data_3E67 # _model_server_result.job_id IvYRIbOM2jank9ZRKItGCQ _model_server_result.datetime_utc '2024-11-16 08:46:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e67 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":902}' # _entry.id 3E67 # _exptl.entry_id 3E67 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3E67 _cell.length_a 214.093 _cell.length_b 214.093 _cell.length_c 115.828 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E67 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1,2 B,F,G,H,J 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 214.093 0 57.914 3 'crystal symmetry operation' 9_766 -x+2,-x+y+1,-z+5/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 321.1395 185.409977 193.046667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 129 A CYS 194 1_555 C FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc2 B SG CYS 129 B CYS 194 1_555 F FE HEM . B HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 145 n y N1 C8A H4B sing 146 n y C2 N2 H4B sing 147 n n C2 N3 H4B sing 148 n y N2 HN21 H4B sing 149 n n N2 HN22 H4B sing 150 n n N3 C4 H4B sing 151 n y N3 HN3 H4B sing 152 n n C4 O4 H4B doub 153 n n C4 C4A H4B sing 154 n y C4A C8A H4B doub 155 n y C4A N5 H4B sing 156 n n C8A N8 H4B sing 157 n n N5 C6 H4B sing 158 n n N5 HN5 H4B sing 159 n n N8 C7 H4B sing 160 n n N8 HN8 H4B sing 161 n n C6 C7 H4B sing 162 n n C6 C9 H4B sing 163 n n C6 H6 H4B sing 164 n n C7 H71 H4B sing 165 n n C7 H72 H4B sing 166 n n C9 O9 H4B sing 167 n n C9 C10 H4B sing 168 n n C9 H9 H4B sing 169 n n O9 HO9 H4B sing 170 n n C10 C11 H4B sing 171 n n C10 O10 H4B sing 172 n n C10 H10 H4B sing 173 n n C11 H111 H4B sing 174 n n C11 H112 H4B sing 175 n n C11 H113 H4B sing 176 n n O10 HO0 H4B sing 177 n n # _atom_sites.entry_id 3E67 _atom_sites.fract_transf_matrix[1][1] 0.004671 _atom_sites.fract_transf_matrix[1][2] 0.002697 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005393 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008633 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 901 901 HEM HEM . D 3 H4B A 1 902 902 H4B H4B . E 4 BVF A 1 904 904 BVF BVF . F 2 HEM B 1 901 901 HEM HEM . G 3 H4B B 1 902 902 H4B H4B . H 4 BVF B 1 905 905 BVF BVF . I 5 HOH A 1 905 905 HOH HOH . I 5 HOH A 2 906 906 HOH HOH . I 5 HOH A 3 907 907 HOH HOH . I 5 HOH A 4 908 908 HOH HOH . I 5 HOH A 5 909 909 HOH HOH . I 5 HOH A 6 910 910 HOH HOH . I 5 HOH A 7 911 911 HOH HOH . I 5 HOH A 8 912 912 HOH HOH . I 5 HOH A 9 913 913 HOH HOH . I 5 HOH A 10 914 914 HOH HOH . I 5 HOH A 11 915 915 HOH HOH . I 5 HOH A 12 916 916 HOH HOH . I 5 HOH A 13 917 917 HOH HOH . I 5 HOH A 14 918 918 HOH HOH . I 5 HOH A 15 919 919 HOH HOH . I 5 HOH A 16 920 920 HOH HOH . I 5 HOH A 17 921 921 HOH HOH . I 5 HOH A 18 922 922 HOH HOH . I 5 HOH A 19 923 923 HOH HOH . I 5 HOH A 20 924 924 HOH HOH . I 5 HOH A 21 925 925 HOH HOH . I 5 HOH A 22 926 926 HOH HOH . I 5 HOH A 23 927 927 HOH HOH . I 5 HOH A 24 928 928 HOH HOH . I 5 HOH A 25 929 929 HOH HOH . I 5 HOH A 26 930 930 HOH HOH . I 5 HOH A 27 931 931 HOH HOH . I 5 HOH A 28 932 932 HOH HOH . I 5 HOH A 29 933 933 HOH HOH . I 5 HOH A 30 934 934 HOH HOH . I 5 HOH A 31 935 935 HOH HOH . I 5 HOH A 32 936 936 HOH HOH . I 5 HOH A 33 937 937 HOH HOH . I 5 HOH A 34 938 938 HOH HOH . I 5 HOH A 35 939 939 HOH HOH . I 5 HOH A 36 940 940 HOH HOH . I 5 HOH A 37 941 941 HOH HOH . I 5 HOH A 38 942 942 HOH HOH . I 5 HOH A 39 943 943 HOH HOH . I 5 HOH A 40 944 944 HOH HOH . I 5 HOH A 41 945 945 HOH HOH . I 5 HOH A 42 946 946 HOH HOH . J 5 HOH B 1 906 906 HOH HOH . J 5 HOH B 2 907 907 HOH HOH . J 5 HOH B 3 908 908 HOH HOH . J 5 HOH B 4 909 909 HOH HOH . J 5 HOH B 5 910 910 HOH HOH . J 5 HOH B 6 911 911 HOH HOH . J 5 HOH B 7 912 912 HOH HOH . J 5 HOH B 8 913 913 HOH HOH . J 5 HOH B 9 914 914 HOH HOH . J 5 HOH B 10 915 915 HOH HOH . J 5 HOH B 11 916 916 HOH HOH . J 5 HOH B 12 917 917 HOH HOH . J 5 HOH B 13 918 918 HOH HOH . J 5 HOH B 14 919 919 HOH HOH . J 5 HOH B 15 920 920 HOH HOH . J 5 HOH B 16 921 921 HOH HOH . J 5 HOH B 17 922 922 HOH HOH . J 5 HOH B 18 923 923 HOH HOH . J 5 HOH B 19 924 924 HOH HOH . J 5 HOH B 20 925 925 HOH HOH . J 5 HOH B 21 926 926 HOH HOH . J 5 HOH B 22 927 927 HOH HOH . J 5 HOH B 23 928 928 HOH HOH . J 5 HOH B 24 929 929 HOH HOH . J 5 HOH B 25 930 930 HOH HOH . J 5 HOH B 26 931 931 HOH HOH . J 5 HOH B 27 932 932 HOH HOH . J 5 HOH B 28 933 933 HOH HOH . J 5 HOH B 29 934 934 HOH HOH . J 5 HOH B 30 935 935 HOH HOH . J 5 HOH B 31 936 936 HOH HOH . J 5 HOH B 32 937 937 HOH HOH . J 5 HOH B 33 938 938 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . D 3 113.76 112.249 32.755 1 33.18 ? N1 H4B 902 A 1 HETATM 2 C C2 H4B . . . D 3 115.046 112.546 33.011 1 33.93 ? C2 H4B 902 A 1 HETATM 3 N N2 H4B . . . D 3 115.828 112.999 32.046 1 32.72 ? N2 H4B 902 A 1 HETATM 4 N N3 H4B . . . D 3 115.551 112.472 34.243 1 33.12 ? N3 H4B 902 A 1 HETATM 5 C C4 H4B . . . D 3 114.774 112.117 35.262 1 34.95 ? C4 H4B 902 A 1 HETATM 6 O O4 H4B . . . D 3 115.128 112.246 36.433 1 38.11 ? O4 H4B 902 A 1 HETATM 7 C C4A H4B . . . D 3 113.489 111.603 35.012 1 34.77 ? C4A H4B 902 A 1 HETATM 8 C C8A H4B . . . D 3 113.032 111.631 33.685 1 33.1 ? C8A H4B 902 A 1 HETATM 9 N N5 H4B . . . D 3 112.736 111.11 35.989 1 35.71 ? N5 H4B 902 A 1 HETATM 10 N N8 H4B . . . D 3 111.879 111.033 33.369 1 32.86 ? N8 H4B 902 A 1 HETATM 11 C C6 H4B . . . D 3 111.491 110.731 35.727 1 33.64 ? C6 H4B 902 A 1 HETATM 12 C C7 H4B . . . D 3 111 110.686 34.399 1 31.69 ? C7 H4B 902 A 1 HETATM 13 C C9 H4B . . . D 3 110.741 110.19 36.92 1 34.08 ? C9 H4B 902 A 1 HETATM 14 O O9 H4B . . . D 3 110.182 111.175 37.797 1 39.33 ? O9 H4B 902 A 1 HETATM 15 C C10 H4B . . . D 3 109.66 109.243 36.455 1 35.11 ? C10 H4B 902 A 1 HETATM 16 C C11 H4B . . . D 3 108.859 108.761 37.648 1 31.74 ? C11 H4B 902 A 1 HETATM 17 O O10 H4B . . . D 3 110.27 108.133 35.788 1 40.08 ? O10 H4B 902 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #