data_3E5K
#
_model_server_result.job_id            fcG1T42ZXdd5Zwk9WoSmvg 
_model_server_result.datetime_utc      '2024-10-19 11:24:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3e5k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    3E5K 
#
_exptl.entry_id    3E5K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              144.173 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-PHENYL-1H-IMIDAZOLE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3E5K 
_cell.length_a            143.725 
_cell.length_b            143.725 
_cell.length_c            70.943 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3E5K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -47.295333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 348 A CYS 348 1_555 B FE HEM . A HEM 1408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc2 C N3 PIM . A PIM 501 1_555 B FE HEM . A HEM 1408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? 
#
_chem_comp.formula           'C9 H8 N2' 
_chem_comp.formula_weight    144.173 
_chem_comp.id                PIM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-PHENYL-1H-IMIDAZOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PIM sing 342 n y 
N1 C5 PIM sing 343 n y 
N1 HN1 PIM sing 344 n n 
C2 N3 PIM doub 345 n y 
C2 H2 PIM sing 346 n n 
N3 C4 PIM sing 347 n y 
C4 C5 PIM doub 348 n y 
C4 H4 PIM sing 349 n n 
C5 C6 PIM sing 350 n y 
C6 C7 PIM doub 351 n y 
C6 C11 PIM sing 352 n y 
C7 C8 PIM sing 353 n y 
C7 H7 PIM sing 354 n n 
C8 C9 PIM doub 355 n y 
C8 H8 PIM sing 356 n n 
C9 C10 PIM sing 357 n y 
C9 H9 PIM sing 358 n n 
C10 C11 PIM doub 359 n y 
C10 H10 PIM sing 360 n n 
C11 H11 PIM sing 361 n n 
#
_atom_sites.entry_id                     3E5K 
_atom_sites.fract_transf_matrix[1][1]    0.006958 
_atom_sites.fract_transf_matrix[1][2]    0.004017 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008034 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014096 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 1408 1408 HEM HEM . 
C 3 PIM A 1 501 501 PIM PIM . 
D 4 HOH A 1 1409 1 HOH HOH . 
D 4 HOH A 2 1410 2 HOH HOH . 
D 4 HOH A 3 1411 3 HOH HOH . 
D 4 HOH A 4 1412 4 HOH HOH . 
D 4 HOH A 5 1413 5 HOH HOH . 
D 4 HOH A 6 1414 6 HOH HOH . 
D 4 HOH A 7 1415 7 HOH HOH . 
D 4 HOH A 8 1416 8 HOH HOH . 
D 4 HOH A 9 1417 9 HOH HOH . 
D 4 HOH A 10 1418 10 HOH HOH . 
D 4 HOH A 11 1419 11 HOH HOH . 
D 4 HOH A 12 1420 12 HOH HOH . 
D 4 HOH A 13 1421 13 HOH HOH . 
D 4 HOH A 14 1422 14 HOH HOH . 
D 4 HOH A 15 1423 15 HOH HOH . 
D 4 HOH A 16 1424 16 HOH HOH . 
D 4 HOH A 17 1425 17 HOH HOH . 
D 4 HOH A 18 1426 18 HOH HOH . 
D 4 HOH A 19 1427 19 HOH HOH . 
D 4 HOH A 20 1428 20 HOH HOH . 
D 4 HOH A 21 1429 21 HOH HOH . 
D 4 HOH A 22 1430 22 HOH HOH . 
D 4 HOH A 23 1431 23 HOH HOH . 
D 4 HOH A 24 1432 24 HOH HOH . 
D 4 HOH A 25 1433 25 HOH HOH . 
D 4 HOH A 26 1434 26 HOH HOH . 
D 4 HOH A 27 1435 27 HOH HOH . 
D 4 HOH A 28 1436 28 HOH HOH . 
D 4 HOH A 29 1437 29 HOH HOH . 
D 4 HOH A 30 1438 30 HOH HOH . 
D 4 HOH A 31 1439 31 HOH HOH . 
D 4 HOH A 32 1440 32 HOH HOH . 
D 4 HOH A 33 1441 33 HOH HOH . 
D 4 HOH A 34 1442 34 HOH HOH . 
D 4 HOH A 35 1443 35 HOH HOH . 
D 4 HOH A 36 1444 36 HOH HOH . 
D 4 HOH A 37 1445 37 HOH HOH . 
D 4 HOH A 38 1446 38 HOH HOH . 
D 4 HOH A 39 1447 39 HOH HOH . 
D 4 HOH A 40 1448 40 HOH HOH . 
D 4 HOH A 41 1449 41 HOH HOH . 
D 4 HOH A 42 1450 42 HOH HOH . 
D 4 HOH A 43 1451 43 HOH HOH . 
D 4 HOH A 44 1452 44 HOH HOH . 
D 4 HOH A 45 1453 45 HOH HOH . 
D 4 HOH A 46 1454 46 HOH HOH . 
D 4 HOH A 47 1455 47 HOH HOH . 
D 4 HOH A 48 1456 48 HOH HOH . 
D 4 HOH A 49 1457 49 HOH HOH . 
D 4 HOH A 50 1458 50 HOH HOH . 
D 4 HOH A 51 1459 51 HOH HOH . 
D 4 HOH A 52 1460 52 HOH HOH . 
D 4 HOH A 53 1461 53 HOH HOH . 
D 4 HOH A 54 1462 54 HOH HOH . 
D 4 HOH A 55 1463 55 HOH HOH . 
D 4 HOH A 56 1464 56 HOH HOH . 
D 4 HOH A 57 1465 57 HOH HOH . 
D 4 HOH A 58 1466 58 HOH HOH . 
D 4 HOH A 59 1467 59 HOH HOH . 
D 4 HOH A 60 1468 60 HOH HOH . 
D 4 HOH A 61 1469 61 HOH HOH . 
D 4 HOH A 62 1470 62 HOH HOH . 
D 4 HOH A 63 1471 63 HOH HOH . 
D 4 HOH A 64 1472 64 HOH HOH . 
D 4 HOH A 65 1473 65 HOH HOH . 
D 4 HOH A 66 1474 66 HOH HOH . 
D 4 HOH A 67 1475 67 HOH HOH . 
D 4 HOH A 68 1476 68 HOH HOH . 
D 4 HOH A 69 1477 69 HOH HOH . 
D 4 HOH A 70 1478 70 HOH HOH . 
D 4 HOH A 71 1479 71 HOH HOH . 
D 4 HOH A 72 1480 72 HOH HOH . 
D 4 HOH A 73 1481 73 HOH HOH . 
D 4 HOH A 74 1482 74 HOH HOH . 
D 4 HOH A 75 1483 75 HOH HOH . 
D 4 HOH A 76 1484 76 HOH HOH . 
D 4 HOH A 77 1485 77 HOH HOH . 
D 4 HOH A 78 1486 78 HOH HOH . 
D 4 HOH A 79 1487 79 HOH HOH . 
D 4 HOH A 80 1488 80 HOH HOH . 
D 4 HOH A 81 1489 81 HOH HOH . 
D 4 HOH A 82 1490 82 HOH HOH . 
D 4 HOH A 83 1491 83 HOH HOH . 
D 4 HOH A 84 1492 84 HOH HOH . 
D 4 HOH A 85 1493 85 HOH HOH . 
D 4 HOH A 86 1494 86 HOH HOH . 
D 4 HOH A 87 1495 87 HOH HOH . 
D 4 HOH A 88 1496 88 HOH HOH . 
D 4 HOH A 89 1497 89 HOH HOH . 
D 4 HOH A 90 1498 90 HOH HOH . 
D 4 HOH A 91 1499 91 HOH HOH . 
D 4 HOH A 92 1500 92 HOH HOH . 
D 4 HOH A 93 1501 93 HOH HOH . 
D 4 HOH A 94 1502 94 HOH HOH . 
D 4 HOH A 95 1503 95 HOH HOH . 
D 4 HOH A 96 1504 96 HOH HOH . 
D 4 HOH A 97 1505 97 HOH HOH . 
D 4 HOH A 98 1506 98 HOH HOH . 
D 4 HOH A 99 1507 99 HOH HOH . 
D 4 HOH A 100 1508 100 HOH HOH . 
D 4 HOH A 101 1509 101 HOH HOH . 
D 4 HOH A 102 1510 102 HOH HOH . 
D 4 HOH A 103 1511 103 HOH HOH . 
D 4 HOH A 104 1512 104 HOH HOH . 
D 4 HOH A 105 1513 105 HOH HOH . 
D 4 HOH A 106 1514 106 HOH HOH . 
D 4 HOH A 107 1515 107 HOH HOH . 
D 4 HOH A 108 1516 108 HOH HOH . 
D 4 HOH A 109 1517 109 HOH HOH . 
D 4 HOH A 110 1518 110 HOH HOH . 
D 4 HOH A 111 1519 111 HOH HOH . 
D 4 HOH A 112 1520 112 HOH HOH . 
D 4 HOH A 113 1521 113 HOH HOH . 
D 4 HOH A 114 1522 114 HOH HOH . 
D 4 HOH A 115 1523 115 HOH HOH . 
D 4 HOH A 116 1524 116 HOH HOH . 
D 4 HOH A 117 1525 117 HOH HOH . 
D 4 HOH A 118 1526 118 HOH HOH . 
D 4 HOH A 119 1527 119 HOH HOH . 
D 4 HOH A 120 1528 120 HOH HOH . 
D 4 HOH A 121 1529 121 HOH HOH . 
D 4 HOH A 122 1530 122 HOH HOH . 
D 4 HOH A 123 1531 123 HOH HOH . 
D 4 HOH A 124 1532 124 HOH HOH . 
D 4 HOH A 125 1533 125 HOH HOH . 
D 4 HOH A 126 1534 126 HOH HOH . 
D 4 HOH A 127 1535 127 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PIM . . . C 3 -53.92 54.247 -23.583 1 44.14 ? N1 PIM 501 A 1 
HETATM 2 C C2 PIM . . . C 3 -54.726 53.317 -24.107 1 46.67 ? C2 PIM 501 A 1 
HETATM 3 N N3 PIM . . . C 3 -54.43 53.123 -25.39 1 42.48 ? N3 PIM 501 A 1 
HETATM 4 C C4 PIM . . . C 3 -53.386 53.912 -25.632 1 46.94 ? C4 PIM 501 A 1 
HETATM 5 C C5 PIM . . . C 3 -53.069 54.62 -24.54 1 47.47 ? C5 PIM 501 A 1 
HETATM 6 C C6 PIM . . . C 3 -52.039 55.556 -24.412 1 38.74 ? C6 PIM 501 A 1 
HETATM 7 C C7 PIM . . . C 3 -52.134 56.642 -23.544 1 45.74 ? C7 PIM 501 A 1 
HETATM 8 C C8 PIM . . . C 3 -51.1 57.57 -23.394 1 43.52 ? C8 PIM 501 A 1 
HETATM 9 C C9 PIM . . . C 3 -49.959 57.493 -24.191 1 43.62 ? C9 PIM 501 A 1 
HETATM 10 C C10 PIM . . . C 3 -49.823 56.39 -25.036 1 46.1 ? C10 PIM 501 A 1 
HETATM 11 C C11 PIM . . . C 3 -50.847 55.443 -25.128 1 49.41 ? C11 PIM 501 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           11 
#