data_3E2F
#
_model_server_result.job_id            AqOqlov1s2cUWwtVOQjYlQ 
_model_server_result.datetime_utc      '2024-12-04 11:31:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3e2f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":457}' 
#
_entry.id    3E2F 
#
_exptl.entry_id    3E2F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3E2F 
_cell.length_a            91.82 
_cell.length_b            91.82 
_cell.length_c            233.649 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3E2F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 239 A GLY 280 1_555 A N LLP 240 A LLP 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale2 A C LLP 240 A LLP 281 1_555 A N THR 241 A THR 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
covale ? covale3 B C GLY 239 B GLY 280 1_555 B N LLP 240 B LLP 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale4 B C LLP 240 B LLP 281 1_555 B N THR 241 B THR 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3E2F 
_atom_sites.fract_transf_matrix[1][1]    0.010891 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010891 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00428 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 456 1 GOL GOL . 
D 2 GOL A 1 457 1 GOL GOL . 
E 2 GOL A 1 458 1 GOL GOL . 
F 2 GOL A 1 459 1 GOL GOL . 
G 2 GOL A 1 460 1 GOL GOL . 
H 2 GOL A 1 461 1 GOL GOL . 
I 2 GOL B 1 456 1 GOL GOL . 
J 2 GOL B 1 457 1 GOL GOL . 
K 2 GOL B 1 458 1 GOL GOL . 
L 2 GOL B 1 459 1 GOL GOL . 
M 3 HOH A 1 462 1 HOH HOH . 
M 3 HOH A 2 463 2 HOH HOH . 
M 3 HOH A 3 464 3 HOH HOH . 
M 3 HOH A 4 465 4 HOH HOH . 
M 3 HOH A 5 466 6 HOH HOH . 
M 3 HOH A 6 467 13 HOH HOH . 
M 3 HOH A 7 468 14 HOH HOH . 
M 3 HOH A 8 469 19 HOH HOH . 
M 3 HOH A 9 470 20 HOH HOH . 
M 3 HOH A 10 471 21 HOH HOH . 
M 3 HOH A 11 472 25 HOH HOH . 
M 3 HOH A 12 473 28 HOH HOH . 
M 3 HOH A 13 474 30 HOH HOH . 
M 3 HOH A 14 475 34 HOH HOH . 
M 3 HOH A 15 476 35 HOH HOH . 
M 3 HOH A 16 477 36 HOH HOH . 
M 3 HOH A 17 478 37 HOH HOH . 
M 3 HOH A 18 479 38 HOH HOH . 
M 3 HOH A 19 480 39 HOH HOH . 
M 3 HOH A 20 481 40 HOH HOH . 
M 3 HOH A 21 482 44 HOH HOH . 
M 3 HOH A 22 483 45 HOH HOH . 
M 3 HOH A 23 484 53 HOH HOH . 
M 3 HOH A 24 485 56 HOH HOH . 
M 3 HOH A 25 486 59 HOH HOH . 
M 3 HOH A 26 487 60 HOH HOH . 
M 3 HOH A 27 488 61 HOH HOH . 
M 3 HOH A 28 489 67 HOH HOH . 
M 3 HOH A 29 490 68 HOH HOH . 
M 3 HOH A 30 491 69 HOH HOH . 
M 3 HOH A 31 492 70 HOH HOH . 
M 3 HOH A 32 493 71 HOH HOH . 
M 3 HOH A 33 494 72 HOH HOH . 
M 3 HOH A 34 495 74 HOH HOH . 
M 3 HOH A 35 496 75 HOH HOH . 
M 3 HOH A 36 497 78 HOH HOH . 
M 3 HOH A 37 498 81 HOH HOH . 
M 3 HOH A 38 499 82 HOH HOH . 
M 3 HOH A 39 500 86 HOH HOH . 
M 3 HOH A 40 501 88 HOH HOH . 
M 3 HOH A 41 502 93 HOH HOH . 
M 3 HOH A 42 503 95 HOH HOH . 
M 3 HOH A 43 504 96 HOH HOH . 
M 3 HOH A 44 505 109 HOH HOH . 
M 3 HOH A 45 506 110 HOH HOH . 
M 3 HOH A 46 507 111 HOH HOH . 
M 3 HOH A 47 508 112 HOH HOH . 
M 3 HOH A 48 509 119 HOH HOH . 
M 3 HOH A 49 510 120 HOH HOH . 
M 3 HOH A 50 511 121 HOH HOH . 
M 3 HOH A 51 512 122 HOH HOH . 
M 3 HOH A 52 513 128 HOH HOH . 
M 3 HOH A 53 514 131 HOH HOH . 
M 3 HOH A 54 515 132 HOH HOH . 
M 3 HOH A 55 516 133 HOH HOH . 
M 3 HOH A 56 517 134 HOH HOH . 
M 3 HOH A 57 518 135 HOH HOH . 
M 3 HOH A 58 519 136 HOH HOH . 
M 3 HOH A 59 520 137 HOH HOH . 
M 3 HOH A 60 521 138 HOH HOH . 
M 3 HOH A 61 522 140 HOH HOH . 
N 3 HOH B 1 460 5 HOH HOH . 
N 3 HOH B 2 461 7 HOH HOH . 
N 3 HOH B 3 462 8 HOH HOH . 
N 3 HOH B 4 463 9 HOH HOH . 
N 3 HOH B 5 464 10 HOH HOH . 
N 3 HOH B 6 465 11 HOH HOH . 
N 3 HOH B 7 466 12 HOH HOH . 
N 3 HOH B 8 467 15 HOH HOH . 
N 3 HOH B 9 468 16 HOH HOH . 
N 3 HOH B 10 469 17 HOH HOH . 
N 3 HOH B 11 470 18 HOH HOH . 
N 3 HOH B 12 471 22 HOH HOH . 
N 3 HOH B 13 472 23 HOH HOH . 
N 3 HOH B 14 473 24 HOH HOH . 
N 3 HOH B 15 474 26 HOH HOH . 
N 3 HOH B 16 475 27 HOH HOH . 
N 3 HOH B 17 476 29 HOH HOH . 
N 3 HOH B 18 477 31 HOH HOH . 
N 3 HOH B 19 478 32 HOH HOH . 
N 3 HOH B 20 479 33 HOH HOH . 
N 3 HOH B 21 480 41 HOH HOH . 
N 3 HOH B 22 481 42 HOH HOH . 
N 3 HOH B 23 482 43 HOH HOH . 
N 3 HOH B 24 483 46 HOH HOH . 
N 3 HOH B 25 484 47 HOH HOH . 
N 3 HOH B 26 485 48 HOH HOH . 
N 3 HOH B 27 486 49 HOH HOH . 
N 3 HOH B 28 487 50 HOH HOH . 
N 3 HOH B 29 488 51 HOH HOH . 
N 3 HOH B 30 489 52 HOH HOH . 
N 3 HOH B 31 490 54 HOH HOH . 
N 3 HOH B 32 491 55 HOH HOH . 
N 3 HOH B 33 492 57 HOH HOH . 
N 3 HOH B 34 493 58 HOH HOH . 
N 3 HOH B 35 494 62 HOH HOH . 
N 3 HOH B 36 495 63 HOH HOH . 
N 3 HOH B 37 496 64 HOH HOH . 
N 3 HOH B 38 497 65 HOH HOH . 
N 3 HOH B 39 498 66 HOH HOH . 
N 3 HOH B 40 499 73 HOH HOH . 
N 3 HOH B 41 500 76 HOH HOH . 
N 3 HOH B 42 501 77 HOH HOH . 
N 3 HOH B 43 502 79 HOH HOH . 
N 3 HOH B 44 503 80 HOH HOH . 
N 3 HOH B 45 504 83 HOH HOH . 
N 3 HOH B 46 505 84 HOH HOH . 
N 3 HOH B 47 506 85 HOH HOH . 
N 3 HOH B 48 507 87 HOH HOH . 
N 3 HOH B 49 508 89 HOH HOH . 
N 3 HOH B 50 509 90 HOH HOH . 
N 3 HOH B 51 510 91 HOH HOH . 
N 3 HOH B 52 511 92 HOH HOH . 
N 3 HOH B 53 512 94 HOH HOH . 
N 3 HOH B 54 513 97 HOH HOH . 
N 3 HOH B 55 514 98 HOH HOH . 
N 3 HOH B 56 515 99 HOH HOH . 
N 3 HOH B 57 516 100 HOH HOH . 
N 3 HOH B 58 517 101 HOH HOH . 
N 3 HOH B 59 518 102 HOH HOH . 
N 3 HOH B 60 519 103 HOH HOH . 
N 3 HOH B 61 520 104 HOH HOH . 
N 3 HOH B 62 521 105 HOH HOH . 
N 3 HOH B 63 522 106 HOH HOH . 
N 3 HOH B 64 523 107 HOH HOH . 
N 3 HOH B 65 524 108 HOH HOH . 
N 3 HOH B 66 525 113 HOH HOH . 
N 3 HOH B 67 526 114 HOH HOH . 
N 3 HOH B 68 527 115 HOH HOH . 
N 3 HOH B 69 528 116 HOH HOH . 
N 3 HOH B 70 529 117 HOH HOH . 
N 3 HOH B 71 530 118 HOH HOH . 
N 3 HOH B 72 531 123 HOH HOH . 
N 3 HOH B 73 532 124 HOH HOH . 
N 3 HOH B 74 533 125 HOH HOH . 
N 3 HOH B 75 534 126 HOH HOH . 
N 3 HOH B 76 535 127 HOH HOH . 
N 3 HOH B 77 536 129 HOH HOH . 
N 3 HOH B 78 537 130 HOH HOH . 
N 3 HOH B 79 538 139 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 2 -29.228 28.141 24.035 1 58.63 ? C1 GOL 457 A 1 
HETATM 2 O O1 GOL . . . D 2 -29.722 28.073 25.367 1 54.63 ? O1 GOL 457 A 1 
HETATM 3 C C2 GOL . . . D 2 -27.73 28.363 24.178 1 60.38 ? C2 GOL 457 A 1 
HETATM 4 O O2 GOL . . . D 2 -27.157 27.482 25.151 1 60.71 ? O2 GOL 457 A 1 
HETATM 5 C C3 GOL . . . D 2 -26.986 28.35 22.855 1 59.16 ? C3 GOL 457 A 1 
HETATM 6 O O3 GOL . . . D 2 -25.629 27.981 23.124 1 60.31 ? O3 GOL 457 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#