data_3E6I
#
_model_server_result.job_id            I3jWPZ7IfBq3mdKoKiUqNw 
_model_server_result.datetime_utc      '2024-10-17 18:24:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3e6i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    3E6I 
#
_exptl.entry_id    3E6I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.136 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1H-indazole 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3E6I 
_cell.length_a            71.083 
_cell.length_b            71.083 
_cell.length_c            225.17 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3E6I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 416 A CYS 437 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc2 C FE HEM . A HEM 500 1_555 D N2 LZ1 . A LZ1 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc3 B SG CYS 416 B CYS 437 1_555 E FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc4 E FE HEM . B HEM 500 1_555 F N2 LZ1 . B LZ1 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
#
_chem_comp.formula           'C7 H6 N2' 
_chem_comp.formula_weight    118.136 
_chem_comp.id                LZ1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1H-indazole 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 LZ1 sing 300 n y 
C1 C6 LZ1 doub 301 n y 
C1 N LZ1 sing 302 n y 
C2 C3 LZ1 doub 303 n y 
C2 C9 LZ1 sing 304 n y 
C3 C4 LZ1 sing 305 n y 
C4 C5 LZ1 doub 306 n y 
C5 C6 LZ1 sing 307 n y 
N N2 LZ1 sing 308 n y 
C9 N2 LZ1 doub 309 n y 
C6 H6 LZ1 sing 310 n n 
N H LZ1 sing 311 n n 
C3 H3 LZ1 sing 312 n n 
C9 H9 LZ1 sing 313 n n 
C4 H4 LZ1 sing 314 n n 
C5 H5 LZ1 sing 315 n n 
#
_atom_sites.entry_id                     3E6I 
_atom_sites.fract_transf_matrix[1][1]    0.014068 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014068 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004441 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 500 500 HEM HEM . 
D 3 LZ1 A 1 501 501 LZ1 LZ1 . 
E 2 HEM B 1 500 500 HEM HEM . 
F 3 LZ1 B 1 501 501 LZ1 LZ1 . 
G 4 HOH A 1 502 502 HOH HOH . 
G 4 HOH A 2 503 503 HOH HOH . 
G 4 HOH A 3 504 504 HOH HOH . 
G 4 HOH A 4 505 505 HOH HOH . 
G 4 HOH A 5 506 506 HOH HOH . 
G 4 HOH A 6 507 507 HOH HOH . 
G 4 HOH A 7 508 508 HOH HOH . 
G 4 HOH A 8 509 509 HOH HOH . 
G 4 HOH A 9 510 510 HOH HOH . 
G 4 HOH A 10 511 511 HOH HOH . 
G 4 HOH A 11 512 512 HOH HOH . 
G 4 HOH A 12 513 513 HOH HOH . 
G 4 HOH A 13 514 514 HOH HOH . 
G 4 HOH A 14 515 515 HOH HOH . 
G 4 HOH A 15 516 516 HOH HOH . 
G 4 HOH A 16 517 517 HOH HOH . 
G 4 HOH A 17 518 518 HOH HOH . 
G 4 HOH A 18 519 519 HOH HOH . 
G 4 HOH A 19 520 520 HOH HOH . 
G 4 HOH A 20 521 521 HOH HOH . 
G 4 HOH A 21 522 522 HOH HOH . 
G 4 HOH A 22 523 523 HOH HOH . 
G 4 HOH A 23 524 524 HOH HOH . 
G 4 HOH A 24 525 525 HOH HOH . 
G 4 HOH A 25 526 526 HOH HOH . 
G 4 HOH A 26 527 527 HOH HOH . 
G 4 HOH A 27 528 528 HOH HOH . 
G 4 HOH A 28 529 529 HOH HOH . 
G 4 HOH A 29 530 530 HOH HOH . 
G 4 HOH A 30 531 531 HOH HOH . 
G 4 HOH A 31 532 532 HOH HOH . 
G 4 HOH A 32 533 533 HOH HOH . 
G 4 HOH A 33 534 534 HOH HOH . 
G 4 HOH A 34 535 535 HOH HOH . 
G 4 HOH A 35 536 536 HOH HOH . 
G 4 HOH A 36 537 537 HOH HOH . 
G 4 HOH A 37 538 538 HOH HOH . 
G 4 HOH A 38 539 539 HOH HOH . 
G 4 HOH A 39 540 540 HOH HOH . 
G 4 HOH A 40 541 541 HOH HOH . 
G 4 HOH A 41 542 542 HOH HOH . 
G 4 HOH A 42 543 543 HOH HOH . 
G 4 HOH A 43 544 544 HOH HOH . 
G 4 HOH A 44 545 545 HOH HOH . 
G 4 HOH A 45 546 546 HOH HOH . 
G 4 HOH A 46 547 547 HOH HOH . 
G 4 HOH A 47 548 548 HOH HOH . 
G 4 HOH A 48 549 549 HOH HOH . 
G 4 HOH A 49 550 550 HOH HOH . 
G 4 HOH A 50 551 551 HOH HOH . 
G 4 HOH A 51 552 552 HOH HOH . 
G 4 HOH A 52 553 553 HOH HOH . 
G 4 HOH A 53 554 554 HOH HOH . 
G 4 HOH A 54 556 556 HOH HOH . 
G 4 HOH A 55 557 557 HOH HOH . 
G 4 HOH A 56 558 558 HOH HOH . 
G 4 HOH A 57 559 559 HOH HOH . 
G 4 HOH A 58 560 560 HOH HOH . 
G 4 HOH A 59 561 561 HOH HOH . 
G 4 HOH A 60 562 562 HOH HOH . 
G 4 HOH A 61 563 563 HOH HOH . 
G 4 HOH A 62 564 564 HOH HOH . 
G 4 HOH A 63 565 565 HOH HOH . 
G 4 HOH A 64 566 566 HOH HOH . 
G 4 HOH A 65 567 567 HOH HOH . 
G 4 HOH A 66 568 568 HOH HOH . 
G 4 HOH A 67 569 569 HOH HOH . 
G 4 HOH A 68 570 570 HOH HOH . 
G 4 HOH A 69 572 572 HOH HOH . 
G 4 HOH A 70 573 573 HOH HOH . 
G 4 HOH A 71 574 574 HOH HOH . 
G 4 HOH A 72 575 575 HOH HOH . 
G 4 HOH A 73 576 576 HOH HOH . 
G 4 HOH A 74 577 577 HOH HOH . 
G 4 HOH A 75 578 578 HOH HOH . 
G 4 HOH A 76 579 579 HOH HOH . 
G 4 HOH A 77 581 581 HOH HOH . 
G 4 HOH A 78 582 582 HOH HOH . 
G 4 HOH A 79 583 583 HOH HOH . 
G 4 HOH A 80 584 584 HOH HOH . 
G 4 HOH A 81 585 585 HOH HOH . 
G 4 HOH A 82 586 586 HOH HOH . 
G 4 HOH A 83 587 587 HOH HOH . 
G 4 HOH A 84 588 588 HOH HOH . 
G 4 HOH A 85 589 589 HOH HOH . 
G 4 HOH A 86 590 590 HOH HOH . 
G 4 HOH A 87 591 591 HOH HOH . 
G 4 HOH A 88 592 592 HOH HOH . 
G 4 HOH A 89 593 593 HOH HOH . 
G 4 HOH A 90 594 594 HOH HOH . 
G 4 HOH A 91 595 595 HOH HOH . 
G 4 HOH A 92 596 596 HOH HOH . 
G 4 HOH A 93 597 597 HOH HOH . 
G 4 HOH A 94 598 598 HOH HOH . 
G 4 HOH A 95 599 599 HOH HOH . 
G 4 HOH A 96 600 600 HOH HOH . 
G 4 HOH A 97 601 601 HOH HOH . 
G 4 HOH A 98 602 602 HOH HOH . 
H 4 HOH B 1 502 502 HOH HOH . 
H 4 HOH B 2 503 503 HOH HOH . 
H 4 HOH B 3 504 504 HOH HOH . 
H 4 HOH B 4 505 505 HOH HOH . 
H 4 HOH B 5 506 506 HOH HOH . 
H 4 HOH B 6 507 507 HOH HOH . 
H 4 HOH B 7 508 508 HOH HOH . 
H 4 HOH B 8 509 509 HOH HOH . 
H 4 HOH B 9 510 510 HOH HOH . 
H 4 HOH B 10 511 511 HOH HOH . 
H 4 HOH B 11 512 512 HOH HOH . 
H 4 HOH B 12 513 513 HOH HOH . 
H 4 HOH B 13 514 514 HOH HOH . 
H 4 HOH B 14 515 515 HOH HOH . 
H 4 HOH B 15 516 516 HOH HOH . 
H 4 HOH B 16 517 517 HOH HOH . 
H 4 HOH B 17 518 518 HOH HOH . 
H 4 HOH B 18 519 519 HOH HOH . 
H 4 HOH B 19 520 520 HOH HOH . 
H 4 HOH B 20 521 521 HOH HOH . 
H 4 HOH B 21 522 522 HOH HOH . 
H 4 HOH B 22 523 523 HOH HOH . 
H 4 HOH B 23 524 524 HOH HOH . 
H 4 HOH B 24 525 525 HOH HOH . 
H 4 HOH B 25 526 526 HOH HOH . 
H 4 HOH B 26 528 528 HOH HOH . 
H 4 HOH B 27 529 529 HOH HOH . 
H 4 HOH B 28 530 530 HOH HOH . 
H 4 HOH B 29 531 531 HOH HOH . 
H 4 HOH B 30 532 532 HOH HOH . 
H 4 HOH B 31 533 533 HOH HOH . 
H 4 HOH B 32 534 534 HOH HOH . 
H 4 HOH B 33 535 535 HOH HOH . 
H 4 HOH B 34 536 536 HOH HOH . 
H 4 HOH B 35 537 537 HOH HOH . 
H 4 HOH B 36 538 538 HOH HOH . 
H 4 HOH B 37 539 539 HOH HOH . 
H 4 HOH B 38 540 540 HOH HOH . 
H 4 HOH B 39 541 541 HOH HOH . 
H 4 HOH B 40 542 542 HOH HOH . 
H 4 HOH B 41 544 544 HOH HOH . 
H 4 HOH B 42 545 545 HOH HOH . 
H 4 HOH B 43 546 546 HOH HOH . 
H 4 HOH B 44 547 547 HOH HOH . 
H 4 HOH B 45 548 548 HOH HOH . 
H 4 HOH B 46 549 549 HOH HOH . 
H 4 HOH B 47 550 550 HOH HOH . 
H 4 HOH B 48 551 551 HOH HOH . 
H 4 HOH B 49 552 552 HOH HOH . 
H 4 HOH B 50 553 553 HOH HOH . 
H 4 HOH B 51 554 554 HOH HOH . 
H 4 HOH B 52 555 555 HOH HOH . 
H 4 HOH B 53 556 556 HOH HOH . 
H 4 HOH B 54 557 557 HOH HOH . 
H 4 HOH B 55 558 558 HOH HOH . 
H 4 HOH B 56 560 560 HOH HOH . 
H 4 HOH B 57 561 561 HOH HOH . 
H 4 HOH B 58 562 562 HOH HOH . 
H 4 HOH B 59 563 563 HOH HOH . 
H 4 HOH B 60 564 564 HOH HOH . 
H 4 HOH B 61 565 565 HOH HOH . 
H 4 HOH B 62 566 566 HOH HOH . 
H 4 HOH B 63 567 567 HOH HOH . 
H 4 HOH B 64 568 568 HOH HOH . 
H 4 HOH B 65 569 569 HOH HOH . 
H 4 HOH B 66 572 572 HOH HOH . 
H 4 HOH B 67 573 573 HOH HOH . 
H 4 HOH B 68 574 574 HOH HOH . 
H 4 HOH B 69 576 576 HOH HOH . 
H 4 HOH B 70 577 577 HOH HOH . 
H 4 HOH B 71 578 578 HOH HOH . 
H 4 HOH B 72 579 579 HOH HOH . 
H 4 HOH B 73 580 580 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LZ1 . . . D 3 5.452 -3.331 -11.036 1 28.26 ? C1 LZ1 501 A 1 
HETATM 2 C C2 LZ1 . . . D 3 5.906 -4.577 -10.61 1 28.94 ? C2 LZ1 501 A 1 
HETATM 3 C C3 LZ1 . . . D 3 6.142 -5.601 -11.534 1 30.47 ? C3 LZ1 501 A 1 
HETATM 4 C C4 LZ1 . . . D 3 5.915 -5.364 -12.893 1 29.4 ? C4 LZ1 501 A 1 
HETATM 5 C C5 LZ1 . . . D 3 5.447 -4.115 -13.314 1 29.36 ? C5 LZ1 501 A 1 
HETATM 6 C C6 LZ1 . . . D 3 5.237 -3.087 -12.39 1 29.56 ? C6 LZ1 501 A 1 
HETATM 7 N N LZ1 . . . D 3 5.345 -2.58 -9.915 1 29.46 ? N LZ1 501 A 1 
HETATM 8 C C9 LZ1 . . . D 3 6.093 -4.629 -9.201 1 29.25 ? C9 LZ1 501 A 1 
HETATM 9 N N2 LZ1 . . . D 3 5.728 -3.373 -8.794 1 30.21 ? N2 LZ1 501 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           9 
#