data_3E22
#
_model_server_result.job_id            UqeHwU8PH1b4POE8ksaosQ 
_model_server_result.datetime_utc      '2024-11-28 13:21:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3e22 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":600}' 
#
_entry.id    3E22 
#
_exptl.entry_id    3E22 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3E22 
_cell.length_a            324.093 
_cell.length_b            324.093 
_cell.length_c            53.28 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3E22 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 K N N 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 174 n n 
PG O2G GTP sing 175 n n 
PG O3G GTP sing 176 n n 
PG O3B GTP sing 177 n n 
O2G HOG2 GTP sing 178 n n 
O3G HOG3 GTP sing 179 n n 
O3B PB GTP sing 180 n n 
PB O1B GTP doub 181 n n 
PB O2B GTP sing 182 n n 
PB O3A GTP sing 183 n n 
O2B HOB2 GTP sing 184 n n 
O3A PA GTP sing 185 n n 
PA O1A GTP doub 186 n n 
PA O2A GTP sing 187 n n 
PA O5' GTP sing 188 n n 
O2A HOA2 GTP sing 189 n n 
O5' C5' GTP sing 190 n n 
C5' C4' GTP sing 191 n n 
C5' H5' GTP sing 192 n n 
C5' "H5''" GTP sing 193 n n 
C4' O4' GTP sing 194 n n 
C4' C3' GTP sing 195 n n 
C4' H4' GTP sing 196 n n 
O4' C1' GTP sing 197 n n 
C3' O3' GTP sing 198 n n 
C3' C2' GTP sing 199 n n 
C3' H3' GTP sing 200 n n 
O3' HO3' GTP sing 201 n n 
C2' O2' GTP sing 202 n n 
C2' C1' GTP sing 203 n n 
C2' H2' GTP sing 204 n n 
O2' HO2' GTP sing 205 n n 
C1' N9 GTP sing 206 n n 
C1' H1' GTP sing 207 n n 
N9 C8 GTP sing 208 n y 
N9 C4 GTP sing 209 n y 
C8 N7 GTP doub 210 n y 
C8 H8 GTP sing 211 n n 
N7 C5 GTP sing 212 n y 
C5 C6 GTP sing 213 n n 
C5 C4 GTP doub 214 n y 
C6 O6 GTP doub 215 n n 
C6 N1 GTP sing 216 n n 
N1 C2 GTP sing 217 n n 
N1 HN1 GTP sing 218 n n 
C2 N2 GTP sing 219 n n 
C2 N3 GTP doub 220 n n 
N2 HN21 GTP sing 221 n n 
N2 HN22 GTP sing 222 n n 
N3 C4 GTP sing 223 n n 
#
_atom_sites.entry_id                     3E22 
_atom_sites.fract_transf_matrix[1][1]    0.003086 
_atom_sites.fract_transf_matrix[1][2]    0.001781 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003563 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018769 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 GTP A 1 600 600 GTP GTP . 
G 5 MG A 1 601 601 MG MG . 
H 6 GDP B 1 600 600 GDP GDP . 
I 7 LOC B 1 700 700 LOC COL . 
J 8 TZT B 1 800 800 TZT TZT . 
K 4 GTP C 1 600 600 GTP GTP . 
L 5 MG C 1 601 601 MG MG . 
M 6 GDP D 1 600 600 GDP GDP . 
N 7 LOC D 1 700 700 LOC COL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . K 4 253.401 14.925 35.282 1 95.76 ? PG GTP 600 C 1 
HETATM 2 O O1G GTP . . . K 4 254.442 15.912 34.904 1 95.16 ? O1G GTP 600 C 1 
HETATM 3 O O2G GTP . . . K 4 253.521 14.575 36.772 1 95.5 ? O2G GTP 600 C 1 
HETATM 4 O O3G GTP . . . K 4 253.614 13.603 34.519 1 95.76 ? O3G GTP 600 C 1 
HETATM 5 O O3B GTP . . . K 4 251.958 15.565 34.938 1 95.33 ? O3B GTP 600 C 1 
HETATM 6 P PB GTP . . . K 4 250.634 14.655 34.874 1 95.16 ? PB GTP 600 C 1 
HETATM 7 O O1B GTP . . . K 4 249.449 15.442 35.207 1 95.22 ? O1B GTP 600 C 1 
HETATM 8 O O2B GTP . . . K 4 250.729 13.474 35.843 1 95.01 ? O2B GTP 600 C 1 
HETATM 9 O O3A GTP . . . K 4 250.52 14.209 33.335 1 95.26 ? O3A GTP 600 C 1 
HETATM 10 P PA GTP . . . K 4 250.182 15.329 32.243 1 94.37 ? PA GTP 600 C 1 
HETATM 11 O O1A GTP . . . K 4 251.371 15.662 31.45 1 94.8 ? O1A GTP 600 C 1 
HETATM 12 O O2A GTP . . . K 4 249.709 16.589 32.944 1 95.22 ? O2A GTP 600 C 1 
HETATM 13 O O5' GTP . . . K 4 249.01 14.719 31.352 1 94.73 ? O5' GTP 600 C 1 
HETATM 14 C C5' GTP . . . K 4 249.3 14.232 30.063 1 95.47 ? C5' GTP 600 C 1 
HETATM 15 C C4' GTP . . . K 4 248.131 14.5 29.109 1 95.67 ? C4' GTP 600 C 1 
HETATM 16 O O4' GTP . . . K 4 247.856 15.868 29.112 1 95.47 ? O4' GTP 600 C 1 
HETATM 17 C C3' GTP . . . K 4 248.397 14.182 27.643 1 95.77 ? C3' GTP 600 C 1 
HETATM 18 O O3' GTP . . . K 4 247.147 13.995 27.029 1 95.48 ? O3' GTP 600 C 1 
HETATM 19 C C2' GTP . . . K 4 248.968 15.449 27.058 1 95.42 ? C2' GTP 600 C 1 
HETATM 20 O O2' GTP . . . K 4 248.576 15.613 25.717 1 95.04 ? O2' GTP 600 C 1 
HETATM 21 C C1' GTP . . . K 4 248.303 16.486 27.923 1 95.36 ? C1' GTP 600 C 1 
HETATM 22 N N9 GTP . . . K 4 249.224 17.569 28.262 1 95.28 ? N9 GTP 600 C 1 
HETATM 23 C C8 GTP . . . K 4 250.324 17.538 29.08 1 95.24 ? C8 GTP 600 C 1 
HETATM 24 N N7 GTP . . . K 4 250.838 18.795 29.104 1 95.53 ? N7 GTP 600 C 1 
HETATM 25 C C5 GTP . . . K 4 250.077 19.618 28.331 1 95.6 ? C5 GTP 600 C 1 
HETATM 26 C C6 GTP . . . K 4 250.139 20.976 28.002 1 95.49 ? C6 GTP 600 C 1 
HETATM 27 O O6 GTP . . . K 4 251.041 21.685 28.448 1 95.46 ? O6 GTP 600 C 1 
HETATM 28 N N1 GTP . . . K 4 249.183 21.513 27.152 1 95.22 ? N1 GTP 600 C 1 
HETATM 29 C C2 GTP . . . K 4 248.17 20.723 26.642 1 95.01 ? C2 GTP 600 C 1 
HETATM 30 N N2 GTP . . . K 4 247.252 21.219 25.835 1 94.94 ? N2 GTP 600 C 1 
HETATM 31 N N3 GTP . . . K 4 248.111 19.396 26.975 1 95.21 ? N3 GTP 600 C 1 
HETATM 32 C C4 GTP . . . K 4 249.051 18.848 27.797 1 95.47 ? C4 GTP 600 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    56 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           32 
#