data_3E3C # _model_server_result.job_id xHtXN1cHVbpGba3sBZvY_Q _model_server_result.datetime_utc '2024-12-05 13:12:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":150}' # _entry.id 3E3C # _exptl.entry_id 3E3C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.217 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-HYDROXY-3-(PHOSPHONOOXY)PROPYL HEXANOATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3E3C _cell.length_a 43.729 _cell.length_b 66.015 _cell.length_c 83.462 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C9 H19 O7 P' _chem_comp.formula_weight 270.217 _chem_comp.id HHG _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-HYDROXY-3-(PHOSPHONOOXY)PROPYL HEXANOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-MONOHEXANOYL-2-HYDROXY-SN-GLYCERO-3-PHOSPHATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2P P HHG sing 129 n n O2P H2P HHG sing 130 n n P O4P HHG doub 131 n n P O1P HHG sing 132 n n P O3P HHG sing 133 n n O1P H1P HHG sing 134 n n O3P C1 HHG sing 135 n n C1 C2 HHG sing 136 n n C1 H11 HHG sing 137 n n C1 H12 HHG sing 138 n n C2 O2 HHG sing 139 n n C2 C3 HHG sing 140 n n C2 H2 HHG sing 141 n n O2 HO2 HHG sing 142 n n C3 O3 HHG sing 143 n n C3 H31 HHG sing 144 n n C3 H32 HHG sing 145 n n O3 C4 HHG sing 146 n n C4 O1 HHG doub 147 n n C4 C5 HHG sing 148 n n C5 C6 HHG sing 149 n n C5 H51 HHG sing 150 n n C5 H52 HHG sing 151 n n C6 C7 HHG sing 152 n n C6 H61 HHG sing 153 n n C6 H62 HHG sing 154 n n C7 C8 HHG sing 155 n n C7 H71 HHG sing 156 n n C7 H72 HHG sing 157 n n C8 C9 HHG sing 158 n n C8 H81 HHG sing 159 n n C8 H82 HHG sing 160 n n C9 H91 HHG sing 161 n n C9 H92 HHG sing 162 n n C9 H93 HHG sing 163 n n # _atom_sites.entry_id 3E3C _atom_sites.fract_transf_matrix[1][1] 0.022868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011982 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HHG A 1 150 150 HHG HHG . D 2 HHG B 1 150 150 HHG HHG . E 3 HOH A 1 151 8 HOH TIP . E 3 HOH A 2 152 9 HOH TIP . E 3 HOH A 3 153 11 HOH TIP . E 3 HOH A 4 154 13 HOH TIP . E 3 HOH A 5 155 18 HOH TIP . E 3 HOH A 6 156 19 HOH TIP . E 3 HOH A 7 157 21 HOH TIP . E 3 HOH A 8 158 25 HOH TIP . E 3 HOH A 9 159 26 HOH TIP . E 3 HOH A 10 160 32 HOH TIP . E 3 HOH A 11 161 33 HOH TIP . E 3 HOH A 12 162 35 HOH TIP . E 3 HOH A 13 163 37 HOH TIP . E 3 HOH A 14 164 42 HOH TIP . E 3 HOH A 15 165 43 HOH TIP . E 3 HOH A 16 166 44 HOH TIP . E 3 HOH A 17 167 46 HOH TIP . E 3 HOH A 18 168 47 HOH TIP . E 3 HOH A 19 169 48 HOH TIP . E 3 HOH A 20 170 50 HOH TIP . E 3 HOH A 21 171 54 HOH TIP . E 3 HOH A 22 172 55 HOH TIP . E 3 HOH A 23 173 56 HOH TIP . E 3 HOH A 24 174 57 HOH TIP . E 3 HOH A 25 175 58 HOH TIP . E 3 HOH A 26 176 65 HOH TIP . E 3 HOH A 27 177 66 HOH TIP . E 3 HOH A 28 178 67 HOH TIP . E 3 HOH A 29 179 71 HOH TIP . E 3 HOH A 30 180 72 HOH TIP . E 3 HOH A 31 181 74 HOH TIP . E 3 HOH A 32 182 75 HOH TIP . E 3 HOH A 33 183 76 HOH TIP . E 3 HOH A 34 184 77 HOH TIP . E 3 HOH A 35 185 80 HOH TIP . E 3 HOH A 36 186 81 HOH TIP . E 3 HOH A 37 187 82 HOH TIP . E 3 HOH A 38 188 84 HOH TIP . E 3 HOH A 39 189 86 HOH TIP . E 3 HOH A 40 190 87 HOH TIP . E 3 HOH A 41 191 89 HOH TIP . E 3 HOH A 42 192 92 HOH TIP . E 3 HOH A 43 193 94 HOH TIP . E 3 HOH A 44 194 95 HOH TIP . E 3 HOH A 45 195 96 HOH TIP . E 3 HOH A 46 196 97 HOH TIP . E 3 HOH A 47 197 98 HOH TIP . E 3 HOH A 48 198 99 HOH TIP . E 3 HOH A 49 199 101 HOH TIP . E 3 HOH A 50 200 102 HOH TIP . E 3 HOH A 51 201 103 HOH TIP . E 3 HOH A 52 202 104 HOH TIP . E 3 HOH A 53 203 105 HOH TIP . E 3 HOH A 54 204 109 HOH TIP . E 3 HOH A 55 205 110 HOH TIP . E 3 HOH A 56 206 114 HOH TIP . E 3 HOH A 57 207 117 HOH TIP . E 3 HOH A 58 208 118 HOH TIP . E 3 HOH A 59 209 119 HOH TIP . E 3 HOH A 60 210 122 HOH TIP . E 3 HOH A 61 211 123 HOH TIP . E 3 HOH A 62 212 127 HOH TIP . E 3 HOH A 63 213 128 HOH TIP . E 3 HOH A 64 214 129 HOH TIP . E 3 HOH A 65 215 130 HOH TIP . E 3 HOH A 66 216 134 HOH TIP . E 3 HOH A 67 217 136 HOH TIP . E 3 HOH A 68 218 138 HOH TIP . E 3 HOH A 69 219 140 HOH TIP . E 3 HOH A 70 220 141 HOH TIP . E 3 HOH A 71 221 142 HOH TIP . E 3 HOH A 72 222 144 HOH TIP . E 3 HOH A 73 223 145 HOH TIP . E 3 HOH A 74 224 148 HOH TIP . E 3 HOH A 75 225 151 HOH TIP . E 3 HOH A 76 226 152 HOH TIP . E 3 HOH A 77 227 158 HOH TIP . E 3 HOH A 78 228 161 HOH TIP . E 3 HOH A 79 229 162 HOH TIP . E 3 HOH A 80 230 163 HOH TIP . E 3 HOH A 81 231 167 HOH TIP . E 3 HOH A 82 232 169 HOH TIP . E 3 HOH A 83 233 173 HOH TIP . E 3 HOH A 84 234 175 HOH TIP . E 3 HOH A 85 235 176 HOH TIP . E 3 HOH A 86 236 178 HOH TIP . E 3 HOH A 87 237 179 HOH TIP . E 3 HOH A 88 238 180 HOH TIP . E 3 HOH A 89 239 187 HOH TIP . E 3 HOH A 90 240 189 HOH TIP . E 3 HOH A 91 241 196 HOH TIP . E 3 HOH A 92 242 200 HOH TIP . E 3 HOH A 93 243 203 HOH TIP . E 3 HOH A 94 244 204 HOH TIP . E 3 HOH A 95 245 205 HOH TIP . E 3 HOH A 96 246 208 HOH TIP . E 3 HOH A 97 247 209 HOH TIP . E 3 HOH A 98 248 210 HOH TIP . E 3 HOH A 99 249 212 HOH TIP . E 3 HOH A 100 250 213 HOH TIP . E 3 HOH A 101 251 214 HOH TIP . E 3 HOH A 102 252 215 HOH TIP . E 3 HOH A 103 253 221 HOH TIP . E 3 HOH A 104 254 222 HOH TIP . E 3 HOH A 105 255 224 HOH TIP . E 3 HOH A 106 256 225 HOH TIP . E 3 HOH A 107 257 233 HOH TIP . E 3 HOH A 108 258 234 HOH TIP . E 3 HOH A 109 259 235 HOH TIP . E 3 HOH A 110 260 237 HOH TIP . E 3 HOH A 111 261 242 HOH TIP . E 3 HOH A 112 262 243 HOH TIP . E 3 HOH A 113 263 245 HOH TIP . E 3 HOH A 114 264 247 HOH TIP . E 3 HOH A 115 265 248 HOH TIP . E 3 HOH A 116 266 251 HOH TIP . E 3 HOH A 117 267 253 HOH TIP . E 3 HOH A 118 268 254 HOH TIP . E 3 HOH A 119 269 256 HOH TIP . E 3 HOH A 120 270 257 HOH TIP . E 3 HOH A 121 271 258 HOH TIP . F 3 HOH B 1 151 1 HOH TIP . F 3 HOH B 2 152 2 HOH TIP . F 3 HOH B 3 153 3 HOH TIP . F 3 HOH B 4 154 4 HOH TIP . F 3 HOH B 5 155 5 HOH TIP . F 3 HOH B 6 156 6 HOH TIP . F 3 HOH B 7 157 7 HOH TIP . F 3 HOH B 8 158 10 HOH TIP . F 3 HOH B 9 159 12 HOH TIP . F 3 HOH B 10 160 14 HOH TIP . F 3 HOH B 11 161 15 HOH TIP . F 3 HOH B 12 162 16 HOH TIP . F 3 HOH B 13 163 17 HOH TIP . F 3 HOH B 14 164 20 HOH TIP . F 3 HOH B 15 165 22 HOH TIP . F 3 HOH B 16 166 23 HOH TIP . F 3 HOH B 17 167 24 HOH TIP . F 3 HOH B 18 168 27 HOH TIP . F 3 HOH B 19 169 28 HOH TIP . F 3 HOH B 20 170 29 HOH TIP . F 3 HOH B 21 171 30 HOH TIP . F 3 HOH B 22 172 31 HOH TIP . F 3 HOH B 23 173 34 HOH TIP . F 3 HOH B 24 174 36 HOH TIP . F 3 HOH B 25 175 38 HOH TIP . F 3 HOH B 26 176 39 HOH TIP . F 3 HOH B 27 177 40 HOH TIP . F 3 HOH B 28 178 41 HOH TIP . F 3 HOH B 29 179 45 HOH TIP . F 3 HOH B 30 180 49 HOH TIP . F 3 HOH B 31 181 51 HOH TIP . F 3 HOH B 32 182 52 HOH TIP . F 3 HOH B 33 183 53 HOH TIP . F 3 HOH B 34 184 59 HOH TIP . F 3 HOH B 35 185 60 HOH TIP . F 3 HOH B 36 186 61 HOH TIP . F 3 HOH B 37 187 62 HOH TIP . F 3 HOH B 38 188 63 HOH TIP . F 3 HOH B 39 189 64 HOH TIP . F 3 HOH B 40 190 68 HOH TIP . F 3 HOH B 41 191 69 HOH TIP . F 3 HOH B 42 192 70 HOH TIP . F 3 HOH B 43 193 73 HOH TIP . F 3 HOH B 44 194 78 HOH TIP . F 3 HOH B 45 195 79 HOH TIP . F 3 HOH B 46 196 83 HOH TIP . F 3 HOH B 47 197 85 HOH TIP . F 3 HOH B 48 198 88 HOH TIP . F 3 HOH B 49 199 90 HOH TIP . F 3 HOH B 50 200 91 HOH TIP . F 3 HOH B 51 201 93 HOH TIP . F 3 HOH B 52 202 100 HOH TIP . F 3 HOH B 53 203 106 HOH TIP . F 3 HOH B 54 204 107 HOH TIP . F 3 HOH B 55 205 108 HOH TIP . F 3 HOH B 56 206 111 HOH TIP . F 3 HOH B 57 207 112 HOH TIP . F 3 HOH B 58 208 113 HOH TIP . F 3 HOH B 59 209 115 HOH TIP . F 3 HOH B 60 210 116 HOH TIP . F 3 HOH B 61 211 120 HOH TIP . F 3 HOH B 62 212 121 HOH TIP . F 3 HOH B 63 213 124 HOH TIP . F 3 HOH B 64 214 125 HOH TIP . F 3 HOH B 65 215 126 HOH TIP . F 3 HOH B 66 216 131 HOH TIP . F 3 HOH B 67 217 132 HOH TIP . F 3 HOH B 68 218 133 HOH TIP . F 3 HOH B 69 219 135 HOH TIP . F 3 HOH B 70 220 137 HOH TIP . F 3 HOH B 71 221 139 HOH TIP . F 3 HOH B 72 222 143 HOH TIP . F 3 HOH B 73 223 146 HOH TIP . F 3 HOH B 74 224 147 HOH TIP . F 3 HOH B 75 225 149 HOH TIP . F 3 HOH B 76 226 150 HOH TIP . F 3 HOH B 77 227 153 HOH TIP . F 3 HOH B 78 228 154 HOH TIP . F 3 HOH B 79 229 155 HOH TIP . F 3 HOH B 80 230 156 HOH TIP . F 3 HOH B 81 231 157 HOH TIP . F 3 HOH B 82 232 159 HOH TIP . F 3 HOH B 83 233 160 HOH TIP . F 3 HOH B 84 234 164 HOH TIP . F 3 HOH B 85 235 165 HOH TIP . F 3 HOH B 86 236 166 HOH TIP . F 3 HOH B 87 237 168 HOH TIP . F 3 HOH B 88 238 170 HOH TIP . F 3 HOH B 89 239 171 HOH TIP . F 3 HOH B 90 240 172 HOH TIP . F 3 HOH B 91 241 174 HOH TIP . F 3 HOH B 92 242 177 HOH TIP . F 3 HOH B 93 243 181 HOH TIP . F 3 HOH B 94 244 182 HOH TIP . F 3 HOH B 95 245 183 HOH TIP . F 3 HOH B 96 246 184 HOH TIP . F 3 HOH B 97 247 185 HOH TIP . F 3 HOH B 98 248 186 HOH TIP . F 3 HOH B 99 249 188 HOH TIP . F 3 HOH B 100 250 190 HOH TIP . F 3 HOH B 101 251 191 HOH TIP . F 3 HOH B 102 252 192 HOH TIP . F 3 HOH B 103 253 193 HOH TIP . F 3 HOH B 104 254 194 HOH TIP . F 3 HOH B 105 255 195 HOH TIP . F 3 HOH B 106 256 197 HOH TIP . F 3 HOH B 107 257 198 HOH TIP . F 3 HOH B 108 258 199 HOH TIP . F 3 HOH B 109 259 201 HOH TIP . F 3 HOH B 110 260 202 HOH TIP . F 3 HOH B 111 261 206 HOH TIP . F 3 HOH B 112 262 207 HOH TIP . F 3 HOH B 113 263 211 HOH TIP . F 3 HOH B 114 264 216 HOH TIP . F 3 HOH B 115 265 217 HOH TIP . F 3 HOH B 116 266 218 HOH TIP . F 3 HOH B 117 267 219 HOH TIP . F 3 HOH B 118 268 220 HOH TIP . F 3 HOH B 119 269 223 HOH TIP . F 3 HOH B 120 270 226 HOH TIP . F 3 HOH B 121 271 227 HOH TIP . F 3 HOH B 122 272 228 HOH TIP . F 3 HOH B 123 273 229 HOH TIP . F 3 HOH B 124 274 230 HOH TIP . F 3 HOH B 125 275 231 HOH TIP . F 3 HOH B 126 276 232 HOH TIP . F 3 HOH B 127 277 236 HOH TIP . F 3 HOH B 128 278 238 HOH TIP . F 3 HOH B 129 279 239 HOH TIP . F 3 HOH B 130 280 240 HOH TIP . F 3 HOH B 131 281 241 HOH TIP . F 3 HOH B 132 282 244 HOH TIP . F 3 HOH B 133 283 246 HOH TIP . F 3 HOH B 134 284 249 HOH TIP . F 3 HOH B 135 285 250 HOH TIP . F 3 HOH B 136 286 252 HOH TIP . F 3 HOH B 137 287 255 HOH TIP . F 3 HOH B 138 288 259 HOH TIP . F 3 HOH B 139 289 260 HOH TIP . F 3 HOH B 140 290 261 HOH TIP . F 3 HOH B 141 291 262 HOH TIP . F 3 HOH B 142 292 263 HOH TIP . F 3 HOH B 143 293 264 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2P HHG . . . C 2 4.087 23.301 33.365 1 88.35 ? O2P HHG 150 A 1 HETATM 2 P P HHG . . . C 2 3.787 24.671 32.8 1 88.23 ? P HHG 150 A 1 HETATM 3 O O4P HHG . . . C 2 4.163 25.798 33.734 1 88.6 ? O4P HHG 150 A 1 HETATM 4 O O1P HHG . . . C 2 2.351 24.816 32.331 1 88.45 ? O1P HHG 150 A 1 HETATM 5 O O3P HHG . . . C 2 4.745 24.813 31.5 1 86.95 ? O3P HHG 150 A 1 HETATM 6 C C1 HHG . . . C 2 6.14 25.07 31.627 1 84.23 ? C1 HHG 150 A 1 HETATM 7 C C2 HHG . . . C 2 6.759 25.207 30.238 1 82.8 ? C2 HHG 150 A 1 HETATM 8 O O2 HHG . . . C 2 5.891 25.995 29.396 1 82.99 ? O2 HHG 150 A 1 HETATM 9 C C3 HHG . . . C 2 8.126 25.869 30.388 1 82.06 ? C3 HHG 150 A 1 HETATM 10 O O3 HHG . . . C 2 8.74 26.007 29.104 1 81.84 ? O3 HHG 150 A 1 HETATM 11 C C4 HHG . . . C 2 10.061 25.464 28.794 1 80.78 ? C4 HHG 150 A 1 HETATM 12 O O1 HHG . . . C 2 10.704 24.851 29.651 1 82.14 ? O1 HHG 150 A 1 HETATM 13 C C5 HHG . . . C 2 10.596 25.688 27.391 1 78.69 ? C5 HHG 150 A 1 HETATM 14 C C6 HHG . . . C 2 11.978 25.079 27.18 1 77.01 ? C6 HHG 150 A 1 HETATM 15 C C7 HHG . . . C 2 13.031 26.175 27.153 1 75.45 ? C7 HHG 150 A 1 HETATM 16 C C8 HHG . . . C 2 14.092 25.887 26.102 1 74.81 ? C8 HHG 150 A 1 HETATM 17 C C9 HHG . . . C 2 15.376 25.296 26.647 1 73.55 ? C9 HHG 150 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 17 #