data_3E3O
#
_model_server_result.job_id            BwCBM1OmR5ixBOmE1nh04w 
_model_server_result.datetime_utc      '2024-10-13 13:11:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3e3o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":920}' 
#
_entry.id    3E3O 
#
_exptl.entry_id    3E3O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              348.206 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'INOSINIC ACID' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.1 
_cell.angle_gamma         90 
_cell.entry_id            3E3O 
_cell.length_a            118.68 
_cell.length_b            188.448 
_cell.length_c            87.853 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3E3O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,Q,R 1 1 
C,D,K,L,M,N,O,P,S,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 J N N 
? 3 M N N 
? 3 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MET 679 A MET 679 1_555 A N LLP 680 A LLP 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C LLP 680 A LLP 680 1_555 A N PHE 681 A PHE 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 B C MET 679 B MET 679 1_555 B N LLP 680 B LLP 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 B C LLP 680 B LLP 680 1_555 B N PHE 681 B PHE 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale5 C C MET 679 C MET 679 1_555 C N LLP 680 C LLP 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale6 C C LLP 680 C LLP 680 1_555 C N PHE 681 C PHE 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale7 D C MET 679 D MET 679 1_555 D N LLP 680 D LLP 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale8 D C LLP 680 D LLP 680 1_555 D N PHE 681 D PHE 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C10 H13 N4 O8 P' 
_chem_comp.formula_weight    348.206 
_chem_comp.id                IMP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'INOSINIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P IMP doub 173 n n 
P O2P IMP sing 174 n n 
P O3P IMP sing 175 n n 
P O5' IMP sing 176 n n 
O2P HOP2 IMP sing 177 n n 
O3P HOP3 IMP sing 178 n n 
O5' C5' IMP sing 179 n n 
C5' C4' IMP sing 180 n n 
C5' "H5'1" IMP sing 181 n n 
C5' "H5'2" IMP sing 182 n n 
C4' O4' IMP sing 183 n n 
C4' C3' IMP sing 184 n n 
C4' H4' IMP sing 185 n n 
O4' C1' IMP sing 186 n n 
C3' O3' IMP sing 187 n n 
C3' C2' IMP sing 188 n n 
C3' H3' IMP sing 189 n n 
O3' HO3' IMP sing 190 n n 
C2' O2' IMP sing 191 n n 
C2' C1' IMP sing 192 n n 
C2' H2' IMP sing 193 n n 
O2' HO2' IMP sing 194 n n 
C1' N9 IMP sing 195 n n 
C1' H1' IMP sing 196 n n 
N9 C8 IMP sing 197 n y 
N9 C4 IMP sing 198 n y 
C8 N7 IMP doub 199 n y 
C8 H8 IMP sing 200 n n 
N7 C5 IMP sing 201 n y 
C5 C6 IMP sing 202 n n 
C5 C4 IMP doub 203 n y 
C6 O6 IMP doub 204 n n 
C6 N1 IMP sing 205 n n 
N1 C2 IMP sing 206 n n 
N1 HN1 IMP sing 207 n n 
C2 N3 IMP doub 208 n n 
C2 H2 IMP sing 209 n n 
N3 C4 IMP sing 210 n n 
#
_atom_sites.entry_id                     3E3O 
_atom_sites.fract_transf_matrix[1][1]    0.008426 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002918 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005307 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012046 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 901 901 SO4 SO4 . 
F 3 IMP A 1 920 920 IMP IMP . 
G 2 SO4 B 1 900 900 SO4 SO4 . 
H 2 SO4 B 1 901 900 SO4 SO4 . 
I 2 SO4 B 1 902 901 SO4 SO4 . 
J 3 IMP B 1 920 920 IMP IMP . 
K 2 SO4 C 1 900 900 SO4 SO4 . 
L 2 SO4 C 1 901 901 SO4 SO4 . 
M 3 IMP C 1 920 920 IMP IMP . 
N 2 SO4 D 1 900 900 SO4 SO4 . 
O 2 SO4 D 1 901 901 SO4 SO4 . 
P 3 IMP D 1 920 920 IMP IMP . 
Q 4 HOH A 1 921 4 HOH HOH . 
Q 4 HOH A 2 922 11 HOH HOH . 
Q 4 HOH A 3 923 12 HOH HOH . 
Q 4 HOH A 4 924 13 HOH HOH . 
Q 4 HOH A 5 925 15 HOH HOH . 
Q 4 HOH A 6 926 24 HOH HOH . 
Q 4 HOH A 7 927 34 HOH HOH . 
Q 4 HOH A 8 928 40 HOH HOH . 
Q 4 HOH A 9 929 42 HOH HOH . 
Q 4 HOH A 10 930 45 HOH HOH . 
Q 4 HOH A 11 931 48 HOH HOH . 
Q 4 HOH A 12 932 50 HOH HOH . 
Q 4 HOH A 13 933 53 HOH HOH . 
Q 4 HOH A 14 934 57 HOH HOH . 
Q 4 HOH A 15 935 59 HOH HOH . 
Q 4 HOH A 16 936 60 HOH HOH . 
Q 4 HOH A 17 937 61 HOH HOH . 
Q 4 HOH A 18 938 62 HOH HOH . 
Q 4 HOH A 19 939 64 HOH HOH . 
Q 4 HOH A 20 940 67 HOH HOH . 
Q 4 HOH A 21 941 77 HOH HOH . 
Q 4 HOH A 22 942 85 HOH HOH . 
Q 4 HOH A 23 943 89 HOH HOH . 
Q 4 HOH A 24 944 91 HOH HOH . 
Q 4 HOH A 25 945 95 HOH HOH . 
Q 4 HOH A 26 946 96 HOH HOH . 
Q 4 HOH A 27 947 97 HOH HOH . 
Q 4 HOH A 28 948 102 HOH HOH . 
Q 4 HOH A 29 949 110 HOH HOH . 
Q 4 HOH A 30 950 111 HOH HOH . 
R 4 HOH B 1 921 1 HOH HOH . 
R 4 HOH B 2 922 5 HOH HOH . 
R 4 HOH B 3 923 6 HOH HOH . 
R 4 HOH B 4 924 8 HOH HOH . 
R 4 HOH B 5 925 9 HOH HOH . 
R 4 HOH B 6 926 32 HOH HOH . 
R 4 HOH B 7 927 33 HOH HOH . 
R 4 HOH B 8 928 38 HOH HOH . 
R 4 HOH B 9 929 39 HOH HOH . 
R 4 HOH B 10 930 41 HOH HOH . 
R 4 HOH B 11 931 43 HOH HOH . 
R 4 HOH B 12 932 44 HOH HOH . 
R 4 HOH B 13 933 52 HOH HOH . 
R 4 HOH B 14 934 55 HOH HOH . 
R 4 HOH B 15 935 58 HOH HOH . 
R 4 HOH B 16 936 63 HOH HOH . 
R 4 HOH B 17 937 71 HOH HOH . 
R 4 HOH B 18 938 74 HOH HOH . 
R 4 HOH B 19 939 81 HOH HOH . 
R 4 HOH B 20 940 86 HOH HOH . 
R 4 HOH B 21 941 87 HOH HOH . 
R 4 HOH B 22 942 88 HOH HOH . 
R 4 HOH B 23 943 92 HOH HOH . 
R 4 HOH B 24 944 94 HOH HOH . 
R 4 HOH B 25 945 99 HOH HOH . 
R 4 HOH B 26 946 100 HOH HOH . 
R 4 HOH B 27 947 104 HOH HOH . 
R 4 HOH B 28 948 105 HOH HOH . 
R 4 HOH B 29 949 107 HOH HOH . 
R 4 HOH B 30 950 108 HOH HOH . 
R 4 HOH B 31 951 109 HOH HOH . 
R 4 HOH B 32 952 113 HOH HOH . 
R 4 HOH B 33 953 116 HOH HOH . 
S 4 HOH C 1 921 2 HOH HOH . 
S 4 HOH C 2 922 3 HOH HOH . 
S 4 HOH C 3 923 10 HOH HOH . 
S 4 HOH C 4 924 14 HOH HOH . 
S 4 HOH C 5 925 16 HOH HOH . 
S 4 HOH C 6 926 18 HOH HOH . 
S 4 HOH C 7 927 21 HOH HOH . 
S 4 HOH C 8 928 23 HOH HOH . 
S 4 HOH C 9 929 25 HOH HOH . 
S 4 HOH C 10 930 26 HOH HOH . 
S 4 HOH C 11 931 29 HOH HOH . 
S 4 HOH C 12 932 30 HOH HOH . 
S 4 HOH C 13 933 36 HOH HOH . 
S 4 HOH C 14 934 37 HOH HOH . 
S 4 HOH C 15 935 46 HOH HOH . 
S 4 HOH C 16 936 47 HOH HOH . 
S 4 HOH C 17 937 49 HOH HOH . 
S 4 HOH C 18 938 51 HOH HOH . 
S 4 HOH C 19 939 56 HOH HOH . 
S 4 HOH C 20 940 65 HOH HOH . 
S 4 HOH C 21 941 69 HOH HOH . 
S 4 HOH C 22 942 70 HOH HOH . 
S 4 HOH C 23 943 72 HOH HOH . 
S 4 HOH C 24 944 78 HOH HOH . 
S 4 HOH C 25 945 79 HOH HOH . 
S 4 HOH C 26 946 80 HOH HOH . 
S 4 HOH C 27 947 82 HOH HOH . 
S 4 HOH C 28 948 83 HOH HOH . 
S 4 HOH C 29 949 103 HOH HOH . 
S 4 HOH C 30 950 106 HOH HOH . 
S 4 HOH C 31 951 112 HOH HOH . 
S 4 HOH C 32 952 114 HOH HOH . 
S 4 HOH C 33 953 115 HOH HOH . 
T 4 HOH D 1 921 7 HOH HOH . 
T 4 HOH D 2 922 17 HOH HOH . 
T 4 HOH D 3 923 19 HOH HOH . 
T 4 HOH D 4 924 20 HOH HOH . 
T 4 HOH D 5 925 22 HOH HOH . 
T 4 HOH D 6 926 27 HOH HOH . 
T 4 HOH D 7 927 28 HOH HOH . 
T 4 HOH D 8 928 31 HOH HOH . 
T 4 HOH D 9 929 35 HOH HOH . 
T 4 HOH D 10 930 54 HOH HOH . 
T 4 HOH D 11 931 66 HOH HOH . 
T 4 HOH D 12 932 68 HOH HOH . 
T 4 HOH D 13 933 73 HOH HOH . 
T 4 HOH D 14 934 75 HOH HOH . 
T 4 HOH D 15 935 76 HOH HOH . 
T 4 HOH D 16 936 84 HOH HOH . 
T 4 HOH D 17 937 90 HOH HOH . 
T 4 HOH D 18 938 93 HOH HOH . 
T 4 HOH D 19 939 98 HOH HOH . 
T 4 HOH D 20 940 101 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P IMP . . . P 3 74.047 63.789 33.811 1 54.9 ? P IMP 920 D 1 
HETATM 2 O O1P IMP . . . P 3 72.786 64.592 33.553 1 54.75 ? O1P IMP 920 D 1 
HETATM 3 O O2P IMP . . . P 3 73.914 62.461 33.079 1 55.79 ? O2P IMP 920 D 1 
HETATM 4 O O3P IMP . . . P 3 74.249 63.615 35.297 1 51.57 ? O3P IMP 920 D 1 
HETATM 5 O O5' IMP . . . P 3 75.317 64.574 33.195 1 58.24 ? O5' IMP 920 D 1 
HETATM 6 C C5' IMP . . . P 3 75.632 64.474 31.818 1 63.98 ? C5' IMP 920 D 1 
HETATM 7 C C4' IMP . . . P 3 76.271 65.766 31.317 1 68.68 ? C4' IMP 920 D 1 
HETATM 8 O O4' IMP . . . P 3 75.514 66.891 31.748 1 70.64 ? O4' IMP 920 D 1 
HETATM 9 C C3' IMP . . . P 3 77.693 65.986 31.832 1 70.4 ? C3' IMP 920 D 1 
HETATM 10 O O3' IMP . . . P 3 78.674 65.471 30.945 1 70.94 ? O3' IMP 920 D 1 
HETATM 11 C C2' IMP . . . P 3 77.785 67.496 31.968 1 71.05 ? C2' IMP 920 D 1 
HETATM 12 O O2' IMP . . . P 3 78.266 68.051 30.759 1 70.95 ? O2' IMP 920 D 1 
HETATM 13 C C1' IMP . . . P 3 76.349 67.959 32.168 1 71.84 ? C1' IMP 920 D 1 
HETATM 14 N N9 IMP . . . P 3 76.048 68.316 33.572 1 72.18 ? N9 IMP 920 D 1 
HETATM 15 C C8 IMP . . . P 3 75.69 67.45 34.573 1 72.65 ? C8 IMP 920 D 1 
HETATM 16 N N7 IMP . . . P 3 75.481 68.148 35.713 1 72.71 ? N7 IMP 920 D 1 
HETATM 17 C C5 IMP . . . P 3 75.697 69.459 35.462 1 72.8 ? C5 IMP 920 D 1 
HETATM 18 C C6 IMP . . . P 3 75.625 70.6 36.264 1 72.41 ? C6 IMP 920 D 1 
HETATM 19 O O6 IMP . . . P 3 75.314 70.51 37.447 1 72.64 ? O6 IMP 920 D 1 
HETATM 20 N N1 IMP . . . P 3 75.903 71.842 35.728 1 72.4 ? N1 IMP 920 D 1 
HETATM 21 C C2 IMP . . . P 3 76.251 71.953 34.393 1 72.68 ? C2 IMP 920 D 1 
HETATM 22 N N3 IMP . . . P 3 76.322 70.817 33.598 1 73.32 ? N3 IMP 920 D 1 
HETATM 23 C C4 IMP . . . P 3 76.049 69.582 34.117 1 73.07 ? C4 IMP 920 D 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           23 
#