH . 
E 5 HOH B 164 437 169 HOH HOH . 
E 5 HOH B 165 438 170 HOH HOH . 
E 5 HOH B 166 439 171 HOH HOH . 
E 5 HOH B 167 440 172 HOH HOH . 
E 5 HOH B 168 441 173 HOH HOH . 
E 5 HOH B 169 442 174 HOH HOH . 
E 5 HOH B 170 443 175 HOH HOH . 
E 5 HOH B 171 444 176 HOH HOH . 
E 5 HOH B 172 445 177 HOH HOH . 
E 5 HOH B 173 446 178 HOH HOH . 
E 5 HOH B 174 447 179 HOH HOH . 
E 5 HOH B 175 448 180 HOH HOH . 
E 5 HOH B 176 449 181 HOH HOH . 
E 5 HOH B 177 450 185 HOH HOH . 
E 5 HOH B 178 451 186 HOH HOH . 
E 5 HOH B 179 452 187 HOH HOH . 
E 5 HOH B 180 453 188 HOH HOH . 
E 5 HOH B 181 454 189 HOH HOH . 
E 5 HOH B 182 455 190 HOH HOH . 
E 5 HOH B 183 456 191 HOH HOH . 
E 5 HOH B 184 457 192 HOH HOH . 
E 5 HOH B 185 458 193 HOH HOH . 
E 5 HOH B 186 459 194 HOH HOH . 
E 5 HOH B 187 460 195 HOH HOH . 
E 5 HOH B 188 461 196 HOH HOH . 
E 5 HOH B 189 462 197 HOH HOH . 
E 5 HOH B 190 463 198 HOH HOH . 
E 5 HOH B 191 464 199 HOH HOH . 
E 5 HOH B 192 465 200 HOH HOH . 
E 5 HOH B 193 466 201 HOH HOH . 
E 5 HOH B 194 467 202 HOH HOH . 
E 5 HOH B 195 468 203 HOH HOH . 
E 5 HOH B 196 469 204 HOH HOH . 
E 5 HOH B 197 470 205 HOH HOH . 
E 5 HOH B 198 471 206 HOH HOH . 
E 5 HOH B 199 472 207 HOH HOH . 
E 5 HOH B 200 473 208 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . D 4 1.82 15.402 0.547 1 20.37 ? S DMS 273 B 1 
HETATM 2 O O DMS . . . D 4 1.058 14.29 1.719 1 27.35 ? O DMS 273 B 1 
HETATM 3 C C1 DMS . . . D 4 1.105 17.06 0.656 1 25.4 ? C1 DMS 273 B 1 
HETATM 4 C C2 DMS . . . D 4 3.431 15.844 1.264 1 17.24 ? C2 DMS 273 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           4 
#