data_3E6K # _model_server_result.job_id sPAHWnWidYy70pxqgtM9ZA _model_server_result.datetime_utc '2024-11-22 20:37:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e6k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":324}' # _entry.id 3E6K # _exptl.entry_id 3E6K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3E6K _cell.length_a 90.766 _cell.length_b 90.766 _cell.length_c 69.501 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E6K _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 124 A ASP 124 1_555 C MN MN . A MN 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc2 A OD2 ASP 124 A ASP 124 1_555 D MN MN . A MN 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc3 A OD1 ASP 128 A ASP 128 1_555 D MN MN . A MN 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc4 A OD2 ASP 232 A ASP 232 1_555 D MN MN . A MN 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc5 A OD2 ASP 234 A ASP 234 1_555 C MN MN . A MN 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc6 C MN MN . A MN 323 1_555 E O1 ABH . A ABH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc7 C MN MN . A MN 323 1_555 E O3 ABH . A ABH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc8 D MN MN . A MN 324 1_555 E O1 ABH . A ABH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc9 B OD1 ASP 124 B ASP 124 1_555 F MN MN . B MN 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc10 B OD2 ASP 124 B ASP 124 1_555 G MN MN . B MN 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc11 B OD1 ASP 128 B ASP 128 1_555 G MN MN . B MN 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc12 B OD2 ASP 232 B ASP 232 1_555 G MN MN . B MN 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc13 B OD2 ASP 234 B ASP 234 1_555 F MN MN . B MN 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc14 F MN MN . B MN 323 1_555 H O1 ABH . B ABH 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc15 G MN MN . B MN 324 1_555 H O2 ABH . B ABH 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc16 G MN MN . B MN 324 1_555 H O1 ABH . B ABH 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3E6K _atom_sites.fract_transf_matrix[1][1] 0.011017 _atom_sites.fract_transf_matrix[1][2] 0.006361 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012722 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014388 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 323 314 MN MN . D 2 MN A 1 324 315 MN MN . E 3 ABH A 1 552 552 ABH ABH . F 2 MN B 1 323 314 MN MN . G 2 MN B 1 324 315 MN MN . H 3 ABH B 1 555 555 ABH ABH . I 4 HOH A 1 553 1 HOH TIP . I 4 HOH A 2 554 6 HOH TIP . I 4 HOH A 3 555 8 HOH TIP . I 4 HOH A 4 556 10 HOH TIP . I 4 HOH A 5 557 11 HOH TIP . I 4 HOH A 6 558 16 HOH TIP . I 4 HOH A 7 559 18 HOH TIP . I 4 HOH A 8 560 19 HOH TIP . I 4 HOH A 9 561 21 HOH TIP . I 4 HOH A 10 562 25 HOH TIP . I 4 HOH A 11 563 26 HOH TIP . I 4 HOH A 12 564 27 HOH TIP . I 4 HOH A 13 565 29 HOH TIP . I 4 HOH A 14 566 30 HOH TIP . I 4 HOH A 15 567 31 HOH TIP . I 4 HOH A 16 568 33 HOH TIP . I 4 HOH A 17 569 34 HOH TIP . I 4 HOH A 18 570 35 HOH TIP . I 4 HOH A 19 571 39 HOH TIP . I 4 HOH A 20 572 40 HOH TIP . I 4 HOH A 21 573 42 HOH TIP . I 4 HOH A 22 574 47 HOH TIP . I 4 HOH A 23 575 48 HOH TIP . I 4 HOH A 24 576 49 HOH TIP . I 4 HOH A 25 577 50 HOH TIP . I 4 HOH A 26 578 51 HOH TIP . I 4 HOH A 27 579 54 HOH TIP . I 4 HOH A 28 580 57 HOH TIP . I 4 HOH A 29 581 58 HOH TIP . I 4 HOH A 30 582 61 HOH TIP . I 4 HOH A 31 583 63 HOH TIP . I 4 HOH A 32 584 64 HOH TIP . I 4 HOH A 33 585 66 HOH TIP . I 4 HOH A 34 586 67 HOH TIP . I 4 HOH A 35 587 68 HOH TIP . I 4 HOH A 36 588 70 HOH TIP . I 4 HOH A 37 589 72 HOH TIP . I 4 HOH A 38 590 73 HOH TIP . I 4 HOH A 39 591 74 HOH TIP . I 4 HOH A 40 592 75 HOH TIP . I 4 HOH A 41 593 79 HOH TIP . I 4 HOH A 42 594 80 HOH TIP . I 4 HOH A 43 595 87 HOH TIP . I 4 HOH A 44 596 90 HOH TIP . I 4 HOH A 45 597 92 HOH TIP . I 4 HOH A 46 598 94 HOH TIP . I 4 HOH A 47 599 95 HOH TIP . I 4 HOH A 48 600 97 HOH TIP . I 4 HOH A 49 601 101 HOH TIP . I 4 HOH A 50 602 104 HOH TIP . I 4 HOH A 51 603 105 HOH TIP . I 4 HOH A 52 604 106 HOH TIP . I 4 HOH A 53 605 107 HOH TIP . I 4 HOH A 54 606 108 HOH TIP . I 4 HOH A 55 607 109 HOH TIP . I 4 HOH A 56 608 110 HOH TIP . I 4 HOH A 57 609 111 HOH TIP . I 4 HOH A 58 610 112 HOH TIP . I 4 HOH A 59 611 113 HOH TIP . I 4 HOH A 60 612 114 HOH TIP . I 4 HOH A 61 613 115 HOH TIP . I 4 HOH A 62 614 118 HOH TIP . I 4 HOH A 63 615 122 HOH TIP . I 4 HOH A 64 616 123 HOH TIP . I 4 HOH A 65 617 124 HOH TIP . I 4 HOH A 66 618 125 HOH TIP . I 4 HOH A 67 619 126 HOH TIP . I 4 HOH A 68 620 128 HOH TIP . I 4 HOH A 69 621 130 HOH TIP . I 4 HOH A 70 622 131 HOH TIP . I 4 HOH A 71 623 132 HOH TIP . I 4 HOH A 72 624 134 HOH TIP . I 4 HOH A 73 625 135 HOH TIP . I 4 HOH A 74 626 136 HOH TIP . I 4 HOH A 75 627 137 HOH TIP . J 4 HOH B 1 556 2 HOH TIP . J 4 HOH B 2 557 3 HOH TIP . J 4 HOH B 3 558 4 HOH TIP . J 4 HOH B 4 559 5 HOH TIP . J 4 HOH B 5 560 7 HOH TIP . J 4 HOH B 6 561 9 HOH TIP . J 4 HOH B 7 562 12 HOH TIP . J 4 HOH B 8 563 13 HOH TIP . J 4 HOH B 9 564 14 HOH TIP . J 4 HOH B 10 565 15 HOH TIP . J 4 HOH B 11 566 17 HOH TIP . J 4 HOH B 12 567 20 HOH TIP . J 4 HOH B 13 568 22 HOH TIP . J 4 HOH B 14 569 23 HOH TIP . J 4 HOH B 15 570 24 HOH TIP . J 4 HOH B 16 571 28 HOH TIP . J 4 HOH B 17 572 32 HOH TIP . J 4 HOH B 18 573 36 HOH TIP . J 4 HOH B 19 574 37 HOH TIP . J 4 HOH B 20 575 38 HOH TIP . J 4 HOH B 21 576 41 HOH TIP . J 4 HOH B 22 577 43 HOH TIP . J 4 HOH B 23 578 44 HOH TIP . J 4 HOH B 24 579 45 HOH TIP . J 4 HOH B 25 580 46 HOH TIP . J 4 HOH B 26 581 52 HOH TIP . J 4 HOH B 27 582 53 HOH TIP . J 4 HOH B 28 583 55 HOH TIP . J 4 HOH B 29 584 56 HOH TIP . J 4 HOH B 30 585 59 HOH TIP . J 4 HOH B 31 586 60 HOH TIP . J 4 HOH B 32 587 62 HOH TIP . J 4 HOH B 33 588 65 HOH TIP . J 4 HOH B 34 589 69 HOH TIP . J 4 HOH B 35 590 71 HOH TIP . J 4 HOH B 36 591 76 HOH TIP . J 4 HOH B 37 592 77 HOH TIP . J 4 HOH B 38 593 78 HOH TIP . J 4 HOH B 39 594 81 HOH TIP . J 4 HOH B 40 595 82 HOH TIP . J 4 HOH B 41 596 83 HOH TIP . J 4 HOH B 42 597 84 HOH TIP . J 4 HOH B 43 598 85 HOH TIP . J 4 HOH B 44 599 86 HOH TIP . J 4 HOH B 45 600 88 HOH TIP . J 4 HOH B 46 601 89 HOH TIP . J 4 HOH B 47 602 91 HOH TIP . J 4 HOH B 48 603 93 HOH TIP . J 4 HOH B 49 604 96 HOH TIP . J 4 HOH B 50 605 98 HOH TIP . J 4 HOH B 51 606 99 HOH TIP . J 4 HOH B 52 607 100 HOH TIP . J 4 HOH B 53 608 102 HOH TIP . J 4 HOH B 54 609 103 HOH TIP . J 4 HOH B 55 610 116 HOH TIP . J 4 HOH B 56 611 117 HOH TIP . J 4 HOH B 57 612 119 HOH TIP . J 4 HOH B 58 613 120 HOH TIP . J 4 HOH B 59 614 121 HOH TIP . J 4 HOH B 60 615 127 HOH TIP . J 4 HOH B 61 616 129 HOH TIP . J 4 HOH B 62 617 138 HOH TIP . J 4 HOH B 63 618 139 HOH TIP . J 4 HOH B 64 619 140 HOH TIP . J 4 HOH B 65 620 141 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 17.722 _atom_site.Cartn_y -14.246 _atom_site.Cartn_z 3.21 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 324 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #