data_3E28 # _model_server_result.job_id qX-ZEMADEiFkIqHnZrGkIg _model_server_result.datetime_utc '2024-12-22 11:51:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e28 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":230}' # _entry.id 3E28 # _exptl.entry_id 3E28 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.78 _cell.angle_gamma 90 _cell.entry_id 3E28 _cell.length_a 230.193 _cell.length_b 144.943 _cell.length_c 52.714 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E28 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS tetrameric 4 author_and_software_defined_assembly 1 PQS tetrameric 4 author_and_software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 PISA dimeric 2 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,K,L,M,N,CA,DA 1 1,2 C,D,E,F,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,EA,FA,GA,HA 2 1 A,B,G,H,I,J,K,L,M,N,CA,DA 3 1 C,D,O,P,Q,R,S,T,U,EA,FA 4 1 E,F,V,W,X,Y,Z,AA,BA,GA,HA 5 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -3.475202 0 52.599323 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 L N N ? 2 O N N ? 2 S N N ? 2 V N N ? 2 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 42 A CYS 42 1_555 G ZN ZN . A ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc2 A OD1 ASP 44 A ASP 44 1_555 G ZN ZN . A ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc3 A NE2 HIS 98 A HIS 98 1_555 G ZN ZN . A ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc4 A SG CYS 101 A CYS 101 1_555 G ZN ZN . A ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc5 B SG CYS 42 B CYS 42 1_555 L ZN ZN . B ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc6 B OD2 ASP 44 B ASP 44 1_555 L ZN ZN . B ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc7 B NE2 HIS 98 B HIS 98 1_555 L ZN ZN . B ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc8 B SG CYS 101 B CYS 101 1_555 L ZN ZN . B ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc9 C SG CYS 42 C CYS 42 1_555 O ZN ZN . C ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc10 C OD2 ASP 44 C ASP 44 1_555 O ZN ZN . C ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc11 C NE2 HIS 98 C HIS 98 1_555 O ZN ZN . C ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc12 C SG CYS 101 C CYS 101 1_555 O ZN ZN . C ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc13 D SG CYS 42 D CYS 42 1_555 S ZN ZN . D ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc14 D OD2 ASP 44 D ASP 44 1_555 S ZN ZN . D ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc15 D NE2 HIS 98 D HIS 98 1_555 S ZN ZN . D ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc16 D SG CYS 101 D CYS 101 1_555 S ZN ZN . D ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc17 E SG CYS 42 E CYS 42 1_555 V ZN ZN . E ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc18 E OD2 ASP 44 E ASP 44 1_555 V ZN ZN . E ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc19 E NE2 HIS 98 E HIS 98 1_555 V ZN ZN . E ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc20 E SG CYS 101 E CYS 101 1_555 V ZN ZN . E ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc21 F SG CYS 42 F CYS 42 1_555 Z ZN ZN . F ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc22 F OD2 ASP 44 F ASP 44 1_555 Z ZN ZN . F ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc23 F NE2 HIS 98 F HIS 98 1_555 Z ZN ZN . F ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc24 F SG CYS 101 F CYS 101 1_555 Z ZN ZN . F ZN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3E28 _atom_sites.fract_transf_matrix[1][1] 0.004344 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000287 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ZN A 1 230 230 ZN ZN . H 3 SO4 A 1 231 1 SO4 SO4 . I 3 SO4 A 1 232 2 SO4 SO4 . J 3 SO4 A 1 233 7 SO4 SO4 . K 3 SO4 A 1 234 11 SO4 SO4 . L 2 ZN B 1 230 230 ZN ZN . M 3 SO4 B 1 231 10 SO4 SO4 . N 3 SO4 B 1 232 12 SO4 SO4 . O 2 ZN C 1 230 230 ZN ZN . P 3 SO4 C 1 231 3 SO4 SO4 . Q 3 SO4 C 1 232 8 SO4 SO4 . R 3 SO4 C 1 233 13 SO4 SO4 . S 2 ZN D 1 230 230 ZN ZN . T 3 SO4 D 1 231 4 SO4 SO4 . U 3 SO4 D 1 232 14 SO4 SO4 . V 2 ZN E 1 230 230 ZN ZN . W 3 SO4 E 1 231 5 SO4 SO4 . X 3 SO4 E 1 232 6 SO4 SO4 . Y 3 SO4 E 1 233 15 SO4 SO4 . Z 2 ZN F 1 230 230 ZN ZN . AA 3 SO4 F 1 231 9 SO4 SO4 . BA 3 SO4 F 1 232 16 SO4 SO4 . CA 4 HOH A 1 235 1 HOH HOH . CA 4 HOH A 2 236 3 HOH HOH . CA 4 HOH A 3 237 5 HOH HOH . CA 4 HOH A 4 238 9 HOH HOH . CA 4 HOH A 5 239 10 HOH HOH . CA 4 HOH A 6 240 11 HOH HOH . CA 4 HOH A 7 241 15 HOH HOH . CA 4 HOH A 8 242 19 HOH HOH . CA 4 HOH A 9 243 25 HOH HOH . CA 4 HOH A 10 244 34 HOH HOH . CA 4 HOH A 11 245 39 HOH HOH . CA 4 HOH A 12 247 52 HOH HOH . CA 4 HOH A 13 248 59 HOH HOH . CA 4 HOH A 14 249 67 HOH HOH . CA 4 HOH A 15 250 75 HOH HOH . CA 4 HOH A 16 251 82 HOH HOH . CA 4 HOH A 17 252 83 HOH HOH . CA 4 HOH A 18 253 87 HOH HOH . CA 4 HOH A 19 254 96 HOH HOH . CA 4 HOH A 20 255 100 HOH HOH . CA 4 HOH A 21 256 101 HOH HOH . CA 4 HOH A 22 257 102 HOH HOH . CA 4 HOH A 23 258 103 HOH HOH . CA 4 HOH A 24 259 106 HOH HOH . CA 4 HOH A 25 260 107 HOH HOH . CA 4 HOH A 26 261 115 HOH HOH . CA 4 HOH A 27 262 144 HOH HOH . CA 4 HOH A 28 263 145 HOH HOH . CA 4 HOH A 29 264 152 HOH HOH . CA 4 HOH A 30 265 154 HOH HOH . CA 4 HOH A 31 266 163 HOH HOH . CA 4 HOH A 32 267 167 HOH HOH . CA 4 HOH A 33 268 168 HOH HOH . DA 4 HOH B 1 233 7 HOH HOH . DA 4 HOH B 2 234 12 HOH HOH . DA 4 HOH B 3 235 17 HOH HOH . DA 4 HOH B 4 236 18 HOH HOH . DA 4 HOH B 5 237 35 HOH HOH . DA 4 HOH B 6 238 36 HOH HOH . DA 4 HOH B 7 239 56 HOH HOH . DA 4 HOH B 8 240 81 HOH HOH . DA 4 HOH B 9 241 94 HOH HOH . DA 4 HOH B 10 242 114 HOH HOH . DA 4 HOH B 11 243 119 HOH HOH . DA 4 HOH B 12 244 126 HOH HOH . DA 4 HOH B 13 245 129 HOH HOH . DA 4 HOH B 14 246 131 HOH HOH . DA 4 HOH B 15 247 132 HOH HOH . DA 4 HOH B 16 248 134 HOH HOH . DA 4 HOH B 17 249 139 HOH HOH . DA 4 HOH B 18 250 148 HOH HOH . DA 4 HOH B 19 251 153 HOH HOH . DA 4 HOH B 20 252 157 HOH HOH . DA 4 HOH B 21 253 170 HOH HOH . EA 4 HOH C 1 234 14 HOH HOH . EA 4 HOH C 2 235 21 HOH HOH . EA 4 HOH C 3 236 24 HOH HOH . EA 4 HOH C 4 237 26 HOH HOH . EA 4 HOH C 5 238 28 HOH HOH . EA 4 HOH C 6 239 40 HOH HOH . EA 4 HOH C 7 240 42 HOH HOH . EA 4 HOH C 8 241 49 HOH HOH . EA 4 HOH C 9 242 55 HOH HOH . EA 4 HOH C 10 243 68 HOH HOH . EA 4 HOH C 11 244 71 HOH HOH . EA 4 HOH C 12 245 74 HOH HOH . EA 4 HOH C 13 246 99 HOH HOH . EA 4 HOH C 14 247 108 HOH HOH . EA 4 HOH C 15 248 110 HOH HOH . EA 4 HOH C 16 249 113 HOH HOH . EA 4 HOH C 17 250 117 HOH HOH . EA 4 HOH C 18 251 124 HOH HOH . EA 4 HOH C 19 252 130 HOH HOH . EA 4 HOH C 20 253 138 HOH HOH . EA 4 HOH C 21 254 147 HOH HOH . EA 4 HOH C 22 255 151 HOH HOH . EA 4 HOH C 23 256 159 HOH HOH . EA 4 HOH C 24 257 162 HOH HOH . EA 4 HOH C 25 258 165 HOH HOH . FA 4 HOH D 1 233 6 HOH HOH . FA 4 HOH D 2 234 8 HOH HOH . FA 4 HOH D 3 235 13 HOH HOH . FA 4 HOH D 4 236 20 HOH HOH . FA 4 HOH D 5 237 22 HOH HOH . FA 4 HOH D 6 238 30 HOH HOH . FA 4 HOH D 7 239 33 HOH HOH . FA 4 HOH D 8 240 37 HOH HOH . FA 4 HOH D 9 241 41 HOH HOH . FA 4 HOH D 10 242 43 HOH HOH . FA 4 HOH D 11 243 46 HOH HOH . FA 4 HOH D 12 244 50 HOH HOH . FA 4 HOH D 13 245 51 HOH HOH . FA 4 HOH D 14 246 53 HOH HOH . FA 4 HOH D 15 247 62 HOH HOH . FA 4 HOH D 16 248 65 HOH HOH . FA 4 HOH D 17 249 72 HOH HOH . FA 4 HOH D 18 250 77 HOH HOH . FA 4 HOH D 19 251 78 HOH HOH . FA 4 HOH D 20 252 79 HOH HOH . FA 4 HOH D 21 253 84 HOH HOH . FA 4 HOH D 22 254 85 HOH HOH . FA 4 HOH D 23 255 90 HOH HOH . FA 4 HOH D 24 256 91 HOH HOH . FA 4 HOH D 25 257 95 HOH HOH . FA 4 HOH D 26 258 98 HOH HOH . FA 4 HOH D 27 259 105 HOH HOH . FA 4 HOH D 28 260 111 HOH HOH . FA 4 HOH D 29 261 116 HOH HOH . FA 4 HOH D 30 262 118 HOH HOH . FA 4 HOH D 31 263 135 HOH HOH . FA 4 HOH D 32 264 140 HOH HOH . FA 4 HOH D 33 265 141 HOH HOH . FA 4 HOH D 34 266 142 HOH HOH . FA 4 HOH D 35 267 143 HOH HOH . FA 4 HOH D 36 268 146 HOH HOH . FA 4 HOH D 37 269 150 HOH HOH . FA 4 HOH D 38 270 155 HOH HOH . FA 4 HOH D 39 271 156 HOH HOH . FA 4 HOH D 40 272 161 HOH HOH . FA 4 HOH D 41 273 164 HOH HOH . FA 4 HOH D 42 274 166 HOH HOH . FA 4 HOH D 43 275 169 HOH HOH . FA 4 HOH D 44 276 171 HOH HOH . FA 4 HOH D 45 277 172 HOH HOH . GA 4 HOH E 1 234 4 HOH HOH . GA 4 HOH E 2 235 16 HOH HOH . GA 4 HOH E 3 236 29 HOH HOH . GA 4 HOH E 4 237 38 HOH HOH . GA 4 HOH E 5 238 48 HOH HOH . GA 4 HOH E 6 239 54 HOH HOH . GA 4 HOH E 7 240 57 HOH HOH . GA 4 HOH E 8 241 63 HOH HOH . GA 4 HOH E 9 242 69 HOH HOH . GA 4 HOH E 10 243 70 HOH HOH . GA 4 HOH E 11 244 73 HOH HOH . GA 4 HOH E 12 245 89 HOH HOH . GA 4 HOH E 13 246 92 HOH HOH . GA 4 HOH E 14 247 93 HOH HOH . GA 4 HOH E 15 248 120 HOH HOH . GA 4 HOH E 16 249 122 HOH HOH . GA 4 HOH E 17 250 123 HOH HOH . GA 4 HOH E 18 251 125 HOH HOH . GA 4 HOH E 19 252 136 HOH HOH . GA 4 HOH E 20 253 149 HOH HOH . GA 4 HOH E 21 254 158 HOH HOH . HA 4 HOH F 1 246 44 HOH HOH . HA 4 HOH F 2 247 2 HOH HOH . HA 4 HOH F 3 248 23 HOH HOH . HA 4 HOH F 4 249 27 HOH HOH . HA 4 HOH F 5 250 31 HOH HOH . HA 4 HOH F 6 251 32 HOH HOH . HA 4 HOH F 7 252 45 HOH HOH . HA 4 HOH F 8 253 47 HOH HOH . HA 4 HOH F 9 254 58 HOH HOH . HA 4 HOH F 10 255 60 HOH HOH . HA 4 HOH F 11 256 61 HOH HOH . HA 4 HOH F 12 257 64 HOH HOH . HA 4 HOH F 13 258 66 HOH HOH . HA 4 HOH F 14 259 76 HOH HOH . HA 4 HOH F 15 260 80 HOH HOH . HA 4 HOH F 16 261 86 HOH HOH . HA 4 HOH F 17 262 88 HOH HOH . HA 4 HOH F 18 263 97 HOH HOH . HA 4 HOH F 19 264 104 HOH HOH . HA 4 HOH F 20 265 109 HOH HOH . HA 4 HOH F 21 266 112 HOH HOH . HA 4 HOH F 22 267 121 HOH HOH . HA 4 HOH F 23 268 127 HOH HOH . HA 4 HOH F 24 269 128 HOH HOH . HA 4 HOH F 25 270 133 HOH HOH . HA 4 HOH F 26 271 137 HOH HOH . HA 4 HOH F 27 272 160 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Z _atom_site.label_entity_id 2 _atom_site.Cartn_x 70.354 _atom_site.Cartn_y 90.062 _atom_site.Cartn_z 12.625 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 43.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 230 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #