data_3E65 # _model_server_result.job_id j6O69_uplEzrIoMwQJsSIw _model_server_result.datetime_utc '2024-11-13 18:41:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e65 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":907}' # _entry.id 3E65 # _exptl.entry_id 3E65 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 367.42 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "1-[4-(AMINOMETHYL)BENZOYL]-5'-FLUORO-1'H-SPIRO[PIPERIDINE-4,2'-QUINAZOLIN]-4'-AMINE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3E65 _cell.length_a 213.935 _cell.length_b 213.935 _cell.length_c 117.025 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E65 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1,2 B,F,G,H,J 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 213.935 0 58.5125 3 'crystal symmetry operation' 9_766 -x+2,-x+y+1,-z+5/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 320.9025 185.273145 195.041667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 129 A CYS 194 1_555 C FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc2 B SG CYS 129 B CYS 194 1_555 F FE HEM . B HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? # _chem_comp.formula 'C20 H22 F N5 O' _chem_comp.formula_weight 367.42 _chem_comp.id XXZ _chem_comp.mon_nstd_flag . _chem_comp.name "1-[4-(AMINOMETHYL)BENZOYL]-5'-FLUORO-1'H-SPIRO[PIPERIDINE-4,2'-QUINAZOLIN]-4'-AMINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms AR-C120011 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C2 XXZ sing 491 n n C2 C3 XXZ sing 492 n y C2 C7 XXZ doub 493 n y C3 C4 XXZ doub 494 n y C3 H3 XXZ sing 495 n n C4 C1 XXZ sing 496 n y C4 H4 XXZ sing 497 n n C1 C6 XXZ doub 498 n y C1 H1 XXZ sing 499 n n C6 C7 XXZ sing 500 n y C6 N1 XXZ sing 501 n n C7 CG XXZ sing 502 n n CG N20 XXZ doub 503 n n CG N21 XXZ sing 504 n n N20 C5 XXZ sing 505 n n N21 H211 XXZ sing 506 n n N21 H212 XXZ sing 507 n n N1 C5 XXZ sing 508 n n N1 HN1 XXZ sing 509 n n C5 C10 XXZ sing 510 n n C5 C14 XXZ sing 511 n n C10 C11 XXZ sing 512 n n C10 H101 XXZ sing 513 n n C10 H102 XXZ sing 514 n n C11 N12 XXZ sing 515 n n C11 H111 XXZ sing 516 n n C11 H112 XXZ sing 517 n n N12 C13 XXZ sing 518 n n N12 C15 XXZ sing 519 n n C13 C14 XXZ sing 520 n n C13 H131 XXZ sing 521 n n C13 H132 XXZ sing 522 n n C14 H141 XXZ sing 523 n n C14 H142 XXZ sing 524 n n C15 O16 XXZ doub 525 n n C15 CZ XXZ sing 526 n n C18 CD2 XXZ sing 527 n y C18 CZ XXZ doub 528 n y C18 H18 XXZ sing 529 n n NH CB XXZ sing 530 n n NH HNH1 XXZ sing 531 n n NH HNH2 XXZ sing 532 n n CB C8 XXZ sing 533 n n CB HB1 XXZ sing 534 n n CB HB2 XXZ sing 535 n n C8 CD1 XXZ sing 536 n y C8 CD2 XXZ doub 537 n y CD1 CE1 XXZ doub 538 n y CD1 HD1 XXZ sing 539 n n CE1 CZ XXZ sing 540 n y CE1 HE1 XXZ sing 541 n n CD2 HD2 XXZ sing 542 n n # _atom_sites.entry_id 3E65 _atom_sites.fract_transf_matrix[1][1] 0.004674 _atom_sites.fract_transf_matrix[1][2] 0.002699 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005397 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 901 901 HEM HEM . D 3 H4B A 1 902 902 H4B H4B . E 4 XXZ A 1 906 906 XXZ XXZ . F 2 HEM B 1 901 901 HEM HEM . G 3 H4B B 1 902 902 H4B H4B . H 4 XXZ B 1 907 907 XXZ XXZ . I 5 HOH A 1 1300 1300 HOH HOH . I 5 HOH A 2 1302 1302 HOH HOH . I 5 HOH A 3 1307 1307 HOH HOH . I 5 HOH A 4 1308 1308 HOH HOH . I 5 HOH A 5 1310 1310 HOH HOH . I 5 HOH A 6 1311 1311 HOH HOH . I 5 HOH A 7 1314 1314 HOH HOH . I 5 HOH A 8 1315 1315 HOH HOH . I 5 HOH A 9 1319 1319 HOH HOH . I 5 HOH A 10 1320 1320 HOH HOH . I 5 HOH A 11 1321 1321 HOH HOH . I 5 HOH A 12 1323 1323 HOH HOH . I 5 HOH A 13 1328 1328 HOH HOH . I 5 HOH A 14 1329 1329 HOH HOH . I 5 HOH A 15 1333 1333 HOH HOH . I 5 HOH A 16 1334 1334 HOH HOH . I 5 HOH A 17 1335 1335 HOH HOH . I 5 HOH A 18 1340 1340 HOH HOH . I 5 HOH A 19 1343 1343 HOH HOH . I 5 HOH A 20 1346 1346 HOH HOH . I 5 HOH A 21 1347 1347 HOH HOH . I 5 HOH A 22 1348 1348 HOH HOH . I 5 HOH A 23 1349 1349 HOH HOH . I 5 HOH A 24 1352 1352 HOH HOH . I 5 HOH A 25 1354 1354 HOH HOH . I 5 HOH A 26 1357 1357 HOH HOH . I 5 HOH A 27 1358 1358 HOH HOH . I 5 HOH A 28 1359 1359 HOH HOH . I 5 HOH A 29 1362 1362 HOH HOH . I 5 HOH A 30 1363 1363 HOH HOH . I 5 HOH A 31 1364 1364 HOH HOH . I 5 HOH A 32 1365 1365 HOH HOH . I 5 HOH A 33 1368 1368 HOH HOH . I 5 HOH A 34 1369 1369 HOH HOH . I 5 HOH A 35 1370 1370 HOH HOH . I 5 HOH A 36 1371 1371 HOH HOH . I 5 HOH A 37 1372 1372 HOH HOH . I 5 HOH A 38 1373 1373 HOH HOH . I 5 HOH A 39 1374 1374 HOH HOH . I 5 HOH A 40 1376 1376 HOH HOH . I 5 HOH A 41 1383 1383 HOH HOH . I 5 HOH A 42 1385 1385 HOH HOH . I 5 HOH A 43 1389 1389 HOH HOH . I 5 HOH A 44 1390 1390 HOH HOH . I 5 HOH A 45 1391 1391 HOH HOH . I 5 HOH A 46 1392 1392 HOH HOH . I 5 HOH A 47 1393 1393 HOH HOH . I 5 HOH A 48 1396 1396 HOH HOH . I 5 HOH A 49 1397 1397 HOH HOH . I 5 HOH A 50 1400 1400 HOH HOH . I 5 HOH A 51 1404 1404 HOH HOH . I 5 HOH A 52 1405 1405 HOH HOH . I 5 HOH A 53 1406 1406 HOH HOH . I 5 HOH A 54 1408 1408 HOH HOH . I 5 HOH A 55 1410 1410 HOH HOH . I 5 HOH A 56 1419 1419 HOH HOH . I 5 HOH A 57 1424 1424 HOH HOH . I 5 HOH A 58 1425 1425 HOH HOH . I 5 HOH A 59 1426 1426 HOH HOH . I 5 HOH A 60 1428 1428 HOH HOH . I 5 HOH A 61 1432 1432 HOH HOH . I 5 HOH A 62 1435 1435 HOH HOH . I 5 HOH A 63 1436 1436 HOH HOH . I 5 HOH A 64 1439 1439 HOH HOH . I 5 HOH A 65 1440 1440 HOH HOH . I 5 HOH A 66 1441 1441 HOH HOH . I 5 HOH A 67 1442 1442 HOH HOH . I 5 HOH A 68 1443 1443 HOH HOH . I 5 HOH A 69 1444 1444 HOH HOH . I 5 HOH A 70 1445 1445 HOH HOH . I 5 HOH A 71 1446 1446 HOH HOH . I 5 HOH A 72 1447 1447 HOH HOH . I 5 HOH A 73 1448 1448 HOH HOH . I 5 HOH A 74 1449 1449 HOH HOH . I 5 HOH A 75 1450 1450 HOH HOH . J 5 HOH B 1 1301 1301 HOH HOH . J 5 HOH B 2 1303 1303 HOH HOH . J 5 HOH B 3 1304 1304 HOH HOH . J 5 HOH B 4 1305 1305 HOH HOH . J 5 HOH B 5 1306 1306 HOH HOH . J 5 HOH B 6 1309 1309 HOH HOH . J 5 HOH B 7 1312 1312 HOH HOH . J 5 HOH B 8 1313 1313 HOH HOH . J 5 HOH B 9 1316 1316 HOH HOH . J 5 HOH B 10 1318 1318 HOH HOH . J 5 HOH B 11 1322 1322 HOH HOH . J 5 HOH B 12 1324 1324 HOH HOH . J 5 HOH B 13 1325 1325 HOH HOH . J 5 HOH B 14 1326 1326 HOH HOH . J 5 HOH B 15 1327 1327 HOH HOH . J 5 HOH B 16 1330 1330 HOH HOH . J 5 HOH B 17 1331 1331 HOH HOH . J 5 HOH B 18 1332 1332 HOH HOH . J 5 HOH B 19 1336 1336 HOH HOH . J 5 HOH B 20 1337 1337 HOH HOH . J 5 HOH B 21 1338 1338 HOH HOH . J 5 HOH B 22 1339 1339 HOH HOH . J 5 HOH B 23 1341 1341 HOH HOH . J 5 HOH B 24 1342 1342 HOH HOH . J 5 HOH B 25 1344 1344 HOH HOH . J 5 HOH B 26 1345 1345 HOH HOH . J 5 HOH B 27 1350 1350 HOH HOH . J 5 HOH B 28 1351 1351 HOH HOH . J 5 HOH B 29 1353 1353 HOH HOH . J 5 HOH B 30 1355 1355 HOH HOH . J 5 HOH B 31 1356 1356 HOH HOH . J 5 HOH B 32 1360 1360 HOH HOH . J 5 HOH B 33 1361 1361 HOH HOH . J 5 HOH B 34 1366 1366 HOH HOH . J 5 HOH B 35 1367 1367 HOH HOH . J 5 HOH B 36 1375 1375 HOH HOH . J 5 HOH B 37 1377 1377 HOH HOH . J 5 HOH B 38 1378 1378 HOH HOH . J 5 HOH B 39 1379 1379 HOH HOH . J 5 HOH B 40 1380 1380 HOH HOH . J 5 HOH B 41 1382 1382 HOH HOH . J 5 HOH B 42 1384 1384 HOH HOH . J 5 HOH B 43 1386 1386 HOH HOH . J 5 HOH B 44 1387 1387 HOH HOH . J 5 HOH B 45 1388 1388 HOH HOH . J 5 HOH B 46 1394 1394 HOH HOH . J 5 HOH B 47 1395 1395 HOH HOH . J 5 HOH B 48 1398 1398 HOH HOH . J 5 HOH B 49 1399 1399 HOH HOH . J 5 HOH B 50 1401 1401 HOH HOH . J 5 HOH B 51 1402 1402 HOH HOH . J 5 HOH B 52 1403 1403 HOH HOH . J 5 HOH B 53 1407 1407 HOH HOH . J 5 HOH B 54 1409 1409 HOH HOH . J 5 HOH B 55 1411 1411 HOH HOH . J 5 HOH B 56 1412 1412 HOH HOH . J 5 HOH B 57 1413 1413 HOH HOH . J 5 HOH B 58 1414 1414 HOH HOH . J 5 HOH B 59 1415 1415 HOH HOH . J 5 HOH B 60 1416 1416 HOH HOH . J 5 HOH B 61 1417 1417 HOH HOH . J 5 HOH B 62 1418 1418 HOH HOH . J 5 HOH B 63 1420 1420 HOH HOH . J 5 HOH B 64 1421 1421 HOH HOH . J 5 HOH B 65 1422 1422 HOH HOH . J 5 HOH B 66 1423 1423 HOH HOH . J 5 HOH B 67 1427 1427 HOH HOH . J 5 HOH B 68 1429 1429 HOH HOH . J 5 HOH B 69 1430 1430 HOH HOH . J 5 HOH B 70 1431 1431 HOH HOH . J 5 HOH B 71 1433 1433 HOH HOH . J 5 HOH B 72 1434 1434 HOH HOH . J 5 HOH B 73 1437 1437 HOH HOH . J 5 HOH B 74 1438 1438 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F1 XXZ . . . H 4 124.986 114.799 96.084 1 34.75 ? F1 XXZ 907 B 1 HETATM 2 C C2 XXZ . . . H 4 125.861 114.059 95.422 1 29.89 ? C2 XXZ 907 B 1 HETATM 3 C C3 XXZ . . . H 4 126.002 112.718 95.757 1 32 ? C3 XXZ 907 B 1 HETATM 4 C C4 XXZ . . . H 4 126.898 111.918 95.077 1 31.08 ? C4 XXZ 907 B 1 HETATM 5 C C1 XXZ . . . H 4 127.657 112.458 94.051 1 31.62 ? C1 XXZ 907 B 1 HETATM 6 C C6 XXZ . . . H 4 127.517 113.799 93.7 1 29.15 ? C6 XXZ 907 B 1 HETATM 7 C C7 XXZ . . . H 4 126.609 114.644 94.387 1 30.79 ? C7 XXZ 907 B 1 HETATM 8 C CG XXZ . . . H 4 126.834 116.131 94.153 1 28.84 ? CG XXZ 907 B 1 HETATM 9 N N20 XXZ . . . H 4 127.387 116.517 92.966 1 28.6 ? N20 XXZ 907 B 1 HETATM 10 N N21 XXZ . . . H 4 126.45 117.065 94.997 1 30.66 ? N21 XXZ 907 B 1 HETATM 11 N N1 XXZ . . . H 4 128.337 114.432 92.546 1 28.88 ? N1 XXZ 907 B 1 HETATM 12 C C5 XXZ . . . H 4 127.786 115.569 91.927 1 30.08 ? C5 XXZ 907 B 1 HETATM 13 C C10 XXZ . . . H 4 128.897 116.012 91.017 1 30.34 ? C10 XXZ 907 B 1 HETATM 14 C C11 XXZ . . . H 4 128.458 117.245 90.209 1 33.71 ? C11 XXZ 907 B 1 HETATM 15 N N12 XXZ . . . H 4 127.214 116.944 89.442 1 34.39 ? N12 XXZ 907 B 1 HETATM 16 C C13 XXZ . . . H 4 126.105 116.51 90.285 1 31.22 ? C13 XXZ 907 B 1 HETATM 17 C C14 XXZ . . . H 4 126.57 115.221 91.018 1 28.76 ? C14 XXZ 907 B 1 HETATM 18 C C15 XXZ . . . H 4 127.031 117.044 88.064 1 33.48 ? C15 XXZ 907 B 1 HETATM 19 O O16 XXZ . . . H 4 125.939 116.792 87.554 1 32.66 ? O16 XXZ 907 B 1 HETATM 20 C C18 XXZ . . . H 4 128.02 118.515 86.318 1 32.36 ? C18 XXZ 907 B 1 HETATM 21 N NH XXZ . . . H 4 132.763 118.063 85.197 1 33.45 ? NH XXZ 907 B 1 HETATM 22 C CB XXZ . . . H 4 131.462 118.5 84.678 1 36.89 ? CB XXZ 907 B 1 HETATM 23 C C8 XXZ . . . H 4 130.312 118.118 85.58 1 34.75 ? C8 XXZ 907 B 1 HETATM 24 C CD1 XXZ . . . H 4 130.463 117.037 86.477 1 34.59 ? CD1 XXZ 907 B 1 HETATM 25 C CE1 XXZ . . . H 4 129.373 116.695 87.302 1 34.08 ? CE1 XXZ 907 B 1 HETATM 26 C CD2 XXZ . . . H 4 129.106 118.854 85.494 1 33.3 ? CD2 XXZ 907 B 1 HETATM 27 C CZ XXZ . . . H 4 128.162 117.445 87.213 1 32.79 ? CZ XXZ 907 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #