data_3E2C # _model_server_result.job_id dMUw9ESXAHpZlHOKWTvVaQ _model_server_result.datetime_utc '2024-11-08 13:54:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e2c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 3E2C # _exptl.entry_id 3E2C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3E2C _cell.length_a 33.639 _cell.length_b 91.089 _cell.length_c 102.085 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E2C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 18 A GLU 18 1_555 C ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc2 A OE1 GLU 51 A GLU 51 1_555 C ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? metalc ? metalc3 A SD MET 52 A MET 52 1_555 F FE HEM . A HEM 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.378 ? metalc ? metalc4 A SD MET 52 A MET 52 1_555 G FE HEM . A HEM 204 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.412 ? metalc ? metalc5 A ND1 HIS 54 A HIS 54 1_555 C ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc6 A OE2 GLU 127 A GLU 127 1_555 C ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc7 F FE HEM . A HEM 203 1_555 B SD MET 52 B MET 52 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc8 G FE HEM . A HEM 204 1_555 B SD MET 52 B MET 52 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc9 B OE2 GLU 18 B GLU 18 1_555 J ZN ZN . B ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc10 B OE1 GLU 51 B GLU 51 1_555 J ZN ZN . B ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? metalc ? metalc11 B ND1 HIS 54 B HIS 54 1_555 J ZN ZN . B ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc12 B OE2 GLU 127 B GLU 127 1_555 J ZN ZN . B ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 3E2C _atom_sites.fract_transf_matrix[1][1] 0.029727 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010978 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 200 200 ZN ZN . D 3 SO4 A 1 201 1 SO4 SO4 . E 3 SO4 A 1 202 2 SO4 SO4 . F 4 HEM A 1 203 100 HEM HEM . G 4 HEM A 1 204 100 HEM HEM . H 5 EDO A 1 301 301 EDO EDO . I 5 EDO A 1 302 302 EDO EDO . J 2 ZN B 1 200 200 ZN ZN . K 5 EDO B 1 301 301 EDO EDO . L 5 EDO B 1 302 302 EDO EDO . M 6 HOH A 1 303 1 HOH HOH . M 6 HOH A 2 304 2 HOH HOH . M 6 HOH A 3 305 5 HOH HOH . M 6 HOH A 4 306 6 HOH HOH . M 6 HOH A 5 307 7 HOH HOH . M 6 HOH A 6 308 9 HOH HOH . M 6 HOH A 7 309 10 HOH HOH . M 6 HOH A 8 310 11 HOH HOH . M 6 HOH A 9 311 12 HOH HOH . M 6 HOH A 10 312 13 HOH HOH . M 6 HOH A 11 313 14 HOH HOH . M 6 HOH A 12 314 15 HOH HOH . M 6 HOH A 13 315 16 HOH HOH . M 6 HOH A 14 316 17 HOH HOH . M 6 HOH A 15 317 18 HOH HOH . M 6 HOH A 16 318 20 HOH HOH . M 6 HOH A 17 319 21 HOH HOH . M 6 HOH A 18 320 22 HOH HOH . M 6 HOH A 19 321 25 HOH HOH . M 6 HOH A 20 322 26 HOH HOH . M 6 HOH A 21 323 27 HOH HOH . M 6 HOH A 22 324 31 HOH HOH . M 6 HOH A 23 325 33 HOH HOH . M 6 HOH A 24 326 34 HOH HOH . M 6 HOH A 25 327 35 HOH HOH . M 6 HOH A 26 328 38 HOH HOH . M 6 HOH A 27 329 39 HOH HOH . M 6 HOH A 28 330 40 HOH HOH . M 6 HOH A 29 331 42 HOH HOH . M 6 HOH A 30 332 43 HOH HOH . M 6 HOH A 31 333 44 HOH HOH . M 6 HOH A 32 334 45 HOH HOH . M 6 HOH A 33 335 46 HOH HOH . M 6 HOH A 34 336 47 HOH HOH . M 6 HOH A 35 337 50 HOH HOH . M 6 HOH A 36 338 53 HOH HOH . M 6 HOH A 37 339 55 HOH HOH . M 6 HOH A 38 340 57 HOH HOH . M 6 HOH A 39 341 58 HOH HOH . M 6 HOH A 40 342 59 HOH HOH . M 6 HOH A 41 343 60 HOH HOH . M 6 HOH A 42 344 63 HOH HOH . M 6 HOH A 43 345 64 HOH HOH . M 6 HOH A 44 346 65 HOH HOH . M 6 HOH A 45 347 66 HOH HOH . M 6 HOH A 46 348 69 HOH HOH . M 6 HOH A 47 349 71 HOH HOH . M 6 HOH A 48 350 72 HOH HOH . M 6 HOH A 49 351 75 HOH HOH . M 6 HOH A 50 352 76 HOH HOH . M 6 HOH A 51 353 77 HOH HOH . M 6 HOH A 52 354 79 HOH HOH . M 6 HOH A 53 355 80 HOH HOH . M 6 HOH A 54 356 81 HOH HOH . M 6 HOH A 55 357 82 HOH HOH . M 6 HOH A 56 358 83 HOH HOH . M 6 HOH A 57 359 87 HOH HOH . M 6 HOH A 58 360 88 HOH HOH . M 6 HOH A 59 361 91 HOH HOH . M 6 HOH A 60 362 92 HOH HOH . M 6 HOH A 61 363 93 HOH HOH . M 6 HOH A 62 364 94 HOH HOH . M 6 HOH A 63 365 96 HOH HOH . M 6 HOH A 64 366 97 HOH HOH . M 6 HOH A 65 367 99 HOH HOH . M 6 HOH A 66 368 100 HOH HOH . M 6 HOH A 67 369 105 HOH HOH . M 6 HOH A 68 370 106 HOH HOH . M 6 HOH A 69 371 107 HOH HOH . M 6 HOH A 70 372 108 HOH HOH . M 6 HOH A 71 373 109 HOH HOH . M 6 HOH A 72 374 110 HOH HOH . M 6 HOH A 73 375 113 HOH HOH . M 6 HOH A 74 376 115 HOH HOH . M 6 HOH A 75 377 116 HOH HOH . M 6 HOH A 76 378 120 HOH HOH . M 6 HOH A 77 379 123 HOH HOH . M 6 HOH A 78 380 124 HOH HOH . M 6 HOH A 79 381 126 HOH HOH . M 6 HOH A 80 382 127 HOH HOH . M 6 HOH A 81 383 129 HOH HOH . M 6 HOH A 82 384 130 HOH HOH . M 6 HOH A 83 385 131 HOH HOH . M 6 HOH A 84 386 134 HOH HOH . M 6 HOH A 85 387 135 HOH HOH . M 6 HOH A 86 388 136 HOH HOH . M 6 HOH A 87 389 137 HOH HOH . M 6 HOH A 88 390 139 HOH HOH . M 6 HOH A 89 391 140 HOH HOH . M 6 HOH A 90 392 141 HOH HOH . M 6 HOH A 91 393 146 HOH HOH . M 6 HOH A 92 394 148 HOH HOH . M 6 HOH A 93 395 150 HOH HOH . M 6 HOH A 94 396 152 HOH HOH . M 6 HOH A 95 397 154 HOH HOH . M 6 HOH A 96 398 155 HOH HOH . M 6 HOH A 97 399 156 HOH HOH . M 6 HOH A 98 400 157 HOH HOH . M 6 HOH A 99 401 158 HOH HOH . M 6 HOH A 100 402 160 HOH HOH . M 6 HOH A 101 403 163 HOH HOH . M 6 HOH A 102 404 170 HOH HOH . M 6 HOH A 103 405 171 HOH HOH . M 6 HOH A 104 406 173 HOH HOH . M 6 HOH A 105 407 174 HOH HOH . M 6 HOH A 106 408 176 HOH HOH . M 6 HOH A 107 409 178 HOH HOH . M 6 HOH A 108 410 180 HOH HOH . M 6 HOH A 109 411 181 HOH HOH . M 6 HOH A 110 412 184 HOH HOH . M 6 HOH A 111 413 187 HOH HOH . M 6 HOH A 112 414 189 HOH HOH . M 6 HOH A 113 415 191 HOH HOH . M 6 HOH A 114 416 193 HOH HOH . M 6 HOH A 115 417 194 HOH HOH . M 6 HOH A 116 418 195 HOH HOH . M 6 HOH A 117 419 198 HOH HOH . M 6 HOH A 118 420 199 HOH HOH . M 6 HOH A 119 421 200 HOH HOH . M 6 HOH A 120 422 201 HOH HOH . M 6 HOH A 121 423 202 HOH HOH . M 6 HOH A 122 424 206 HOH HOH . M 6 HOH A 123 425 208 HOH HOH . M 6 HOH A 124 426 210 HOH HOH . M 6 HOH A 125 427 211 HOH HOH . M 6 HOH A 126 428 212 HOH HOH . M 6 HOH A 127 429 213 HOH HOH . M 6 HOH A 128 430 214 HOH HOH . M 6 HOH A 129 431 215 HOH HOH . M 6 HOH A 130 432 218 HOH HOH . M 6 HOH A 131 433 219 HOH HOH . M 6 HOH A 132 434 220 HOH HOH . M 6 HOH A 133 435 221 HOH HOH . M 6 HOH A 134 436 222 HOH HOH . M 6 HOH A 135 437 223 HOH HOH . M 6 HOH A 136 438 224 HOH HOH . M 6 HOH A 137 439 225 HOH HOH . M 6 HOH A 138 440 227 HOH HOH . M 6 HOH A 139 441 228 HOH HOH . M 6 HOH A 140 442 175 HOH HOH . M 6 HOH A 141 443 197 HOH HOH . M 6 HOH A 142 444 209 HOH HOH . N 6 HOH B 1 303 3 HOH HOH . N 6 HOH B 2 304 4 HOH HOH . N 6 HOH B 3 305 8 HOH HOH . N 6 HOH B 4 306 19 HOH HOH . N 6 HOH B 5 307 23 HOH HOH . N 6 HOH B 6 308 24 HOH HOH . N 6 HOH B 7 309 28 HOH HOH . N 6 HOH B 8 310 29 HOH HOH . N 6 HOH B 9 311 30 HOH HOH . N 6 HOH B 10 312 32 HOH HOH . N 6 HOH B 11 313 36 HOH HOH . N 6 HOH B 12 314 37 HOH HOH . N 6 HOH B 13 315 41 HOH HOH . N 6 HOH B 14 316 48 HOH HOH . N 6 HOH B 15 317 49 HOH HOH . N 6 HOH B 16 318 51 HOH HOH . N 6 HOH B 17 319 52 HOH HOH . N 6 HOH B 18 320 54 HOH HOH . N 6 HOH B 19 321 56 HOH HOH . N 6 HOH B 20 322 61 HOH HOH . N 6 HOH B 21 323 62 HOH HOH . N 6 HOH B 22 324 67 HOH HOH . N 6 HOH B 23 325 68 HOH HOH . N 6 HOH B 24 326 70 HOH HOH . N 6 HOH B 25 327 73 HOH HOH . N 6 HOH B 26 328 74 HOH HOH . N 6 HOH B 27 329 78 HOH HOH . N 6 HOH B 28 330 84 HOH HOH . N 6 HOH B 29 331 85 HOH HOH . N 6 HOH B 30 332 86 HOH HOH . N 6 HOH B 31 333 89 HOH HOH . N 6 HOH B 32 334 90 HOH HOH . N 6 HOH B 33 335 95 HOH HOH . N 6 HOH B 34 336 98 HOH HOH . N 6 HOH B 35 337 101 HOH HOH . N 6 HOH B 36 338 102 HOH HOH . N 6 HOH B 37 339 103 HOH HOH . N 6 HOH B 38 340 104 HOH HOH . N 6 HOH B 39 341 111 HOH HOH . N 6 HOH B 40 342 112 HOH HOH . N 6 HOH B 41 343 114 HOH HOH . N 6 HOH B 42 344 117 HOH HOH . N 6 HOH B 43 345 118 HOH HOH . N 6 HOH B 44 346 119 HOH HOH . N 6 HOH B 45 347 121 HOH HOH . N 6 HOH B 46 348 122 HOH HOH . N 6 HOH B 47 349 125 HOH HOH . N 6 HOH B 48 350 128 HOH HOH . N 6 HOH B 49 351 132 HOH HOH . N 6 HOH B 50 352 133 HOH HOH . N 6 HOH B 51 353 138 HOH HOH . N 6 HOH B 52 354 142 HOH HOH . N 6 HOH B 53 355 143 HOH HOH . N 6 HOH B 54 356 144 HOH HOH . N 6 HOH B 55 357 145 HOH HOH . N 6 HOH B 56 358 147 HOH HOH . N 6 HOH B 57 359 149 HOH HOH . N 6 HOH B 58 360 151 HOH HOH . N 6 HOH B 59 361 153 HOH HOH . N 6 HOH B 60 362 159 HOH HOH . N 6 HOH B 61 363 161 HOH HOH . N 6 HOH B 62 364 162 HOH HOH . N 6 HOH B 63 365 164 HOH HOH . N 6 HOH B 64 366 165 HOH HOH . N 6 HOH B 65 367 166 HOH HOH . N 6 HOH B 66 368 167 HOH HOH . N 6 HOH B 67 369 168 HOH HOH . N 6 HOH B 68 370 169 HOH HOH . N 6 HOH B 69 371 172 HOH HOH . N 6 HOH B 70 373 177 HOH HOH . N 6 HOH B 71 374 179 HOH HOH . N 6 HOH B 72 375 182 HOH HOH . N 6 HOH B 73 376 183 HOH HOH . N 6 HOH B 74 377 185 HOH HOH . N 6 HOH B 75 378 186 HOH HOH . N 6 HOH B 76 379 188 HOH HOH . N 6 HOH B 77 380 190 HOH HOH . N 6 HOH B 78 381 192 HOH HOH . N 6 HOH B 79 382 196 HOH HOH . N 6 HOH B 80 384 203 HOH HOH . N 6 HOH B 81 385 204 HOH HOH . N 6 HOH B 82 386 205 HOH HOH . N 6 HOH B 83 387 207 HOH HOH . N 6 HOH B 84 389 216 HOH HOH . N 6 HOH B 85 390 217 HOH HOH . N 6 HOH B 86 391 226 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . K 5 8.918 -1.335 -28.72 1 27.45 ? C1 EDO 301 B 1 HETATM 2 O O1 EDO . . . K 5 7.564 -1.738 -28.465 1 25.95 ? O1 EDO 301 B 1 HETATM 3 C C2 EDO . . . K 5 8.983 0.121 -29.178 1 27.63 ? C2 EDO 301 B 1 HETATM 4 O O2 EDO . . . K 5 8.401 0.997 -28.203 1 28.82 ? O2 EDO 301 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #