data_3E25
#
_model_server_result.job_id            F5Eu3T-1MoyhYHg60bUQFw 
_model_server_result.datetime_utc      '2025-01-05 05:54:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3e25 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":340}' 
#
_entry.id    3E25 
#
_exptl.entry_id    3E25 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              186.057 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-PHOSPHOGLYCERIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3E25 
_cell.length_a            100.309 
_cell.length_b            100.309 
_cell.length_c            127.035 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3E25 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        80 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 136 A ASP 136 1_555 B MG MG . A MG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc2 B MG MG . A MG 338 1_555 C O1A UDP . A UDP 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc3 B MG MG . A MG 338 1_555 C O1B UDP . A UDP 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
#
_chem_comp.formula           'C3 H7 O7 P' 
_chem_comp.formula_weight    186.057 
_chem_comp.id                3PG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-PHOSPHOGLYCERIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 3PG doub 1 n n 
C1 O2 3PG sing 2 n n 
C1 C2 3PG sing 3 n n 
O2 HO2 3PG sing 4 n n 
C2 O3 3PG sing 5 n n 
C2 C3 3PG sing 6 n n 
C2 H2 3PG sing 7 n n 
O3 HO3 3PG sing 8 n n 
C3 O1P 3PG sing 9 n n 
C3 H31 3PG sing 10 n n 
C3 H32 3PG sing 11 n n 
O1P P 3PG sing 12 n n 
P O2P 3PG doub 13 n n 
P O3P 3PG sing 14 n n 
P O4P 3PG sing 15 n n 
O3P HOP3 3PG sing 16 n n 
O4P HOP4 3PG sing 17 n n 
#
_atom_sites.entry_id                     3E25 
_atom_sites.fract_transf_matrix[1][1]    0.009969 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009969 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007872 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 338 1 MG MG . 
C 3 UDP A 1 339 1 UDP UDP . 
D 4 3PG A 1 340 1 3PG MP3 . 
E 5 HOH A 1 341 1 HOH HOH . 
E 5 HOH A 2 342 2 HOH HOH . 
E 5 HOH A 3 343 3 HOH HOH . 
E 5 HOH A 4 344 4 HOH HOH . 
E 5 HOH A 5 345 5 HOH HOH . 
E 5 HOH A 6 346 6 HOH HOH . 
E 5 HOH A 7 347 7 HOH HOH . 
E 5 HOH A 8 348 8 HOH HOH . 
E 5 HOH A 9 349 9 HOH HOH . 
E 5 HOH A 10 350 10 HOH HOH . 
E 5 HOH A 11 351 11 HOH HOH . 
E 5 HOH A 12 352 12 HOH HOH . 
E 5 HOH A 13 353 13 HOH HOH . 
E 5 HOH A 14 354 14 HOH HOH . 
E 5 HOH A 15 355 15 HOH HOH . 
E 5 HOH A 16 356 16 HOH HOH . 
E 5 HOH A 17 357 17 HOH HOH . 
E 5 HOH A 18 358 18 HOH HOH . 
E 5 HOH A 19 359 19 HOH HOH . 
E 5 HOH A 20 360 20 HOH HOH . 
E 5 HOH A 21 361 21 HOH HOH . 
E 5 HOH A 22 362 22 HOH HOH . 
E 5 HOH A 23 363 23 HOH HOH . 
E 5 HOH A 24 364 24 HOH HOH . 
E 5 HOH A 25 365 25 HOH HOH . 
E 5 HOH A 26 366 26 HOH HOH . 
E 5 HOH A 27 367 27 HOH HOH . 
E 5 HOH A 28 368 28 HOH HOH . 
E 5 HOH A 29 369 29 HOH HOH . 
E 5 HOH A 30 370 30 HOH HOH . 
E 5 HOH A 31 371 31 HOH HOH . 
E 5 HOH A 32 372 32 HOH HOH . 
E 5 HOH A 33 373 33 HOH HOH . 
E 5 HOH A 34 374 34 HOH HOH . 
E 5 HOH A 35 375 35 HOH HOH . 
E 5 HOH A 36 376 36 HOH HOH . 
E 5 HOH A 37 377 37 HOH HOH . 
E 5 HOH A 38 378 38 HOH HOH . 
E 5 HOH A 39 379 39 HOH HOH . 
E 5 HOH A 40 380 40 HOH HOH . 
E 5 HOH A 41 381 41 HOH HOH . 
E 5 HOH A 42 382 42 HOH HOH . 
E 5 HOH A 43 383 43 HOH HOH . 
E 5 HOH A 44 384 44 HOH HOH . 
E 5 HOH A 45 385 46 HOH HOH . 
E 5 HOH A 46 386 47 HOH HOH . 
E 5 HOH A 47 387 48 HOH HOH . 
E 5 HOH A 48 388 49 HOH HOH . 
E 5 HOH A 49 389 50 HOH HOH . 
E 5 HOH A 50 390 51 HOH HOH . 
E 5 HOH A 51 391 52 HOH HOH . 
E 5 HOH A 52 392 53 HOH HOH . 
E 5 HOH A 53 393 55 HOH HOH . 
E 5 HOH A 54 394 56 HOH HOH . 
E 5 HOH A 55 395 57 HOH HOH . 
E 5 HOH A 56 396 58 HOH HOH . 
E 5 HOH A 57 397 59 HOH HOH . 
E 5 HOH A 58 398 60 HOH HOH . 
E 5 HOH A 59 399 61 HOH HOH . 
E 5 HOH A 60 400 63 HOH HOH . 
E 5 HOH A 61 401 64 HOH HOH . 
E 5 HOH A 62 402 65 HOH HOH . 
E 5 HOH A 63 403 67 HOH HOH . 
E 5 HOH A 64 404 68 HOH HOH . 
E 5 HOH A 65 405 69 HOH HOH . 
E 5 HOH A 66 406 70 HOH HOH . 
E 5 HOH A 67 407 71 HOH HOH . 
E 5 HOH A 68 408 72 HOH HOH . 
E 5 HOH A 69 409 73 HOH HOH . 
E 5 HOH A 70 410 74 HOH HOH . 
E 5 HOH A 71 411 75 HOH HOH . 
E 5 HOH A 72 412 76 HOH HOH . 
E 5 HOH A 73 413 77 HOH HOH . 
E 5 HOH A 74 414 78 HOH HOH . 
E 5 HOH A 75 415 79 HOH HOH . 
E 5 HOH A 76 416 80 HOH HOH . 
E 5 HOH A 77 417 82 HOH HOH . 
E 5 HOH A 78 418 83 HOH HOH . 
E 5 HOH A 79 419 84 HOH HOH . 
E 5 HOH A 80 420 85 HOH HOH . 
E 5 HOH A 81 421 86 HOH HOH . 
E 5 HOH A 82 422 87 HOH HOH . 
E 5 HOH A 83 423 88 HOH HOH . 
E 5 HOH A 84 424 89 HOH HOH . 
E 5 HOH A 85 425 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 3PG . . . D 4 8.651 -2.504 3.176 0.99 57.03 ? C1 3PG 340 A 1 
HETATM 2 O O1 3PG . . . D 4 9.666 -2.775 3.755 0.99 49.71 ? O1 3PG 340 A 1 
HETATM 3 O O2 3PG . . . D 4 7.775 -1.632 3.853 0.99 49.83 ? O2 3PG 340 A 1 
HETATM 4 C C2 3PG . . . D 4 8.526 -2.675 1.629 0.99 60.67 ? C2 3PG 340 A 1 
HETATM 5 O O3 3PG . . . D 4 9.162 -1.698 0.847 0.99 53.27 ? O3 3PG 340 A 1 
HETATM 6 C C3 3PG . . . D 4 7.125 -2.869 1.055 0.99 61.42 ? C3 3PG 340 A 1 
HETATM 7 O O1P 3PG . . . D 4 6.705 -1.922 0.096 0.99 65.66 ? O1P 3PG 340 A 1 
HETATM 8 P P 3PG . . . D 4 5.098 -1.661 -0.376 0.99 93.86 ? P 3PG 340 A 1 
HETATM 9 O O2P 3PG . . . D 4 5.022 -0.337 -1.378 0.99 72.57 ? O2P 3PG 340 A 1 
HETATM 10 O O3P 3PG . . . D 4 4.287 -1.317 0.796 0.99 68.48 ? O3P 3PG 340 A 1 
HETATM 11 O O4P 3PG . . . D 4 4.367 -2.941 -1.178 0.99 58.09 ? O4P 3PG 340 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           11 
#