data_3E5P # _model_server_result.job_id OdL3b57a_Qg4x0DRajXgnQ _model_server_result.datetime_utc '2024-10-31 09:31:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e5p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":430}' # _entry.id 3E5P # _exptl.entry_id 3E5P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3E5P _cell.length_a 94.634 _cell.length_b 156.516 _cell.length_c 147.878 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E5P _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I,J,K,L,N 1 1 B,G,H,M 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 40 A LYS 40 1_555 D O4A PLP . A PLP 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? covale ? covale2 A CE LYS 40 A LYS 40 1_555 D O4A PLP . A PLP 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 0.942 ? covale ? covale3 B NZ LYS 40 B LYS 40 1_555 G O4A PLP . B PLP 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 0.677 ? covale ? covale4 B CE LYS 40 B LYS 40 1_555 G O4A PLP . B PLP 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 0.997 ? covale ? covale5 C NZ LYS 40 C LYS 40 1_555 J O4A PLP . C PLP 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.168 ? covale ? covale6 C CE LYS 40 C LYS 40 1_555 J O4A PLP . C PLP 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.058 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 148 n n N1 C6 EPE sing 149 n n N1 C9 EPE sing 150 n n C2 C3 EPE sing 151 n n C2 H21 EPE sing 152 n n C2 H22 EPE sing 153 n n C3 N4 EPE sing 154 n n C3 H31 EPE sing 155 n n C3 H32 EPE sing 156 n n N4 C5 EPE sing 157 n n N4 C7 EPE sing 158 n n C5 C6 EPE sing 159 n n C5 H51 EPE sing 160 n n C5 H52 EPE sing 161 n n C6 H61 EPE sing 162 n n C6 H62 EPE sing 163 n n C7 C8 EPE sing 164 n n C7 H71 EPE sing 165 n n C7 H72 EPE sing 166 n n C8 O8 EPE sing 167 n n C8 H81 EPE sing 168 n n C8 H82 EPE sing 169 n n O8 HO8 EPE sing 170 n n C9 C10 EPE sing 171 n n C9 H91 EPE sing 172 n n C9 H92 EPE sing 173 n n C10 S EPE sing 174 n n C10 H101 EPE sing 175 n n C10 H102 EPE sing 176 n n S O1S EPE doub 177 n n S O2S EPE doub 178 n n S O3S EPE sing 179 n n O3S HOS3 EPE sing 180 n n # _atom_sites.entry_id 3E5P _atom_sites.fract_transf_matrix[1][1] 0.010567 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006762 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PLP A 1 390 390 PLP PLP . E 3 PPI A 1 400 400 PPI PPI . F 4 EPE A 1 430 430 EPE EPE . G 2 PLP B 1 390 390 PLP PLP . H 3 PPI B 1 400 400 PPI PPI . I 5 2PE C 1 401 401 2PE 2PE . J 2 PLP C 1 390 390 PLP PLP . K 3 PPI C 1 400 400 PPI PPI . L 6 HOH A 1 431 431 HOH HOH . L 6 HOH A 2 432 432 HOH HOH . L 6 HOH A 3 433 433 HOH HOH . L 6 HOH A 4 434 434 HOH HOH . L 6 HOH A 5 435 435 HOH HOH . L 6 HOH A 6 436 436 HOH HOH . L 6 HOH A 7 437 437 HOH HOH . L 6 HOH A 8 438 438 HOH HOH . L 6 HOH A 9 439 439 HOH HOH . L 6 HOH A 10 440 440 HOH HOH . L 6 HOH A 11 441 441 HOH HOH . L 6 HOH A 12 442 442 HOH HOH . L 6 HOH A 13 443 443 HOH HOH . L 6 HOH A 14 444 444 HOH HOH . L 6 HOH A 15 445 445 HOH HOH . L 6 HOH A 16 446 446 HOH HOH . L 6 HOH A 17 447 447 HOH HOH . L 6 HOH A 18 448 448 HOH HOH . L 6 HOH A 19 449 449 HOH HOH . L 6 HOH A 20 450 450 HOH HOH . L 6 HOH A 21 451 451 HOH HOH . L 6 HOH A 22 452 452 HOH HOH . L 6 HOH A 23 453 453 HOH HOH . L 6 HOH A 24 454 454 HOH HOH . L 6 HOH A 25 455 455 HOH HOH . L 6 HOH A 26 456 456 HOH HOH . L 6 HOH A 27 457 457 HOH HOH . L 6 HOH A 28 458 458 HOH HOH . L 6 HOH A 29 459 459 HOH HOH . L 6 HOH A 30 460 460 HOH HOH . L 6 HOH A 31 461 461 HOH HOH . L 6 HOH A 32 462 462 HOH HOH . L 6 HOH A 33 463 463 HOH HOH . L 6 HOH A 34 464 464 HOH HOH . L 6 HOH A 35 465 465 HOH HOH . L 6 HOH A 36 466 466 HOH HOH . L 6 HOH A 37 467 467 HOH HOH . L 6 HOH A 38 468 468 HOH HOH . L 6 HOH A 39 469 469 HOH HOH . L 6 HOH A 40 470 470 HOH HOH . L 6 HOH A 41 471 471 HOH HOH . L 6 HOH A 42 472 472 HOH HOH . L 6 HOH A 43 473 473 HOH HOH . L 6 HOH A 44 474 474 HOH HOH . L 6 HOH A 45 475 475 HOH HOH . L 6 HOH A 46 476 476 HOH HOH . L 6 HOH A 47 477 477 HOH HOH . L 6 HOH A 48 478 478 HOH HOH . L 6 HOH A 49 479 479 HOH HOH . L 6 HOH A 50 480 480 HOH HOH . L 6 HOH A 51 481 481 HOH HOH . L 6 HOH A 52 482 482 HOH HOH . L 6 HOH A 53 483 483 HOH HOH . L 6 HOH A 54 484 484 HOH HOH . L 6 HOH A 55 485 485 HOH HOH . L 6 HOH A 56 486 486 HOH HOH . L 6 HOH A 57 487 487 HOH HOH . M 6 HOH B 1 401 401 HOH HOH . M 6 HOH B 2 402 402 HOH HOH . M 6 HOH B 3 403 403 HOH HOH . M 6 HOH B 4 404 404 HOH HOH . M 6 HOH B 5 405 405 HOH HOH . M 6 HOH B 6 406 406 HOH HOH . M 6 HOH B 7 407 407 HOH HOH . M 6 HOH B 8 408 408 HOH HOH . M 6 HOH B 9 409 409 HOH HOH . M 6 HOH B 10 410 410 HOH HOH . M 6 HOH B 11 411 411 HOH HOH . M 6 HOH B 12 412 412 HOH HOH . M 6 HOH B 13 413 413 HOH HOH . M 6 HOH B 14 414 414 HOH HOH . M 6 HOH B 15 415 415 HOH HOH . M 6 HOH B 16 416 416 HOH HOH . M 6 HOH B 17 417 417 HOH HOH . M 6 HOH B 18 418 418 HOH HOH . M 6 HOH B 19 419 419 HOH HOH . M 6 HOH B 20 420 420 HOH HOH . M 6 HOH B 21 421 421 HOH HOH . M 6 HOH B 22 422 422 HOH HOH . M 6 HOH B 23 423 423 HOH HOH . M 6 HOH B 24 424 424 HOH HOH . M 6 HOH B 25 425 425 HOH HOH . M 6 HOH B 26 426 426 HOH HOH . M 6 HOH B 27 427 427 HOH HOH . M 6 HOH B 28 428 428 HOH HOH . M 6 HOH B 29 429 429 HOH HOH . M 6 HOH B 30 430 430 HOH HOH . M 6 HOH B 31 431 431 HOH HOH . M 6 HOH B 32 432 432 HOH HOH . M 6 HOH B 33 433 433 HOH HOH . M 6 HOH B 34 434 434 HOH HOH . M 6 HOH B 35 435 435 HOH HOH . M 6 HOH B 36 436 436 HOH HOH . M 6 HOH B 37 437 437 HOH HOH . M 6 HOH B 38 438 438 HOH HOH . M 6 HOH B 39 439 439 HOH HOH . M 6 HOH B 40 440 440 HOH HOH . M 6 HOH B 41 441 441 HOH HOH . M 6 HOH B 42 442 442 HOH HOH . M 6 HOH B 43 444 444 HOH HOH . M 6 HOH B 44 445 445 HOH HOH . M 6 HOH B 45 446 446 HOH HOH . M 6 HOH B 46 447 447 HOH HOH . M 6 HOH B 47 448 448 HOH HOH . M 6 HOH B 48 449 449 HOH HOH . N 6 HOH C 1 411 411 HOH HOH . N 6 HOH C 2 412 412 HOH HOH . N 6 HOH C 3 413 413 HOH HOH . N 6 HOH C 4 414 414 HOH HOH . N 6 HOH C 5 415 415 HOH HOH . N 6 HOH C 6 416 416 HOH HOH . N 6 HOH C 7 417 417 HOH HOH . N 6 HOH C 8 418 418 HOH HOH . N 6 HOH C 9 419 419 HOH HOH . N 6 HOH C 10 420 420 HOH HOH . N 6 HOH C 11 421 421 HOH HOH . N 6 HOH C 12 422 422 HOH HOH . N 6 HOH C 13 423 423 HOH HOH . N 6 HOH C 14 424 424 HOH HOH . N 6 HOH C 15 425 425 HOH HOH . N 6 HOH C 16 426 426 HOH HOH . N 6 HOH C 17 427 427 HOH HOH . N 6 HOH C 18 428 428 HOH HOH . N 6 HOH C 19 429 429 HOH HOH . N 6 HOH C 20 430 430 HOH HOH . N 6 HOH C 21 431 431 HOH HOH . N 6 HOH C 22 432 432 HOH HOH . N 6 HOH C 23 433 433 HOH HOH . N 6 HOH C 24 434 434 HOH HOH . N 6 HOH C 25 435 435 HOH HOH . N 6 HOH C 26 436 436 HOH HOH . N 6 HOH C 27 437 437 HOH HOH . N 6 HOH C 28 438 438 HOH HOH . N 6 HOH C 29 439 439 HOH HOH . N 6 HOH C 30 440 440 HOH HOH . N 6 HOH C 31 441 441 HOH HOH . N 6 HOH C 32 442 442 HOH HOH . N 6 HOH C 33 443 443 HOH HOH . N 6 HOH C 34 444 444 HOH HOH . N 6 HOH C 35 445 445 HOH HOH . N 6 HOH C 36 446 446 HOH HOH . N 6 HOH C 37 447 447 HOH HOH . N 6 HOH C 38 448 448 HOH HOH . N 6 HOH C 39 450 450 HOH HOH . N 6 HOH C 40 451 451 HOH HOH . N 6 HOH C 41 452 452 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . F 4 24.444 -11.41 4.861 1 49.18 ? N1 EPE 430 A 1 HETATM 2 C C2 EPE . . . F 4 23.352 -10.575 4.672 1 48.71 ? C2 EPE 430 A 1 HETATM 3 C C3 EPE . . . F 4 22.062 -11.072 5.212 1 47.18 ? C3 EPE 430 A 1 HETATM 4 N N4 EPE . . . F 4 22.015 -12.471 5.077 1 46.5 ? N4 EPE 430 A 1 HETATM 5 C C5 EPE . . . F 4 23.195 -13.102 5.127 1 44.43 ? C5 EPE 430 A 1 HETATM 6 C C6 EPE . . . F 4 24.174 -12.644 4.178 1 46.43 ? C6 EPE 430 A 1 HETATM 7 C C7 EPE . . . F 4 20.949 -13.046 4.332 1 44.67 ? C7 EPE 430 A 1 HETATM 8 C C8 EPE . . . F 4 19.983 -12.076 3.684 1 43.22 ? C8 EPE 430 A 1 HETATM 9 O O8 EPE . . . F 4 18.948 -12.798 3.247 1 41.5 ? O8 EPE 430 A 1 HETATM 10 C C9 EPE . . . F 4 25.54 -10.693 4.324 1 50.68 ? C9 EPE 430 A 1 HETATM 11 C C10 EPE . . . F 4 26.259 -9.714 5.19 1 55.63 ? C10 EPE 430 A 1 HETATM 12 S S EPE . . . F 4 27.991 -9.811 4.93 1 61.98 ? S EPE 430 A 1 HETATM 13 O O1S EPE . . . F 4 28.535 -9.777 6.202 1 59.12 ? O1S EPE 430 A 1 HETATM 14 O O2S EPE . . . F 4 28.691 -8.979 4.132 1 59.96 ? O2S EPE 430 A 1 HETATM 15 O O3S EPE . . . F 4 27.817 -10.969 4.187 1 59.67 ? O3S EPE 430 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #