data_3E61
#
_model_server_result.job_id            YoXAc94yDGNBx63NnyI9gg 
_model_server_result.datetime_utc      '2024-10-17 21:44:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3e61 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1}' 
#
_entry.id    3E61 
#
_exptl.entry_id    3E61 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.17 
_cell.angle_gamma         90 
_cell.entry_id            3E61 
_cell.length_a            81.146 
_cell.length_b            106.634 
_cell.length_c            68.183 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3E61 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1,2 
A,B,C,D,E,F 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -25.729261 0 63.142115 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3E61 
_atom_sites.fract_transf_matrix[1][1]    0.012324 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00502 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009378 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015837 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 1 1 GOL GOL . 
D 2 GOL B 1 1 1 GOL GOL . 
E 3 HOH A 1 329 1 HOH HOH . 
E 3 HOH A 2 330 2 HOH HOH . 
E 3 HOH A 3 331 3 HOH HOH . 
E 3 HOH A 4 332 8 HOH HOH . 
E 3 HOH A 5 333 11 HOH HOH . 
E 3 HOH A 6 334 12 HOH HOH . 
E 3 HOH A 7 335 14 HOH HOH . 
E 3 HOH A 8 336 15 HOH HOH . 
E 3 HOH A 9 337 17 HOH HOH . 
E 3 HOH A 10 338 20 HOH HOH . 
E 3 HOH A 11 339 23 HOH HOH . 
E 3 HOH A 12 340 28 HOH HOH . 
E 3 HOH A 13 341 30 HOH HOH . 
E 3 HOH A 14 342 32 HOH HOH . 
E 3 HOH A 15 343 38 HOH HOH . 
E 3 HOH A 16 344 40 HOH HOH . 
E 3 HOH A 17 345 42 HOH HOH . 
E 3 HOH A 18 346 43 HOH HOH . 
E 3 HOH A 19 347 47 HOH HOH . 
E 3 HOH A 20 348 52 HOH HOH . 
E 3 HOH A 21 349 55 HOH HOH . 
E 3 HOH A 22 350 58 HOH HOH . 
E 3 HOH A 23 351 61 HOH HOH . 
E 3 HOH A 24 352 62 HOH HOH . 
E 3 HOH A 25 353 65 HOH HOH . 
E 3 HOH A 26 354 66 HOH HOH . 
E 3 HOH A 27 355 68 HOH HOH . 
E 3 HOH A 28 356 77 HOH HOH . 
E 3 HOH A 29 357 78 HOH HOH . 
E 3 HOH A 30 358 84 HOH HOH . 
E 3 HOH A 31 359 86 HOH HOH . 
E 3 HOH A 32 360 87 HOH HOH . 
E 3 HOH A 33 361 90 HOH HOH . 
E 3 HOH A 34 362 91 HOH HOH . 
E 3 HOH A 35 363 92 HOH HOH . 
E 3 HOH A 36 364 93 HOH HOH . 
E 3 HOH A 37 365 98 HOH HOH . 
E 3 HOH A 38 366 106 HOH HOH . 
E 3 HOH A 39 367 110 HOH HOH . 
E 3 HOH A 40 368 112 HOH HOH . 
E 3 HOH A 41 369 113 HOH HOH . 
E 3 HOH A 42 370 116 HOH HOH . 
E 3 HOH A 43 371 120 HOH HOH . 
E 3 HOH A 44 372 126 HOH HOH . 
E 3 HOH A 45 373 127 HOH HOH . 
E 3 HOH A 46 374 150 HOH HOH . 
E 3 HOH A 47 375 165 HOH HOH . 
E 3 HOH A 48 376 214 HOH HOH . 
E 3 HOH A 49 377 219 HOH HOH . 
E 3 HOH A 50 378 264 HOH HOH . 
E 3 HOH A 51 379 280 HOH HOH . 
E 3 HOH A 52 380 292 HOH HOH . 
E 3 HOH A 53 381 293 HOH HOH . 
E 3 HOH A 54 382 294 HOH HOH . 
E 3 HOH A 55 383 295 HOH HOH . 
E 3 HOH A 56 384 296 HOH HOH . 
F 3 HOH B 1 329 4 HOH HOH . 
F 3 HOH B 2 330 5 HOH HOH . 
F 3 HOH B 3 331 6 HOH HOH . 
F 3 HOH B 4 332 7 HOH HOH . 
F 3 HOH B 5 333 9 HOH HOH . 
F 3 HOH B 6 334 10 HOH HOH . 
F 3 HOH B 7 335 13 HOH HOH . 
F 3 HOH B 8 336 16 HOH HOH . 
F 3 HOH B 9 337 21 HOH HOH . 
F 3 HOH B 10 338 22 HOH HOH . 
F 3 HOH B 11 339 24 HOH HOH . 
F 3 HOH B 12 340 25 HOH HOH . 
F 3 HOH B 13 341 26 HOH HOH . 
F 3 HOH B 14 342 29 HOH HOH . 
F 3 HOH B 15 343 41 HOH HOH . 
F 3 HOH B 16 344 48 HOH HOH . 
F 3 HOH B 17 345 50 HOH HOH . 
F 3 HOH B 18 346 51 HOH HOH . 
F 3 HOH B 19 347 60 HOH HOH . 
F 3 HOH B 20 348 64 HOH HOH . 
F 3 HOH B 21 349 67 HOH HOH . 
F 3 HOH B 22 350 72 HOH HOH . 
F 3 HOH B 23 351 74 HOH HOH . 
F 3 HOH B 24 352 76 HOH HOH . 
F 3 HOH B 25 353 79 HOH HOH . 
F 3 HOH B 26 354 82 HOH HOH . 
F 3 HOH B 27 355 85 HOH HOH . 
F 3 HOH B 28 356 88 HOH HOH . 
F 3 HOH B 29 357 95 HOH HOH . 
F 3 HOH B 30 358 99 HOH HOH . 
F 3 HOH B 31 359 102 HOH HOH . 
F 3 HOH B 32 360 104 HOH HOH . 
F 3 HOH B 33 361 107 HOH HOH . 
F 3 HOH B 34 362 108 HOH HOH . 
F 3 HOH B 35 363 111 HOH HOH . 
F 3 HOH B 36 364 122 HOH HOH . 
F 3 HOH B 37 365 124 HOH HOH . 
F 3 HOH B 38 366 125 HOH HOH . 
F 3 HOH B 39 367 132 HOH HOH . 
F 3 HOH B 40 368 133 HOH HOH . 
F 3 HOH B 41 369 137 HOH HOH . 
F 3 HOH B 42 370 144 HOH HOH . 
F 3 HOH B 43 371 148 HOH HOH . 
F 3 HOH B 44 372 155 HOH HOH . 
F 3 HOH B 45 373 156 HOH HOH . 
F 3 HOH B 46 374 163 HOH HOH . 
F 3 HOH B 47 375 174 HOH HOH . 
F 3 HOH B 48 376 193 HOH HOH . 
F 3 HOH B 49 377 217 HOH HOH . 
F 3 HOH B 50 378 267 HOH HOH . 
F 3 HOH B 51 379 268 HOH HOH . 
F 3 HOH B 52 380 272 HOH HOH . 
F 3 HOH B 53 381 279 HOH HOH . 
F 3 HOH B 54 382 282 HOH HOH . 
F 3 HOH B 55 383 283 HOH HOH . 
F 3 HOH B 56 384 284 HOH HOH . 
F 3 HOH B 57 385 285 HOH HOH . 
F 3 HOH B 58 386 286 HOH HOH . 
F 3 HOH B 59 387 287 HOH HOH . 
F 3 HOH B 60 388 288 HOH HOH . 
F 3 HOH B 61 389 289 HOH HOH . 
F 3 HOH B 62 390 290 HOH HOH . 
F 3 HOH B 63 391 291 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 2 4.538 -11.52 51.27 1 39.4 ? C1 GOL 1 B 1 
HETATM 2 O O1 GOL . . . D 2 5.399 -10.817 50.362 1 30.26 ? O1 GOL 1 B 1 
HETATM 3 C C2 GOL . . . D 2 4.373 -12.969 50.761 1 40.75 ? C2 GOL 1 B 1 
HETATM 4 O O2 GOL . . . D 2 5.604 -13.478 50.275 1 37.99 ? O2 GOL 1 B 1 
HETATM 5 C C3 GOL . . . D 2 3.803 -13.894 51.839 1 43.11 ? C3 GOL 1 B 1 
HETATM 6 O O3 GOL . . . D 2 3.273 -15.081 51.243 1 41.23 ? O3 GOL 1 B 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#