data_3E1Y # _model_server_result.job_id VzJWZKTKpa2Yaxt5YTntTQ _model_server_result.datetime_utc '2025-08-01 09:39:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1526}' # _entry.id 3E1Y # _exptl.entry_id 3E1Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3E1Y _cell.length_a 173.966 _cell.length_b 173.966 _cell.length_c 119.824 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 ? dimeric 2 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,F,I 1 1 B,E,J 2 1 C,G 3 1 D,H 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 86 E CYS 519 1_555 E SG CYS 92 E CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 F SG CYS 86 F CYS 519 1_555 F SG CYS 92 F CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 G SG CYS 86 G CYS 519 1_555 G SG CYS 92 G CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 H SG CYS 86 H CYS 519 1_555 H SG CYS 92 H CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3E1Y _atom_sites.fract_transf_matrix[1][1] 0.005748 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ATP A 1 1526 1526 ATP ATP . J 3 ATP B 1 1526 1526 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . I 3 -37.652 96.016 15.863 1 180.69 ? PG ATP 1526 A 1 HETATM 2 O O1G ATP . . . I 3 -37.457 94.623 15.306 1 180.73 ? O1G ATP 1526 A 1 HETATM 3 O O2G ATP . . . I 3 -36.498 96.954 15.585 1 180.66 ? O2G ATP 1526 A 1 HETATM 4 O O3G ATP . . . I 3 -39.019 96.614 15.61 1 180.52 ? O3G ATP 1526 A 1 HETATM 5 P PB ATP . . . I 3 -36.283 95.258 18.208 1 179.93 ? PB ATP 1526 A 1 HETATM 6 O O1B ATP . . . I 3 -35.648 94.154 17.388 1 179.87 ? O1B ATP 1526 A 1 HETATM 7 O O2B ATP . . . I 3 -36.675 95.006 19.642 1 180.29 ? O2B ATP 1526 A 1 HETATM 8 O O3B ATP . . . I 3 -37.607 95.796 17.457 1 180.37 ? O3B ATP 1526 A 1 HETATM 9 P PA ATP . . . I 3 -35.462 97.667 19.383 1 177.15 ? PA ATP 1526 A 1 HETATM 10 O O1A ATP . . . I 3 -36.891 97.741 19.868 1 177.18 ? O1A ATP 1526 A 1 HETATM 11 O O2A ATP . . . I 3 -34.341 97.468 20.372 1 177.18 ? O2A ATP 1526 A 1 HETATM 12 O O3A ATP . . . I 3 -35.333 96.561 18.214 1 178.52 ? O3A ATP 1526 A 1 HETATM 13 O O5' ATP . . . I 3 -35.139 99.008 18.575 1 176.52 ? O5' ATP 1526 A 1 HETATM 14 C C5' ATP . . . I 3 -35.91 99.371 17.439 1 175.24 ? C5' ATP 1526 A 1 HETATM 15 C C4' ATP . . . I 3 -37.011 100.328 17.864 1 174.1 ? C4' ATP 1526 A 1 HETATM 16 O O4' ATP . . . I 3 -36.526 101.216 18.875 1 173.54 ? O4' ATP 1526 A 1 HETATM 17 C C3' ATP . . . I 3 -37.431 101.156 16.666 1 173.7 ? C3' ATP 1526 A 1 HETATM 18 O O3' ATP . . . I 3 -38.83 100.986 16.429 1 173.5 ? O3' ATP 1526 A 1 HETATM 19 C C2' ATP . . . I 3 -37.123 102.595 17.016 1 173.48 ? C2' ATP 1526 A 1 HETATM 20 O O2' ATP . . . I 3 -38.328 103.365 16.938 1 173.51 ? O2' ATP 1526 A 1 HETATM 21 C C1' ATP . . . I 3 -36.601 102.58 18.452 1 173.23 ? C1' ATP 1526 A 1 HETATM 22 N N9 ATP . . . I 3 -35.301 103.315 18.622 1 172.83 ? N9 ATP 1526 A 1 HETATM 23 C C8 ATP . . . I 3 -35.19 104.66 18.592 1 172.9 ? C8 ATP 1526 A 1 HETATM 24 N N7 ATP . . . I 3 -33.917 105.086 18.783 1 172.62 ? N7 ATP 1526 A 1 HETATM 25 C C5 ATP . . . I 3 -33.162 103.991 18.953 1 172.18 ? C5 ATP 1526 A 1 HETATM 26 C C6 ATP . . . I 3 -31.723 103.744 19.201 1 171.68 ? C6 ATP 1526 A 1 HETATM 27 N N6 ATP . . . I 3 -30.853 104.779 19.304 1 171.09 ? N6 ATP 1526 A 1 HETATM 28 N N1 ATP . . . I 3 -31.321 102.461 19.323 1 171.56 ? N1 ATP 1526 A 1 HETATM 29 C C2 ATP . . . I 3 -32.196 101.442 19.216 1 171.69 ? C2 ATP 1526 A 1 HETATM 30 N N3 ATP . . . I 3 -33.516 101.601 18.994 1 171.98 ? N3 ATP 1526 A 1 HETATM 31 C C4 ATP . . . I 3 -34.068 102.828 18.852 1 172.38 ? C4 ATP 1526 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 698 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 31 #