data_3E5A # _model_server_result.job_id UWwELrBKa0ATeOSm2oup5g _model_server_result.datetime_utc '2024-10-14 18:28:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e5a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 3E5A # _exptl.entry_id 3E5A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 464.586 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYCLOPROPANECARBOXYLIC ACID {4-[4-(4-METHYL-PIPERAZIN-1-YL)-6-(5-METHYL-2H-PYRAZOL-3-YLAMINO)-PYRIMIDIN-2-YLSULFANYL]-PHENYL}-AMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3E5A _cell.length_a 87.186 _cell.length_b 89.097 _cell.length_c 88.499 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E5A _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 164 A THR 287 1_555 A N TPO 165 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.291 ? covale ? covale2 A C TPO 165 A TPO 288 1_555 A N LEU 166 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? # _chem_comp.formula 'C23 H28 N8 O S' _chem_comp.formula_weight 464.586 _chem_comp.id VX6 _chem_comp.mon_nstd_flag . _chem_comp.name 'CYCLOPROPANECARBOXYLIC ACID {4-[4-(4-METHYL-PIPERAZIN-1-YL)-6-(5-METHYL-2H-PYRAZOL-3-YLAMINO)-PYRIMIDIN-2-YLSULFANYL]-PHENYL}-AMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 VX6 sing 401 n n N1 C6 VX6 sing 402 n n N1 C7 VX6 sing 403 n n C2 C3 VX6 sing 404 n n C2 H21 VX6 sing 405 n n C2 H22 VX6 sing 406 n n C3 N4 VX6 sing 407 n n C3 H31 VX6 sing 408 n n C3 H32 VX6 sing 409 n n N4 C5 VX6 sing 410 n n N4 C8 VX6 sing 411 n n C5 C6 VX6 sing 412 n n C5 H51 VX6 sing 413 n n C5 H52 VX6 sing 414 n n C6 H61 VX6 sing 415 n n C6 H62 VX6 sing 416 n n C7 H71 VX6 sing 417 n n C7 H72 VX6 sing 418 n n C7 H73 VX6 sing 419 n n C8 C9 VX6 sing 420 n y C8 N13 VX6 doub 421 n y C9 C10 VX6 doub 422 n y C9 H9 VX6 sing 423 n n C10 N11 VX6 sing 424 n y C10 N14 VX6 sing 425 n n N11 C12 VX6 doub 426 n y C12 N13 VX6 sing 427 n y C12 S23 VX6 sing 428 n n N14 C15 VX6 sing 429 n n N14 H14 VX6 sing 430 n n C15 C17 VX6 doub 431 n y C15 N20 VX6 sing 432 n y C17 C18 VX6 sing 433 n y C17 H17 VX6 sing 434 n n C18 N19 VX6 doub 435 n y C18 C21 VX6 sing 436 n n N19 N20 VX6 sing 437 n y N20 H20 VX6 sing 438 n n C21 H211 VX6 sing 439 n n C21 H212 VX6 sing 440 n n C21 H213 VX6 sing 441 n n S23 C24 VX6 sing 442 n n C24 C25 VX6 sing 443 n y C24 C29 VX6 doub 444 n y C25 C26 VX6 doub 445 n y C25 H25 VX6 sing 446 n n C26 C27 VX6 sing 447 n y C26 H26 VX6 sing 448 n n C27 C28 VX6 doub 449 n y C27 N30 VX6 sing 450 n n C28 C29 VX6 sing 451 n y C28 H28 VX6 sing 452 n n C29 H29 VX6 sing 453 n n N30 C31 VX6 sing 454 n n N30 H30 VX6 sing 455 n n C31 O32 VX6 doub 456 n n C31 C33 VX6 sing 457 n n C33 C34 VX6 sing 458 n n C33 C35 VX6 sing 459 n n C33 H33 VX6 sing 460 n n C34 C35 VX6 sing 461 n n C34 H341 VX6 sing 462 n n C34 H342 VX6 sing 463 n n C35 H351 VX6 sing 464 n n C35 H352 VX6 sing 465 n n # _atom_sites.entry_id 3E5A _atom_sites.fract_transf_matrix[1][1] 0.01147 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011224 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VX6 A 1 500 500 VX6 VX6 . D 4 SO4 A 1 600 600 SO4 SO4 . E 5 HOH A 1 1 1 HOH HOH . E 5 HOH A 2 2 2 HOH HOH . E 5 HOH A 3 3 3 HOH HOH . E 5 HOH A 4 4 4 HOH HOH . E 5 HOH A 5 5 5 HOH HOH . E 5 HOH A 6 6 6 HOH HOH . E 5 HOH A 7 7 7 HOH HOH . E 5 HOH A 8 9 9 HOH HOH . E 5 HOH A 9 10 10 HOH HOH . E 5 HOH A 10 11 11 HOH HOH . E 5 HOH A 11 12 12 HOH HOH . E 5 HOH A 12 13 13 HOH HOH . E 5 HOH A 13 14 14 HOH HOH . E 5 HOH A 14 15 15 HOH HOH . E 5 HOH A 15 16 16 HOH HOH . E 5 HOH A 16 17 17 HOH HOH . E 5 HOH A 17 18 18 HOH HOH . E 5 HOH A 18 19 19 HOH HOH . E 5 HOH A 19 20 20 HOH HOH . E 5 HOH A 20 21 21 HOH HOH . E 5 HOH A 21 22 22 HOH HOH . E 5 HOH A 22 24 24 HOH HOH . E 5 HOH A 23 25 25 HOH HOH . E 5 HOH A 24 26 26 HOH HOH . E 5 HOH A 25 27 27 HOH HOH . E 5 HOH A 26 28 28 HOH HOH . E 5 HOH A 27 29 29 HOH HOH . E 5 HOH A 28 30 30 HOH HOH . E 5 HOH A 29 31 31 HOH HOH . E 5 HOH A 30 32 32 HOH HOH . E 5 HOH A 31 33 33 HOH HOH . E 5 HOH A 32 34 34 HOH HOH . E 5 HOH A 33 35 35 HOH HOH . E 5 HOH A 34 36 36 HOH HOH . E 5 HOH A 35 37 37 HOH HOH . E 5 HOH A 36 38 38 HOH HOH . E 5 HOH A 37 39 39 HOH HOH . E 5 HOH A 38 40 40 HOH HOH . E 5 HOH A 39 41 41 HOH HOH . E 5 HOH A 40 42 42 HOH HOH . E 5 HOH A 41 43 43 HOH HOH . E 5 HOH A 42 44 44 HOH HOH . E 5 HOH A 43 45 45 HOH HOH . E 5 HOH A 44 46 46 HOH HOH . E 5 HOH A 45 47 47 HOH HOH . E 5 HOH A 46 49 49 HOH HOH . E 5 HOH A 47 50 50 HOH HOH . E 5 HOH A 48 51 51 HOH HOH . E 5 HOH A 49 52 52 HOH HOH . E 5 HOH A 50 53 53 HOH HOH . E 5 HOH A 51 54 54 HOH HOH . E 5 HOH A 52 55 55 HOH HOH . E 5 HOH A 53 56 56 HOH HOH . E 5 HOH A 54 57 57 HOH HOH . E 5 HOH A 55 58 58 HOH HOH . F 5 HOH B 1 44 8 HOH HOH . F 5 HOH B 2 45 23 HOH HOH . F 5 HOH B 3 46 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 VX6 . . . C 3 19.62 30.12 22.355 1 52.5 ? N1 VX6 500 A 1 HETATM 2 C C2 VX6 . . . C 3 19.783 30.582 20.984 1 52.99 ? C2 VX6 500 A 1 HETATM 3 C C3 VX6 . . . C 3 20.927 29.979 20.199 1 54.05 ? C3 VX6 500 A 1 HETATM 4 N N4 VX6 . . . C 3 22.099 29.731 21 1 51.88 ? N4 VX6 500 A 1 HETATM 5 C C5 VX6 . . . C 3 22.071 29.512 22.445 1 52.04 ? C5 VX6 500 A 1 HETATM 6 C C6 VX6 . . . C 3 20.647 29.22 22.903 1 52.88 ? C6 VX6 500 A 1 HETATM 7 C C7 VX6 . . . C 3 18.372 29.394 22.379 1 53.24 ? C7 VX6 500 A 1 HETATM 8 C C8 VX6 . . . C 3 23.165 29.172 20.301 1 52.91 ? C8 VX6 500 A 1 HETATM 9 C C9 VX6 . . . C 3 23.159 29.209 18.925 1 53.42 ? C9 VX6 500 A 1 HETATM 10 C C10 VX6 . . . C 3 24.254 28.658 18.281 1 54.26 ? C10 VX6 500 A 1 HETATM 11 N N11 VX6 . . . C 3 25.272 28.106 18.974 1 54.07 ? N11 VX6 500 A 1 HETATM 12 C C12 VX6 . . . C 3 25.198 28.108 20.302 1 50.54 ? C12 VX6 500 A 1 HETATM 13 N N13 VX6 . . . C 3 24.192 28.637 20.977 1 51.89 ? N13 VX6 500 A 1 HETATM 14 N N14 VX6 . . . C 3 24.224 28.718 16.859 1 52.35 ? N14 VX6 500 A 1 HETATM 15 C C15 VX6 . . . C 3 25.196 28.409 15.944 1 51.98 ? C15 VX6 500 A 1 HETATM 16 C C17 VX6 . . . C 3 26.466 27.86 16.261 1 48.14 ? C17 VX6 500 A 1 HETATM 17 C C18 VX6 . . . C 3 27.114 27.686 15.058 1 50.42 ? C18 VX6 500 A 1 HETATM 18 N N19 VX6 . . . C 3 26.248 28.131 14.096 1 51.52 ? N19 VX6 500 A 1 HETATM 19 N N20 VX6 . . . C 3 25.083 28.562 14.612 1 50.36 ? N20 VX6 500 A 1 HETATM 20 C C21 VX6 . . . C 3 28.442 27.146 14.724 1 50.4 ? C21 VX6 500 A 1 HETATM 21 S S23 VX6 . . . C 3 26.528 27.432 21.28 1 54.91 ? S23 VX6 500 A 1 HETATM 22 C C24 VX6 . . . C 3 27.263 26.342 20.103 1 53.68 ? C24 VX6 500 A 1 HETATM 23 C C25 VX6 . . . C 3 28.375 26.752 19.403 1 53.65 ? C25 VX6 500 A 1 HETATM 24 C C26 VX6 . . . C 3 28.935 25.923 18.464 1 52.03 ? C26 VX6 500 A 1 HETATM 25 C C27 VX6 . . . C 3 28.387 24.683 18.243 1 51.79 ? C27 VX6 500 A 1 HETATM 26 C C28 VX6 . . . C 3 27.287 24.259 18.959 1 52.8 ? C28 VX6 500 A 1 HETATM 27 C C29 VX6 . . . C 3 26.725 25.094 19.891 1 52.62 ? C29 VX6 500 A 1 HETATM 28 N N30 VX6 . . . C 3 28.916 23.794 17.297 1 51.65 ? N30 VX6 500 A 1 HETATM 29 C C31 VX6 . . . C 3 30.1 23.953 16.6 1 53.74 ? C31 VX6 500 A 1 HETATM 30 O O32 VX6 . . . C 3 30.999 24.802 16.742 1 52.6 ? O32 VX6 500 A 1 HETATM 31 C C33 VX6 . . . C 3 30.204 22.902 15.568 1 50.59 ? C33 VX6 500 A 1 HETATM 32 C C34 VX6 . . . C 3 31.031 23.219 14.361 1 50.77 ? C34 VX6 500 A 1 HETATM 33 C C35 VX6 . . . C 3 31.533 22.231 15.376 1 51.25 ? C35 VX6 500 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #