data_3E5P # _model_server_result.job_id Rn3SQEhpqWiUYylYWuceWw _model_server_result.datetime_utc '2024-10-31 09:29:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e5p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 3E5P # _exptl.entry_id 3E5P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.488 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NONAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3E5P _cell.length_a 94.634 _cell.length_b 156.516 _cell.length_c 147.878 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E5P _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I,J,K,L,N 1 1 B,G,H,M 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 40 A LYS 40 1_555 D O4A PLP . A PLP 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? covale ? covale2 A CE LYS 40 A LYS 40 1_555 D O4A PLP . A PLP 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 0.942 ? covale ? covale3 B NZ LYS 40 B LYS 40 1_555 G O4A PLP . B PLP 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 0.677 ? covale ? covale4 B CE LYS 40 B LYS 40 1_555 G O4A PLP . B PLP 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 0.997 ? covale ? covale5 C NZ LYS 40 C LYS 40 1_555 J O4A PLP . C PLP 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.168 ? covale ? covale6 C CE LYS 40 C LYS 40 1_555 J O4A PLP . C PLP 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.058 ? # _chem_comp.formula 'C18 H38 O10' _chem_comp.formula_weight 414.488 _chem_comp.id 2PE _chem_comp.mon_nstd_flag . _chem_comp.name 'NONAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 2PE sing 1 n n O1 HO1 2PE sing 2 n n C2 C3 2PE sing 3 n n C2 H21 2PE sing 4 n n C2 H22 2PE sing 5 n n C3 O4 2PE sing 6 n n C3 H31 2PE sing 7 n n C3 H32 2PE sing 8 n n O4 C5 2PE sing 9 n n C5 C6 2PE sing 10 n n C5 H51 2PE sing 11 n n C5 H52 2PE sing 12 n n C6 O7 2PE sing 13 n n C6 H61 2PE sing 14 n n C6 H62 2PE sing 15 n n O7 C8 2PE sing 16 n n C8 C9 2PE sing 17 n n C8 H81 2PE sing 18 n n C8 H82 2PE sing 19 n n C9 O10 2PE sing 20 n n C9 H91 2PE sing 21 n n C9 H92 2PE sing 22 n n O10 C11 2PE sing 23 n n C11 C12 2PE sing 24 n n C11 H111 2PE sing 25 n n C11 H112 2PE sing 26 n n C12 O13 2PE sing 27 n n C12 H121 2PE sing 28 n n C12 H122 2PE sing 29 n n O13 C14 2PE sing 30 n n C14 C15 2PE sing 31 n n C14 H141 2PE sing 32 n n C14 H142 2PE sing 33 n n C15 O16 2PE sing 34 n n C15 H151 2PE sing 35 n n C15 H152 2PE sing 36 n n O16 C17 2PE sing 37 n n C17 C18 2PE sing 38 n n C17 H171 2PE sing 39 n n C17 H172 2PE sing 40 n n C18 O19 2PE sing 41 n n C18 H181 2PE sing 42 n n C18 H182 2PE sing 43 n n O19 C20 2PE sing 44 n n C20 C21 2PE sing 45 n n C20 H201 2PE sing 46 n n C20 H202 2PE sing 47 n n C21 O22 2PE sing 48 n n C21 H211 2PE sing 49 n n C21 H212 2PE sing 50 n n O22 C23 2PE sing 51 n n C23 C24 2PE sing 52 n n C23 H231 2PE sing 53 n n C23 H232 2PE sing 54 n n C24 O25 2PE sing 55 n n C24 H241 2PE sing 56 n n C24 H242 2PE sing 57 n n O25 C26 2PE sing 58 n n C26 C27 2PE sing 59 n n C26 H261 2PE sing 60 n n C26 H262 2PE sing 61 n n C27 O28 2PE sing 62 n n C27 H271 2PE sing 63 n n C27 H272 2PE sing 64 n n O28 HO2 2PE sing 65 n n # _atom_sites.entry_id 3E5P _atom_sites.fract_transf_matrix[1][1] 0.010567 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006762 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PLP A 1 390 390 PLP PLP . E 3 PPI A 1 400 400 PPI PPI . F 4 EPE A 1 430 430 EPE EPE . G 2 PLP B 1 390 390 PLP PLP . H 3 PPI B 1 400 400 PPI PPI . I 5 2PE C 1 401 401 2PE 2PE . J 2 PLP C 1 390 390 PLP PLP . K 3 PPI C 1 400 400 PPI PPI . L 6 HOH A 1 431 431 HOH HOH . L 6 HOH A 2 432 432 HOH HOH . L 6 HOH A 3 433 433 HOH HOH . L 6 HOH A 4 434 434 HOH HOH . L 6 HOH A 5 435 435 HOH HOH . L 6 HOH A 6 436 436 HOH HOH . L 6 HOH A 7 437 437 HOH HOH . L 6 HOH A 8 438 438 HOH HOH . L 6 HOH A 9 439 439 HOH HOH . L 6 HOH A 10 440 440 HOH HOH . L 6 HOH A 11 441 441 HOH HOH . L 6 HOH A 12 442 442 HOH HOH . L 6 HOH A 13 443 443 HOH HOH . L 6 HOH A 14 444 444 HOH HOH . L 6 HOH A 15 445 445 HOH HOH . L 6 HOH A 16 446 446 HOH HOH . L 6 HOH A 17 447 447 HOH HOH . L 6 HOH A 18 448 448 HOH HOH . L 6 HOH A 19 449 449 HOH HOH . L 6 HOH A 20 450 450 HOH HOH . L 6 HOH A 21 451 451 HOH HOH . L 6 HOH A 22 452 452 HOH HOH . L 6 HOH A 23 453 453 HOH HOH . L 6 HOH A 24 454 454 HOH HOH . L 6 HOH A 25 455 455 HOH HOH . L 6 HOH A 26 456 456 HOH HOH . L 6 HOH A 27 457 457 HOH HOH . L 6 HOH A 28 458 458 HOH HOH . L 6 HOH A 29 459 459 HOH HOH . L 6 HOH A 30 460 460 HOH HOH . L 6 HOH A 31 461 461 HOH HOH . L 6 HOH A 32 462 462 HOH HOH . L 6 HOH A 33 463 463 HOH HOH . L 6 HOH A 34 464 464 HOH HOH . L 6 HOH A 35 465 465 HOH HOH . L 6 HOH A 36 466 466 HOH HOH . L 6 HOH A 37 467 467 HOH HOH . L 6 HOH A 38 468 468 HOH HOH . L 6 HOH A 39 469 469 HOH HOH . L 6 HOH A 40 470 470 HOH HOH . L 6 HOH A 41 471 471 HOH HOH . L 6 HOH A 42 472 472 HOH HOH . L 6 HOH A 43 473 473 HOH HOH . L 6 HOH A 44 474 474 HOH HOH . L 6 HOH A 45 475 475 HOH HOH . L 6 HOH A 46 476 476 HOH HOH . L 6 HOH A 47 477 477 HOH HOH . L 6 HOH A 48 478 478 HOH HOH . L 6 HOH A 49 479 479 HOH HOH . L 6 HOH A 50 480 480 HOH HOH . L 6 HOH A 51 481 481 HOH HOH . L 6 HOH A 52 482 482 HOH HOH . L 6 HOH A 53 483 483 HOH HOH . L 6 HOH A 54 484 484 HOH HOH . L 6 HOH A 55 485 485 HOH HOH . L 6 HOH A 56 486 486 HOH HOH . L 6 HOH A 57 487 487 HOH HOH . M 6 HOH B 1 401 401 HOH HOH . M 6 HOH B 2 402 402 HOH HOH . M 6 HOH B 3 403 403 HOH HOH . M 6 HOH B 4 404 404 HOH HOH . M 6 HOH B 5 405 405 HOH HOH . M 6 HOH B 6 406 406 HOH HOH . M 6 HOH B 7 407 407 HOH HOH . M 6 HOH B 8 408 408 HOH HOH . M 6 HOH B 9 409 409 HOH HOH . M 6 HOH B 10 410 410 HOH HOH . M 6 HOH B 11 411 411 HOH HOH . M 6 HOH B 12 412 412 HOH HOH . M 6 HOH B 13 413 413 HOH HOH . M 6 HOH B 14 414 414 HOH HOH . M 6 HOH B 15 415 415 HOH HOH . M 6 HOH B 16 416 416 HOH HOH . M 6 HOH B 17 417 417 HOH HOH . M 6 HOH B 18 418 418 HOH HOH . M 6 HOH B 19 419 419 HOH HOH . M 6 HOH B 20 420 420 HOH HOH . M 6 HOH B 21 421 421 HOH HOH . M 6 HOH B 22 422 422 HOH HOH . M 6 HOH B 23 423 423 HOH HOH . M 6 HOH B 24 424 424 HOH HOH . M 6 HOH B 25 425 425 HOH HOH . M 6 HOH B 26 426 426 HOH HOH . M 6 HOH B 27 427 427 HOH HOH . M 6 HOH B 28 428 428 HOH HOH . M 6 HOH B 29 429 429 HOH HOH . M 6 HOH B 30 430 430 HOH HOH . M 6 HOH B 31 431 431 HOH HOH . M 6 HOH B 32 432 432 HOH HOH . M 6 HOH B 33 433 433 HOH HOH . M 6 HOH B 34 434 434 HOH HOH . M 6 HOH B 35 435 435 HOH HOH . M 6 HOH B 36 436 436 HOH HOH . M 6 HOH B 37 437 437 HOH HOH . M 6 HOH B 38 438 438 HOH HOH . M 6 HOH B 39 439 439 HOH HOH . M 6 HOH B 40 440 440 HOH HOH . M 6 HOH B 41 441 441 HOH HOH . M 6 HOH B 42 442 442 HOH HOH . M 6 HOH B 43 444 444 HOH HOH . M 6 HOH B 44 445 445 HOH HOH . M 6 HOH B 45 446 446 HOH HOH . M 6 HOH B 46 447 447 HOH HOH . M 6 HOH B 47 448 448 HOH HOH . M 6 HOH B 48 449 449 HOH HOH . N 6 HOH C 1 411 411 HOH HOH . N 6 HOH C 2 412 412 HOH HOH . N 6 HOH C 3 413 413 HOH HOH . N 6 HOH C 4 414 414 HOH HOH . N 6 HOH C 5 415 415 HOH HOH . N 6 HOH C 6 416 416 HOH HOH . N 6 HOH C 7 417 417 HOH HOH . N 6 HOH C 8 418 418 HOH HOH . N 6 HOH C 9 419 419 HOH HOH . N 6 HOH C 10 420 420 HOH HOH . N 6 HOH C 11 421 421 HOH HOH . N 6 HOH C 12 422 422 HOH HOH . N 6 HOH C 13 423 423 HOH HOH . N 6 HOH C 14 424 424 HOH HOH . N 6 HOH C 15 425 425 HOH HOH . N 6 HOH C 16 426 426 HOH HOH . N 6 HOH C 17 427 427 HOH HOH . N 6 HOH C 18 428 428 HOH HOH . N 6 HOH C 19 429 429 HOH HOH . N 6 HOH C 20 430 430 HOH HOH . N 6 HOH C 21 431 431 HOH HOH . N 6 HOH C 22 432 432 HOH HOH . N 6 HOH C 23 433 433 HOH HOH . N 6 HOH C 24 434 434 HOH HOH . N 6 HOH C 25 435 435 HOH HOH . N 6 HOH C 26 436 436 HOH HOH . N 6 HOH C 27 437 437 HOH HOH . N 6 HOH C 28 438 438 HOH HOH . N 6 HOH C 29 439 439 HOH HOH . N 6 HOH C 30 440 440 HOH HOH . N 6 HOH C 31 441 441 HOH HOH . N 6 HOH C 32 442 442 HOH HOH . N 6 HOH C 33 443 443 HOH HOH . N 6 HOH C 34 444 444 HOH HOH . N 6 HOH C 35 445 445 HOH HOH . N 6 HOH C 36 446 446 HOH HOH . N 6 HOH C 37 447 447 HOH HOH . N 6 HOH C 38 448 448 HOH HOH . N 6 HOH C 39 450 450 HOH HOH . N 6 HOH C 40 451 451 HOH HOH . N 6 HOH C 41 452 452 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 2PE . . . I 5 19.05 -11.42 -0.118 1 57.25 ? O1 2PE 401 C 1 HETATM 2 C C2 2PE . . . I 5 19.118 -11.819 -1.503 1 57.96 ? C2 2PE 401 C 1 HETATM 3 C C3 2PE . . . I 5 20.589 -11.869 -1.97 1 59.29 ? C3 2PE 401 C 1 HETATM 4 O O4 2PE . . . I 5 20.86 -10.876 -2.97 1 61.24 ? O4 2PE 401 C 1 HETATM 5 C C5 2PE . . . I 5 22.261 -10.614 -2.95 1 62.1 ? C5 2PE 401 C 1 HETATM 6 C C6 2PE . . . I 5 22.707 -10.068 -4.317 1 63.85 ? C6 2PE 401 C 1 HETATM 7 O O7 2PE . . . I 5 22.521 -8.643 -4.43 1 65.25 ? O7 2PE 401 C 1 HETATM 8 C C8 2PE . . . I 5 23.688 -7.948 -4.002 1 65.6 ? C8 2PE 401 C 1 HETATM 9 C C9 2PE . . . I 5 24.171 -6.94 -5.091 1 65.53 ? C9 2PE 401 C 1 HETATM 10 O O10 2PE . . . I 5 23.061 -6.21 -5.673 1 65.56 ? O10 2PE 401 C 1 HETATM 11 C C11 2PE . . . I 5 23.493 -5.277 -6.716 1 65.62 ? C11 2PE 401 C 1 HETATM 12 C C12 2PE . . . I 5 24.226 -5.965 -7.813 1 65.22 ? C12 2PE 401 C 1 HETATM 13 O O13 2PE . . . I 5 23.322 -6.206 -8.893 1 64.85 ? O13 2PE 401 C 1 HETATM 14 C C14 2PE . . . I 5 24.036 -6.808 -9.894 1 65.06 ? C14 2PE 401 C 1 HETATM 15 C C15 2PE . . . I 5 23.173 -7.666 -10.817 1 63.92 ? C15 2PE 401 C 1 HETATM 16 O O16 2PE . . . I 5 22.103 -6.836 -11.262 1 63.05 ? O16 2PE 401 C 1 HETATM 17 C C17 2PE . . . I 5 21.16 -7.505 -12.151 1 63.1 ? C17 2PE 401 C 1 HETATM 18 C C18 2PE . . . I 5 21.122 -9.017 -12.021 1 61.95 ? C18 2PE 401 C 1 HETATM 19 O O19 2PE . . . I 5 20.009 -9.336 -11.189 1 61.19 ? O19 2PE 401 C 1 HETATM 20 C C20 2PE . . . I 5 19.763 -10.753 -11.088 1 61.66 ? C20 2PE 401 C 1 HETATM 21 C C21 2PE . . . I 5 18.246 -10.975 -10.759 1 61.36 ? C21 2PE 401 C 1 HETATM 22 O O22 2PE . . . I 5 17.712 -12.083 -11.545 1 61.82 ? O22 2PE 401 C 1 HETATM 23 C C23 2PE . . . I 5 16.249 -12.053 -11.53 1 61.19 ? C23 2PE 401 C 1 HETATM 24 C C24 2PE . . . I 5 15.688 -12.632 -12.91 1 61.05 ? C24 2PE 401 C 1 HETATM 25 O O25 2PE . . . I 5 15.409 -11.577 -13.892 1 60.8 ? O25 2PE 401 C 1 HETATM 26 C C26 2PE . . . I 5 15.511 -12.027 -15.308 1 60.1 ? C26 2PE 401 C 1 HETATM 27 C C27 2PE . . . I 5 16.873 -11.584 -15.993 1 60.93 ? C27 2PE 401 C 1 HETATM 28 O O28 2PE . . . I 5 16.873 -11.782 -17.457 1 60.47 ? O28 2PE 401 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 28 #