data_3E2I # _model_server_result.job_id mzsb4-YnfV4fsCzYQSsrlA _model_server_result.datetime_utc '2025-03-05 19:47:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e2i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 3E2I # _exptl.entry_id 3E2I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3E2I _cell.length_a 71.621 _cell.length_b 71.621 _cell.length_c 96.144 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E2I _symmetry.cell_setting ? _symmetry.Int_Tables_number 93 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 71.621 0 0 3 'crystal symmetry operation' 5_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 71.621 0 0 4 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 36 A SER 16 1_555 A N MSE 37 A MSE 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 37 A MSE 17 1_555 A N PHE 38 A PHE 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C ILE 94 A ILE 74 1_555 A N MSE 95 A MSE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 A C MSE 95 A MSE 75 1_555 A N THR 96 A THR 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 A C ASP 137 A ASP 117 1_555 A N MSE 138 A MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C MSE 138 A MSE 118 1_555 A N ASP 139 A ASP 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 A C PRO 147 A PRO 127 1_555 A N MSE 148 A MSE 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 A C MSE 148 A MSE 128 1_555 A N PRO 149 A PRO 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale9 A C LEU 151 A LEU 131 1_555 A N MSE 152 A MSE 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 A C MSE 152 A MSE 132 1_555 A N ALA 153 A ALA 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A SG CYS 165 A CYS 145 1_555 B ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc2 A SG CYS 168 A CYS 148 1_555 B ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc3 A SG CYS 203 A CYS 183 1_555 B ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc4 A ND1 HIS 206 A HIS 186 1_555 B ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3E2I _atom_sites.fract_transf_matrix[1][1] 0.013962 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013962 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 200 1 ZN ZN . C 3 GOL A 1 201 100 GOL GOL . D 4 HOH A 1 202 1 HOH HOH . D 4 HOH A 2 203 2 HOH HOH . D 4 HOH A 3 204 3 HOH HOH . D 4 HOH A 4 205 4 HOH HOH . D 4 HOH A 5 206 5 HOH HOH . D 4 HOH A 6 207 6 HOH HOH . D 4 HOH A 7 208 7 HOH HOH . D 4 HOH A 8 209 8 HOH HOH . D 4 HOH A 9 210 9 HOH HOH . D 4 HOH A 10 211 10 HOH HOH . D 4 HOH A 11 212 11 HOH HOH . D 4 HOH A 12 213 12 HOH HOH . D 4 HOH A 13 214 13 HOH HOH . D 4 HOH A 14 215 14 HOH HOH . D 4 HOH A 15 216 15 HOH HOH . D 4 HOH A 16 217 16 HOH HOH . D 4 HOH A 17 218 17 HOH HOH . D 4 HOH A 18 219 18 HOH HOH . D 4 HOH A 19 220 19 HOH HOH . D 4 HOH A 20 221 20 HOH HOH . D 4 HOH A 21 222 21 HOH HOH . D 4 HOH A 22 223 22 HOH HOH . D 4 HOH A 23 224 23 HOH HOH . D 4 HOH A 24 225 24 HOH HOH . D 4 HOH A 25 226 25 HOH HOH . D 4 HOH A 26 227 26 HOH HOH . D 4 HOH A 27 228 27 HOH HOH . D 4 HOH A 28 229 28 HOH HOH . D 4 HOH A 29 230 29 HOH HOH . D 4 HOH A 30 231 30 HOH HOH . D 4 HOH A 31 232 31 HOH HOH . D 4 HOH A 32 233 32 HOH HOH . D 4 HOH A 33 234 33 HOH HOH . D 4 HOH A 34 235 34 HOH HOH . D 4 HOH A 35 236 35 HOH HOH . D 4 HOH A 36 237 36 HOH HOH . D 4 HOH A 37 238 37 HOH HOH . D 4 HOH A 38 239 38 HOH HOH . D 4 HOH A 39 240 39 HOH HOH . D 4 HOH A 40 241 40 HOH HOH . D 4 HOH A 41 242 41 HOH HOH . D 4 HOH A 42 243 42 HOH HOH . D 4 HOH A 43 244 43 HOH HOH . D 4 HOH A 44 245 44 HOH HOH . D 4 HOH A 45 246 45 HOH HOH . D 4 HOH A 46 247 46 HOH HOH . D 4 HOH A 47 248 47 HOH HOH . D 4 HOH A 48 249 48 HOH HOH . D 4 HOH A 49 250 49 HOH HOH . D 4 HOH A 50 251 50 HOH HOH . D 4 HOH A 51 252 51 HOH HOH . D 4 HOH A 52 253 52 HOH HOH . D 4 HOH A 53 254 53 HOH HOH . D 4 HOH A 54 255 54 HOH HOH . D 4 HOH A 55 256 55 HOH HOH . D 4 HOH A 56 257 56 HOH HOH . D 4 HOH A 57 258 57 HOH HOH . D 4 HOH A 58 259 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 29.805 7.783 15.364 1 30.5 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . C 3 28.857 7.724 16.371 1 30.31 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . C 3 30.549 9.108 15.32 1 32.28 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . C 3 30.724 9.416 13.958 1 30.3 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . C 3 31.917 8.922 15.94 1 30.62 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . C 3 32.481 10.197 16.071 1 40.04 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 6 #