data_3E3K
#
_model_server_result.job_id            YmnHd3YtjirSHCdaMzgAKQ 
_model_server_result.datetime_utc      '2024-11-09 23:25:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3e3k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":508}' 
#
_entry.id    3E3K 
#
_exptl.entry_id    3E3K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              190.151 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-butane-1,2,4-tricarboxylic acid' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3E3K 
_cell.length_a            158.7 
_cell.length_b            158.7 
_cell.length_c            134.6 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3E3K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        171 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,U 1 1 
B,I,J,K,L,M,N,V 2 1 
C,O,P,Q,R,S,T,W 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 N N N 
? 5 T N N 
#
_chem_comp.formula           'C7 H10 O6' 
_chem_comp.formula_weight    190.151 
_chem_comp.id                HCT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-butane-1,2,4-tricarboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 HCT sing 135 n n 
C1 O1 HCT doub 136 n n 
C1 O2 HCT sing 137 n n 
C2 C3 HCT sing 138 n n 
C3 C4 HCT sing 139 n n 
C3 C7 HCT sing 140 n n 
C4 C5 HCT sing 141 n n 
C5 C6 HCT sing 142 n n 
C6 O3 HCT doub 143 n n 
C6 O4 HCT sing 144 n n 
C7 O5 HCT sing 145 n n 
C7 O6 HCT doub 146 n n 
C2 H2 HCT sing 147 n n 
C2 H2A HCT sing 148 n n 
C3 H3 HCT sing 149 n n 
C4 H4 HCT sing 150 n n 
C4 H4A HCT sing 151 n n 
C5 H5 HCT sing 152 n n 
C5 H5A HCT sing 153 n n 
O2 HO2 HCT sing 154 n n 
O4 HO4 HCT sing 155 n n 
O5 HO5 HCT sing 156 n n 
#
_atom_sites.entry_id                     3E3K 
_atom_sites.fract_transf_matrix[1][1]    0.006301 
_atom_sites.fract_transf_matrix[1][2]    0.003638 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007276 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007429 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 GOL A 1 503 5 GOL GOL . 
E 2 GOL A 1 504 6 GOL GOL . 
F 3 ACT A 1 505 12 ACT ACT . 
G 4 SO4 A 1 506 15 SO4 SO4 . 
H 5 HCT A 1 507 1 HCT HCT . 
I 6 CL B 1 503 3 CL CL . 
J 2 GOL B 1 504 7 GOL GOL . 
K 3 ACT B 1 505 8 ACT ACT . 
L 3 ACT B 1 506 11 ACT ACT . 
M 3 ACT B 1 507 14 ACT ACT . 
N 5 HCT B 1 508 2 HCT HCT . 
O 6 CL C 1 503 1 CL CL . 
P 6 CL C 1 504 2 CL CL . 
Q 6 CL C 1 505 4 CL CL . 
R 3 ACT C 1 506 9 ACT ACT . 
S 3 ACT C 1 507 13 ACT ACT . 
T 5 HCT C 1 508 3 HCT HCT . 
U 7 HOH A 1 508 1 HOH HOH . 
U 7 HOH A 2 509 3 HOH HOH . 
U 7 HOH A 3 510 25 HOH HOH . 
U 7 HOH A 4 511 27 HOH HOH . 
U 7 HOH A 5 512 28 HOH HOH . 
U 7 HOH A 6 513 29 HOH HOH . 
U 7 HOH A 7 514 31 HOH HOH . 
U 7 HOH A 8 515 32 HOH HOH . 
U 7 HOH A 9 516 33 HOH HOH . 
U 7 HOH A 10 517 34 HOH HOH . 
U 7 HOH A 11 518 35 HOH HOH . 
U 7 HOH A 12 519 36 HOH HOH . 
U 7 HOH A 13 520 38 HOH HOH . 
U 7 HOH A 14 521 39 HOH HOH . 
U 7 HOH A 15 522 40 HOH HOH . 
U 7 HOH A 16 523 45 HOH HOH . 
U 7 HOH A 17 524 50 HOH HOH . 
U 7 HOH A 18 525 51 HOH HOH . 
U 7 HOH A 19 526 52 HOH HOH . 
U 7 HOH A 20 527 53 HOH HOH . 
U 7 HOH A 21 528 54 HOH HOH . 
U 7 HOH A 22 529 69 HOH HOH . 
U 7 HOH A 23 530 70 HOH HOH . 
U 7 HOH A 24 531 71 HOH HOH . 
U 7 HOH A 25 532 72 HOH HOH . 
U 7 HOH A 26 533 73 HOH HOH . 
U 7 HOH A 27 534 74 HOH HOH . 
U 7 HOH A 28 535 101 HOH HOH . 
U 7 HOH A 29 536 104 HOH HOH . 
U 7 HOH A 30 537 105 HOH HOH . 
U 7 HOH A 31 538 108 HOH HOH . 
U 7 HOH A 32 539 110 HOH HOH . 
U 7 HOH A 33 540 111 HOH HOH . 
U 7 HOH A 34 541 113 HOH HOH . 
U 7 HOH A 35 542 116 HOH HOH . 
U 7 HOH A 36 543 119 HOH HOH . 
U 7 HOH A 37 544 120 HOH HOH . 
U 7 HOH A 38 545 121 HOH HOH . 
U 7 HOH A 39 546 123 HOH HOH . 
U 7 HOH A 40 547 126 HOH HOH . 
U 7 HOH A 41 548 127 HOH HOH . 
U 7 HOH A 42 549 128 HOH HOH . 
V 7 HOH B 1 509 4 HOH HOH . 
V 7 HOH B 2 510 5 HOH HOH . 
V 7 HOH B 3 511 6 HOH HOH . 
V 7 HOH B 4 512 11 HOH HOH . 
V 7 HOH B 5 513 13 HOH HOH . 
V 7 HOH B 6 514 16 HOH HOH . 
V 7 HOH B 7 515 18 HOH HOH . 
V 7 HOH B 8 516 19 HOH HOH . 
V 7 HOH B 9 517 22 HOH HOH . 
V 7 HOH B 10 518 41 HOH HOH . 
V 7 HOH B 11 519 42 HOH HOH . 
V 7 HOH B 12 520 43 HOH HOH . 
V 7 HOH B 13 521 56 HOH HOH . 
V 7 HOH B 14 522 59 HOH HOH . 
V 7 HOH B 15 523 60 HOH HOH . 
V 7 HOH B 16 524 61 HOH HOH . 
V 7 HOH B 17 525 62 HOH HOH . 
V 7 HOH B 18 526 68 HOH HOH . 
V 7 HOH B 19 527 76 HOH HOH . 
V 7 HOH B 20 528 78 HOH HOH . 
V 7 HOH B 21 529 79 HOH HOH . 
V 7 HOH B 22 530 81 HOH HOH . 
V 7 HOH B 23 531 82 HOH HOH . 
V 7 HOH B 24 532 83 HOH HOH . 
V 7 HOH B 25 533 84 HOH HOH . 
V 7 HOH B 26 534 85 HOH HOH . 
V 7 HOH B 27 535 86 HOH HOH . 
V 7 HOH B 28 536 87 HOH HOH . 
V 7 HOH B 29 537 88 HOH HOH . 
V 7 HOH B 30 538 103 HOH HOH . 
V 7 HOH B 31 539 114 HOH HOH . 
V 7 HOH B 32 540 122 HOH HOH . 
V 7 HOH B 33 541 129 HOH HOH . 
V 7 HOH B 34 542 132 HOH HOH . 
V 7 HOH B 35 543 133 HOH HOH . 
W 7 HOH C 1 509 8 HOH HOH . 
W 7 HOH C 2 510 9 HOH HOH . 
W 7 HOH C 3 511 14 HOH HOH . 
W 7 HOH C 4 512 15 HOH HOH . 
W 7 HOH C 5 513 17 HOH HOH . 
W 7 HOH C 6 514 47 HOH HOH . 
W 7 HOH C 7 515 48 HOH HOH . 
W 7 HOH C 8 516 49 HOH HOH . 
W 7 HOH C 9 517 58 HOH HOH . 
W 7 HOH C 10 518 64 HOH HOH . 
W 7 HOH C 11 519 65 HOH HOH . 
W 7 HOH C 12 520 66 HOH HOH . 
W 7 HOH C 13 521 67 HOH HOH . 
W 7 HOH C 14 522 90 HOH HOH . 
W 7 HOH C 15 523 91 HOH HOH . 
W 7 HOH C 16 524 92 HOH HOH . 
W 7 HOH C 17 525 93 HOH HOH . 
W 7 HOH C 18 526 94 HOH HOH . 
W 7 HOH C 19 527 96 HOH HOH . 
W 7 HOH C 20 528 98 HOH HOH . 
W 7 HOH C 21 529 100 HOH HOH . 
W 7 HOH C 22 530 106 HOH HOH . 
W 7 HOH C 23 531 115 HOH HOH . 
W 7 HOH C 24 532 125 HOH HOH . 
W 7 HOH C 25 533 130 HOH HOH . 
W 7 HOH C 26 534 131 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 HCT . A . N 5 8.645 -47.972 4.74 0.3 45.15 ? C1 HCT 508 B 1 
HETATM 2 C C1 HCT . B . N 5 8.418 -48.267 4.886 0.5 44.98 ? C1 HCT 508 B 1 
HETATM 3 C C2 HCT . A . N 5 9.583 -47.588 3.618 0.3 45.01 ? C2 HCT 508 B 1 
HETATM 4 C C2 HCT . B . N 5 9.175 -47.564 3.818 0.5 44.56 ? C2 HCT 508 B 1 
HETATM 5 C C3 HCT . A . N 5 9.688 -46.091 3.38 0.3 45.02 ? C3 HCT 508 B 1 
HETATM 6 C C3 HCT . B . N 5 9.598 -46.256 4.43 0.5 44.58 ? C3 HCT 508 B 1 
HETATM 7 C C4 HCT . A . N 5 11.061 -45.587 3.815 0.3 44.79 ? C4 HCT 508 B 1 
HETATM 8 C C4 HCT . B . N 5 10.786 -45.704 3.675 0.5 44.63 ? C4 HCT 508 B 1 
HETATM 9 C C5 HCT . A . N 5 12.06 -45.42 2.698 0.3 44.31 ? C5 HCT 508 B 1 
HETATM 10 C C5 HCT . B . N 5 12.082 -45.793 4.455 0.5 44 ? C5 HCT 508 B 1 
HETATM 11 C C6 HCT . A . N 5 13.323 -45.836 3.356 0.3 44.19 ? C6 HCT 508 B 1 
HETATM 12 C C6 HCT . B . N 5 13.026 -45.662 3.342 0.5 44.08 ? C6 HCT 508 B 1 
HETATM 13 C C7 HCT . A . N 5 8.671 -45.352 4.216 0.3 45.19 ? C7 HCT 508 B 1 
HETATM 14 C C7 HCT . B . N 5 8.5 -45.273 4.336 0.5 44.65 ? C7 HCT 508 B 1 
HETATM 15 O O1 HCT . A . N 5 8.144 -49.089 4.723 0.3 45.49 ? O1 HCT 508 B 1 
HETATM 16 O O1 HCT . B . N 5 8.191 -49.463 4.793 0.5 45.06 ? O1 HCT 508 B 1 
HETATM 17 O O2 HCT . A . N 5 8.462 -47.149 5.626 0.3 45.55 ? O2 HCT 508 B 1 
HETATM 18 O O2 HCT . B . N 5 8.028 -47.621 5.849 0.5 45.15 ? O2 HCT 508 B 1 
HETATM 19 O O3 HCT . A . N 5 13.221 -45.871 4.57 0.3 43.94 ? O3 HCT 508 B 1 
HETATM 20 O O3 HCT . B . N 5 14.122 -46.224 3.31 0.5 44.04 ? O3 HCT 508 B 1 
HETATM 21 O O4 HCT . A . N 5 14.322 -46.149 2.682 0.3 44.25 ? O4 HCT 508 B 1 
HETATM 22 O O4 HCT . B . N 5 12.58 -44.974 2.443 0.5 44.26 ? O4 HCT 508 B 1 
HETATM 23 O O5 HCT . A . N 5 7.517 -45.237 3.781 0.3 45.17 ? O5 HCT 508 B 1 
HETATM 24 O O5 HCT . B . N 5 7.5 -45.525 3.66 0.5 45 ? O5 HCT 508 B 1 
HETATM 25 O O6 HCT . A . N 5 9.09 -44.918 5.288 0.3 45.1 ? O6 HCT 508 B 1 
HETATM 26 O O6 HCT . B . N 5 8.652 -44.215 4.935 0.5 44.69 ? O6 HCT 508 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    49 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           26 
#