data_3E2Z
#
_model_server_result.job_id            r3a7cgHJSpyfhW3AfPgZnQ 
_model_server_result.datetime_utc      '2024-12-03 22:24:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3e2z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":457}' 
#
_entry.id    3E2Z 
#
_exptl.entry_id    3E2Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3E2Z 
_cell.length_a            91.49 
_cell.length_b            91.49 
_cell.length_c            233.501 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3E2Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 H N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 239 A GLY 280 1_555 A N LLP 240 A LLP 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 A C LLP 240 A LLP 281 1_555 A N THR 241 A THR 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3E2Z 
_atom_sites.fract_transf_matrix[1][1]    0.01093 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01093 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004283 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 KYN A 1 456 1 KYN KYN . 
D 4 GOL A 1 457 1 GOL GOL . 
E 4 GOL A 1 458 1 GOL GOL . 
F 5 PMP B 1 456 1 PMP PMP . 
G 3 KYN B 1 457 1 KYN KYN . 
H 4 GOL B 1 458 1 GOL GOL . 
I 4 GOL B 1 459 1 GOL GOL . 
J 6 HOH A 1 459 1 HOH HOH . 
J 6 HOH A 2 460 3 HOH HOH . 
J 6 HOH A 3 461 4 HOH HOH . 
J 6 HOH A 4 462 5 HOH HOH . 
J 6 HOH A 5 463 6 HOH HOH . 
J 6 HOH A 6 464 7 HOH HOH . 
J 6 HOH A 7 465 8 HOH HOH . 
J 6 HOH A 8 466 9 HOH HOH . 
J 6 HOH A 9 467 15 HOH HOH . 
J 6 HOH A 10 468 17 HOH HOH . 
J 6 HOH A 11 469 18 HOH HOH . 
J 6 HOH A 12 470 19 HOH HOH . 
J 6 HOH A 13 471 20 HOH HOH . 
J 6 HOH A 14 472 23 HOH HOH . 
J 6 HOH A 15 473 24 HOH HOH . 
J 6 HOH A 16 474 25 HOH HOH . 
J 6 HOH A 17 475 28 HOH HOH . 
J 6 HOH A 18 476 29 HOH HOH . 
J 6 HOH A 19 477 33 HOH HOH . 
J 6 HOH A 20 478 34 HOH HOH . 
J 6 HOH A 21 479 35 HOH HOH . 
J 6 HOH A 22 480 39 HOH HOH . 
J 6 HOH A 23 481 41 HOH HOH . 
J 6 HOH A 24 482 45 HOH HOH . 
J 6 HOH A 25 483 46 HOH HOH . 
J 6 HOH A 26 484 49 HOH HOH . 
J 6 HOH A 27 485 51 HOH HOH . 
J 6 HOH A 28 486 52 HOH HOH . 
J 6 HOH A 29 487 53 HOH HOH . 
J 6 HOH A 30 488 56 HOH HOH . 
J 6 HOH A 31 489 58 HOH HOH . 
J 6 HOH A 32 490 59 HOH HOH . 
J 6 HOH A 33 491 61 HOH HOH . 
J 6 HOH A 34 492 62 HOH HOH . 
J 6 HOH A 35 493 65 HOH HOH . 
J 6 HOH A 36 494 66 HOH HOH . 
J 6 HOH A 37 495 69 HOH HOH . 
J 6 HOH A 38 496 70 HOH HOH . 
J 6 HOH A 39 497 71 HOH HOH . 
J 6 HOH A 40 498 74 HOH HOH . 
J 6 HOH A 41 499 76 HOH HOH . 
J 6 HOH A 42 500 77 HOH HOH . 
J 6 HOH A 43 501 80 HOH HOH . 
J 6 HOH A 44 502 81 HOH HOH . 
J 6 HOH A 45 503 82 HOH HOH . 
J 6 HOH A 46 504 83 HOH HOH . 
K 6 HOH B 1 460 2 HOH HOH . 
K 6 HOH B 2 461 10 HOH HOH . 
K 6 HOH B 3 462 11 HOH HOH . 
K 6 HOH B 4 463 12 HOH HOH . 
K 6 HOH B 5 464 13 HOH HOH . 
K 6 HOH B 6 465 14 HOH HOH . 
K 6 HOH B 7 466 16 HOH HOH . 
K 6 HOH B 8 467 21 HOH HOH . 
K 6 HOH B 9 468 22 HOH HOH . 
K 6 HOH B 10 469 26 HOH HOH . 
K 6 HOH B 11 470 27 HOH HOH . 
K 6 HOH B 12 471 30 HOH HOH . 
K 6 HOH B 13 472 31 HOH HOH . 
K 6 HOH B 14 473 32 HOH HOH . 
K 6 HOH B 15 474 36 HOH HOH . 
K 6 HOH B 16 475 37 HOH HOH . 
K 6 HOH B 17 476 38 HOH HOH . 
K 6 HOH B 18 477 40 HOH HOH . 
K 6 HOH B 19 478 42 HOH HOH . 
K 6 HOH B 20 479 43 HOH HOH . 
K 6 HOH B 21 480 44 HOH HOH . 
K 6 HOH B 22 481 47 HOH HOH . 
K 6 HOH B 23 482 48 HOH HOH . 
K 6 HOH B 24 483 50 HOH HOH . 
K 6 HOH B 25 484 54 HOH HOH . 
K 6 HOH B 26 485 55 HOH HOH . 
K 6 HOH B 27 486 57 HOH HOH . 
K 6 HOH B 28 487 60 HOH HOH . 
K 6 HOH B 29 488 63 HOH HOH . 
K 6 HOH B 30 489 64 HOH HOH . 
K 6 HOH B 31 490 67 HOH HOH . 
K 6 HOH B 32 491 68 HOH HOH . 
K 6 HOH B 33 492 72 HOH HOH . 
K 6 HOH B 34 493 73 HOH HOH . 
K 6 HOH B 35 494 75 HOH HOH . 
K 6 HOH B 36 495 78 HOH HOH . 
K 6 HOH B 37 496 79 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 55.917 -21.529 -13.539 1 32.33 ? C1 GOL 457 A 1 
HETATM 2 O O1 GOL . . . D 4 55.252 -22.599 -12.97 1 22.76 ? O1 GOL 457 A 1 
HETATM 3 C C2 GOL . . . D 4 57.277 -22.13 -13.878 1 38.18 ? C2 GOL 457 A 1 
HETATM 4 O O2 GOL . . . D 4 57.894 -22.624 -12.747 1 39.11 ? O2 GOL 457 A 1 
HETATM 5 C C3 GOL . . . D 4 58.347 -21.199 -14.402 1 42.24 ? C3 GOL 457 A 1 
HETATM 6 O O3 GOL . . . D 4 58.491 -21.655 -15.734 1 47.33 ? O3 GOL 457 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    104 
_model_server_stats.query_time_ms           462 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#