data_3E3K # _model_server_result.job_id FmVUVtBdPq1LVUZxcKqw_g _model_server_result.datetime_utc '2025-02-05 19:05:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e3k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":508}' # _entry.id 3E3K # _exptl.entry_id 3E3K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 190.151 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-butane-1,2,4-tricarboxylic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3E3K _cell.length_a 158.7 _cell.length_b 158.7 _cell.length_c 134.6 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E3K _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,U 1 1 B,I,J,K,L,M,N,V 2 1 C,O,P,Q,R,S,T,W 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 N N N ? 5 T N N # _chem_comp.formula 'C7 H10 O6' _chem_comp.formula_weight 190.151 _chem_comp.id HCT _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-butane-1,2,4-tricarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 HCT sing 135 n n C1 O1 HCT doub 136 n n C1 O2 HCT sing 137 n n C2 C3 HCT sing 138 n n C3 C4 HCT sing 139 n n C3 C7 HCT sing 140 n n C4 C5 HCT sing 141 n n C5 C6 HCT sing 142 n n C6 O3 HCT doub 143 n n C6 O4 HCT sing 144 n n C7 O5 HCT sing 145 n n C7 O6 HCT doub 146 n n C2 H2 HCT sing 147 n n C2 H2A HCT sing 148 n n C3 H3 HCT sing 149 n n C4 H4 HCT sing 150 n n C4 H4A HCT sing 151 n n C5 H5 HCT sing 152 n n C5 H5A HCT sing 153 n n O2 HO2 HCT sing 154 n n O4 HO4 HCT sing 155 n n O5 HO5 HCT sing 156 n n # _atom_sites.entry_id 3E3K _atom_sites.fract_transf_matrix[1][1] 0.006301 _atom_sites.fract_transf_matrix[1][2] 0.003638 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007429 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GOL A 1 503 5 GOL GOL . E 2 GOL A 1 504 6 GOL GOL . F 3 ACT A 1 505 12 ACT ACT . G 4 SO4 A 1 506 15 SO4 SO4 . H 5 HCT A 1 507 1 HCT HCT . I 6 CL B 1 503 3 CL CL . J 2 GOL B 1 504 7 GOL GOL . K 3 ACT B 1 505 8 ACT ACT . L 3 ACT B 1 506 11 ACT ACT . M 3 ACT B 1 507 14 ACT ACT . N 5 HCT B 1 508 2 HCT HCT . O 6 CL C 1 503 1 CL CL . P 6 CL C 1 504 2 CL CL . Q 6 CL C 1 505 4 CL CL . R 3 ACT C 1 506 9 ACT ACT . S 3 ACT C 1 507 13 ACT ACT . T 5 HCT C 1 508 3 HCT HCT . U 7 HOH A 1 508 1 HOH HOH . U 7 HOH A 2 509 3 HOH HOH . U 7 HOH A 3 510 25 HOH HOH . U 7 HOH A 4 511 27 HOH HOH . U 7 HOH A 5 512 28 HOH HOH . U 7 HOH A 6 513 29 HOH HOH . U 7 HOH A 7 514 31 HOH HOH . U 7 HOH A 8 515 32 HOH HOH . U 7 HOH A 9 516 33 HOH HOH . U 7 HOH A 10 517 34 HOH HOH . U 7 HOH A 11 518 35 HOH HOH . U 7 HOH A 12 519 36 HOH HOH . U 7 HOH A 13 520 38 HOH HOH . U 7 HOH A 14 521 39 HOH HOH . U 7 HOH A 15 522 40 HOH HOH . U 7 HOH A 16 523 45 HOH HOH . U 7 HOH A 17 524 50 HOH HOH . U 7 HOH A 18 525 51 HOH HOH . U 7 HOH A 19 526 52 HOH HOH . U 7 HOH A 20 527 53 HOH HOH . U 7 HOH A 21 528 54 HOH HOH . U 7 HOH A 22 529 69 HOH HOH . U 7 HOH A 23 530 70 HOH HOH . U 7 HOH A 24 531 71 HOH HOH . U 7 HOH A 25 532 72 HOH HOH . U 7 HOH A 26 533 73 HOH HOH . U 7 HOH A 27 534 74 HOH HOH . U 7 HOH A 28 535 101 HOH HOH . U 7 HOH A 29 536 104 HOH HOH . U 7 HOH A 30 537 105 HOH HOH . U 7 HOH A 31 538 108 HOH HOH . U 7 HOH A 32 539 110 HOH HOH . U 7 HOH A 33 540 111 HOH HOH . U 7 HOH A 34 541 113 HOH HOH . U 7 HOH A 35 542 116 HOH HOH . U 7 HOH A 36 543 119 HOH HOH . U 7 HOH A 37 544 120 HOH HOH . U 7 HOH A 38 545 121 HOH HOH . U 7 HOH A 39 546 123 HOH HOH . U 7 HOH A 40 547 126 HOH HOH . U 7 HOH A 41 548 127 HOH HOH . U 7 HOH A 42 549 128 HOH HOH . V 7 HOH B 1 509 4 HOH HOH . V 7 HOH B 2 510 5 HOH HOH . V 7 HOH B 3 511 6 HOH HOH . V 7 HOH B 4 512 11 HOH HOH . V 7 HOH B 5 513 13 HOH HOH . V 7 HOH B 6 514 16 HOH HOH . V 7 HOH B 7 515 18 HOH HOH . V 7 HOH B 8 516 19 HOH HOH . V 7 HOH B 9 517 22 HOH HOH . V 7 HOH B 10 518 41 HOH HOH . V 7 HOH B 11 519 42 HOH HOH . V 7 HOH B 12 520 43 HOH HOH . V 7 HOH B 13 521 56 HOH HOH . V 7 HOH B 14 522 59 HOH HOH . V 7 HOH B 15 523 60 HOH HOH . V 7 HOH B 16 524 61 HOH HOH . V 7 HOH B 17 525 62 HOH HOH . V 7 HOH B 18 526 68 HOH HOH . V 7 HOH B 19 527 76 HOH HOH . V 7 HOH B 20 528 78 HOH HOH . V 7 HOH B 21 529 79 HOH HOH . V 7 HOH B 22 530 81 HOH HOH . V 7 HOH B 23 531 82 HOH HOH . V 7 HOH B 24 532 83 HOH HOH . V 7 HOH B 25 533 84 HOH HOH . V 7 HOH B 26 534 85 HOH HOH . V 7 HOH B 27 535 86 HOH HOH . V 7 HOH B 28 536 87 HOH HOH . V 7 HOH B 29 537 88 HOH HOH . V 7 HOH B 30 538 103 HOH HOH . V 7 HOH B 31 539 114 HOH HOH . V 7 HOH B 32 540 122 HOH HOH . V 7 HOH B 33 541 129 HOH HOH . V 7 HOH B 34 542 132 HOH HOH . V 7 HOH B 35 543 133 HOH HOH . W 7 HOH C 1 509 8 HOH HOH . W 7 HOH C 2 510 9 HOH HOH . W 7 HOH C 3 511 14 HOH HOH . W 7 HOH C 4 512 15 HOH HOH . W 7 HOH C 5 513 17 HOH HOH . W 7 HOH C 6 514 47 HOH HOH . W 7 HOH C 7 515 48 HOH HOH . W 7 HOH C 8 516 49 HOH HOH . W 7 HOH C 9 517 58 HOH HOH . W 7 HOH C 10 518 64 HOH HOH . W 7 HOH C 11 519 65 HOH HOH . W 7 HOH C 12 520 66 HOH HOH . W 7 HOH C 13 521 67 HOH HOH . W 7 HOH C 14 522 90 HOH HOH . W 7 HOH C 15 523 91 HOH HOH . W 7 HOH C 16 524 92 HOH HOH . W 7 HOH C 17 525 93 HOH HOH . W 7 HOH C 18 526 94 HOH HOH . W 7 HOH C 19 527 96 HOH HOH . W 7 HOH C 20 528 98 HOH HOH . W 7 HOH C 21 529 100 HOH HOH . W 7 HOH C 22 530 106 HOH HOH . W 7 HOH C 23 531 115 HOH HOH . W 7 HOH C 24 532 125 HOH HOH . W 7 HOH C 25 533 130 HOH HOH . W 7 HOH C 26 534 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HCT . . . T 5 -14.291 -58.851 18.613 1 94.64 ? C1 HCT 508 C 1 HETATM 2 C C2 HCT . . . T 5 -15.211 -60 18.155 1 94.48 ? C2 HCT 508 C 1 HETATM 3 C C3 HCT . . . T 5 -16.669 -59.908 18.664 1 94.14 ? C3 HCT 508 C 1 HETATM 4 C C4 HCT . . . T 5 -17.318 -61.304 18.518 1 93.16 ? C4 HCT 508 C 1 HETATM 5 C C5 HCT . . . T 5 -18.839 -61.35 18.748 1 91.7 ? C5 HCT 508 C 1 HETATM 6 C C6 HCT . . . T 5 -19.243 -62.232 19.934 1 90.71 ? C6 HCT 508 C 1 HETATM 7 C C7 HCT . . . T 5 -17.448 -58.82 17.887 1 94.63 ? C7 HCT 508 C 1 HETATM 8 O O1 HCT . . . T 5 -14.759 -57.69 18.629 1 94.74 ? O1 HCT 508 C 1 HETATM 9 O O2 HCT . . . T 5 -13.122 -59.162 18.93 1 94.81 ? O2 HCT 508 C 1 HETATM 10 O O3 HCT . . . T 5 -18.416 -63.072 20.342 1 90.1 ? O3 HCT 508 C 1 HETATM 11 O O4 HCT . . . T 5 -20.381 -62.046 20.408 1 90.63 ? O4 HCT 508 C 1 HETATM 12 O O5 HCT . . . T 5 -18.512 -58.408 18.397 1 95.02 ? O5 HCT 508 C 1 HETATM 13 O O6 HCT . . . T 5 -16.964 -58.41 16.807 1 95.01 ? O6 HCT 508 C 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #