data_3E6T # _model_server_result.job_id mzvmt7EqN9KUl-84H4L4wg _model_server_result.datetime_utc '2024-11-24 05:34:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e6t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":902}' # _entry.id 3E6T # _exptl.entry_id 3E6T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3E6T _cell.length_a 213.988 _cell.length_b 213.988 _cell.length_c 116.822 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E6T _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1,2 B,F,G,H,J 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 213.988 0 58.411 3 'crystal symmetry operation' 9_766 -x+2,-x+y+1,-z+5/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 320.982 185.319044 194.703333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 184 n y N1 C8A H4B sing 185 n y C2 N2 H4B sing 186 n n C2 N3 H4B sing 187 n y N2 HN21 H4B sing 188 n n N2 HN22 H4B sing 189 n n N3 C4 H4B sing 190 n y N3 HN3 H4B sing 191 n n C4 O4 H4B doub 192 n n C4 C4A H4B sing 193 n y C4A C8A H4B doub 194 n y C4A N5 H4B sing 195 n n C8A N8 H4B sing 196 n n N5 C6 H4B sing 197 n n N5 HN5 H4B sing 198 n n N8 C7 H4B sing 199 n n N8 HN8 H4B sing 200 n n C6 C7 H4B sing 201 n n C6 C9 H4B sing 202 n n C6 H6 H4B sing 203 n n C7 H71 H4B sing 204 n n C7 H72 H4B sing 205 n n C9 O9 H4B sing 206 n n C9 C10 H4B sing 207 n n C9 H9 H4B sing 208 n n O9 HO9 H4B sing 209 n n C10 C11 H4B sing 210 n n C10 O10 H4B sing 211 n n C10 H10 H4B sing 212 n n C11 H111 H4B sing 213 n n C11 H112 H4B sing 214 n n C11 H113 H4B sing 215 n n O10 HO0 H4B sing 216 n n # _atom_sites.entry_id 3E6T _atom_sites.fract_transf_matrix[1][1] 0.004673 _atom_sites.fract_transf_matrix[1][2] 0.002698 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005396 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00856 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 901 901 HEM HEM . D 3 H4B A 1 902 902 H4B H4B . E 4 1A2 A 1 905 905 1A2 1A2 . F 2 HEM B 1 901 901 HEM HEM . G 3 H4B B 1 902 902 H4B H4B . H 4 1A2 B 1 905 905 1A2 1A2 . I 5 HOH A 1 999 999 HOH HOH . I 5 HOH A 2 1000 1000 HOH HOH . I 5 HOH A 3 1003 1003 HOH HOH . I 5 HOH A 4 1004 1004 HOH HOH . I 5 HOH A 5 1005 1005 HOH HOH . I 5 HOH A 6 1006 1006 HOH HOH . I 5 HOH A 7 1007 1007 HOH HOH . I 5 HOH A 8 1008 1008 HOH HOH . I 5 HOH A 9 1009 1009 HOH HOH . I 5 HOH A 10 1010 1010 HOH HOH . I 5 HOH A 11 1011 1011 HOH HOH . I 5 HOH A 12 1013 1013 HOH HOH . I 5 HOH A 13 1014 1014 HOH HOH . I 5 HOH A 14 1015 1015 HOH HOH . I 5 HOH A 15 1017 1017 HOH HOH . I 5 HOH A 16 1018 1018 HOH HOH . I 5 HOH A 17 1019 1019 HOH HOH . I 5 HOH A 18 1022 1022 HOH HOH . I 5 HOH A 19 1023 1023 HOH HOH . I 5 HOH A 20 1024 1024 HOH HOH . I 5 HOH A 21 1026 1026 HOH HOH . I 5 HOH A 22 1029 1029 HOH HOH . I 5 HOH A 23 1030 1030 HOH HOH . I 5 HOH A 24 1032 1032 HOH HOH . I 5 HOH A 25 1033 1033 HOH HOH . I 5 HOH A 26 1034 1034 HOH HOH . I 5 HOH A 27 1035 1035 HOH HOH . I 5 HOH A 28 1036 1036 HOH HOH . I 5 HOH A 29 1038 1038 HOH HOH . I 5 HOH A 30 1042 1042 HOH HOH . I 5 HOH A 31 1043 1043 HOH HOH . I 5 HOH A 32 1044 1044 HOH HOH . I 5 HOH A 33 1045 1045 HOH HOH . I 5 HOH A 34 1046 1046 HOH HOH . I 5 HOH A 35 1047 1047 HOH HOH . I 5 HOH A 36 1048 1048 HOH HOH . I 5 HOH A 37 1049 1049 HOH HOH . I 5 HOH A 38 1050 1050 HOH HOH . I 5 HOH A 39 1051 1051 HOH HOH . I 5 HOH A 40 1053 1053 HOH HOH . I 5 HOH A 41 1054 1054 HOH HOH . I 5 HOH A 42 1055 1055 HOH HOH . I 5 HOH A 43 1056 1056 HOH HOH . I 5 HOH A 44 1057 1057 HOH HOH . I 5 HOH A 45 1058 1058 HOH HOH . I 5 HOH A 46 1059 1059 HOH HOH . I 5 HOH A 47 1060 1060 HOH HOH . I 5 HOH A 48 1061 1061 HOH HOH . I 5 HOH A 49 1062 1062 HOH HOH . I 5 HOH A 50 1063 1063 HOH HOH . I 5 HOH A 51 1064 1064 HOH HOH . I 5 HOH A 52 1065 1065 HOH HOH . I 5 HOH A 53 1066 1066 HOH HOH . I 5 HOH A 54 1068 1068 HOH HOH . I 5 HOH A 55 1069 1069 HOH HOH . I 5 HOH A 56 1071 1071 HOH HOH . I 5 HOH A 57 1073 1073 HOH HOH . I 5 HOH A 58 1074 1074 HOH HOH . I 5 HOH A 59 1075 1075 HOH HOH . I 5 HOH A 60 1076 1076 HOH HOH . I 5 HOH A 61 1077 1077 HOH HOH . I 5 HOH A 62 1078 1078 HOH HOH . I 5 HOH A 63 1079 1079 HOH HOH . I 5 HOH A 64 1080 1080 HOH HOH . I 5 HOH A 65 1081 1081 HOH HOH . I 5 HOH A 66 1084 1084 HOH HOH . I 5 HOH A 67 1085 1085 HOH HOH . I 5 HOH A 68 1086 1086 HOH HOH . I 5 HOH A 69 1087 1087 HOH HOH . I 5 HOH A 70 1088 1088 HOH HOH . I 5 HOH A 71 1089 1089 HOH HOH . I 5 HOH A 72 1091 1091 HOH HOH . I 5 HOH A 73 1092 1092 HOH HOH . I 5 HOH A 74 1093 1093 HOH HOH . I 5 HOH A 75 1094 1094 HOH HOH . I 5 HOH A 76 1095 1095 HOH HOH . I 5 HOH A 77 1096 1096 HOH HOH . I 5 HOH A 78 1097 1097 HOH HOH . I 5 HOH A 79 1098 1098 HOH HOH . I 5 HOH A 80 1099 1099 HOH HOH . I 5 HOH A 81 1101 1101 HOH HOH . I 5 HOH A 82 1102 1102 HOH HOH . I 5 HOH A 83 1103 1103 HOH HOH . I 5 HOH A 84 1104 1104 HOH HOH . I 5 HOH A 85 1106 1106 HOH HOH . I 5 HOH A 86 1107 1107 HOH HOH . I 5 HOH A 87 1108 1108 HOH HOH . I 5 HOH A 88 1109 1109 HOH HOH . I 5 HOH A 89 1110 1110 HOH HOH . I 5 HOH A 90 1111 1111 HOH HOH . I 5 HOH A 91 1112 1112 HOH HOH . I 5 HOH A 92 1113 1113 HOH HOH . I 5 HOH A 93 1114 1114 HOH HOH . I 5 HOH A 94 1115 1115 HOH HOH . I 5 HOH A 95 1116 1116 HOH HOH . I 5 HOH A 96 1117 1117 HOH HOH . I 5 HOH A 97 1118 1118 HOH HOH . I 5 HOH A 98 1120 1120 HOH HOH . I 5 HOH A 99 1121 1121 HOH HOH . I 5 HOH A 100 1122 1122 HOH HOH . I 5 HOH A 101 1123 1123 HOH HOH . I 5 HOH A 102 1126 1126 HOH HOH . I 5 HOH A 103 1127 1127 HOH HOH . I 5 HOH A 104 1128 1128 HOH HOH . I 5 HOH A 105 1129 1129 HOH HOH . I 5 HOH A 106 1133 1133 HOH HOH . I 5 HOH A 107 1134 1134 HOH HOH . I 5 HOH A 108 1136 1136 HOH HOH . I 5 HOH A 109 1137 1137 HOH HOH . I 5 HOH A 110 1139 1139 HOH HOH . I 5 HOH A 111 1140 1140 HOH HOH . I 5 HOH A 112 1142 1142 HOH HOH . J 5 HOH B 1 1020 1020 HOH HOH . J 5 HOH B 2 2000 2000 HOH HOH . J 5 HOH B 3 2001 2001 HOH HOH . J 5 HOH B 4 2003 2003 HOH HOH . J 5 HOH B 5 2004 2004 HOH HOH . J 5 HOH B 6 2005 2005 HOH HOH . J 5 HOH B 7 2006 2006 HOH HOH . J 5 HOH B 8 2007 2007 HOH HOH . J 5 HOH B 9 2008 2008 HOH HOH . J 5 HOH B 10 2009 2009 HOH HOH . J 5 HOH B 11 2012 2012 HOH HOH . J 5 HOH B 12 2014 2014 HOH HOH . J 5 HOH B 13 2016 2016 HOH HOH . J 5 HOH B 14 2020 2020 HOH HOH . J 5 HOH B 15 2021 2021 HOH HOH . J 5 HOH B 16 2022 2022 HOH HOH . J 5 HOH B 17 2023 2023 HOH HOH . J 5 HOH B 18 2025 2025 HOH HOH . J 5 HOH B 19 2026 2026 HOH HOH . J 5 HOH B 20 2027 2027 HOH HOH . J 5 HOH B 21 2028 2028 HOH HOH . J 5 HOH B 22 2029 2029 HOH HOH . J 5 HOH B 23 2031 2031 HOH HOH . J 5 HOH B 24 2032 2032 HOH HOH . J 5 HOH B 25 2033 2033 HOH HOH . J 5 HOH B 26 2034 2034 HOH HOH . J 5 HOH B 27 2035 2035 HOH HOH . J 5 HOH B 28 2038 2038 HOH HOH . J 5 HOH B 29 2039 2039 HOH HOH . J 5 HOH B 30 2040 2040 HOH HOH . J 5 HOH B 31 2041 2041 HOH HOH . J 5 HOH B 32 2042 2042 HOH HOH . J 5 HOH B 33 2043 2043 HOH HOH . J 5 HOH B 34 2045 2045 HOH HOH . J 5 HOH B 35 2047 2047 HOH HOH . J 5 HOH B 36 2048 2048 HOH HOH . J 5 HOH B 37 2049 2049 HOH HOH . J 5 HOH B 38 2050 2050 HOH HOH . J 5 HOH B 39 2051 2051 HOH HOH . J 5 HOH B 40 2052 2052 HOH HOH . J 5 HOH B 41 2053 2053 HOH HOH . J 5 HOH B 42 2054 2054 HOH HOH . J 5 HOH B 43 2055 2055 HOH HOH . J 5 HOH B 44 2056 2056 HOH HOH . J 5 HOH B 45 2057 2057 HOH HOH . J 5 HOH B 46 2058 2058 HOH HOH . J 5 HOH B 47 2059 2059 HOH HOH . J 5 HOH B 48 2060 2060 HOH HOH . J 5 HOH B 49 2063 2063 HOH HOH . J 5 HOH B 50 2064 2064 HOH HOH . J 5 HOH B 51 2066 2066 HOH HOH . J 5 HOH B 52 2067 2067 HOH HOH . J 5 HOH B 53 2068 2068 HOH HOH . J 5 HOH B 54 2069 2069 HOH HOH . J 5 HOH B 55 2070 2070 HOH HOH . J 5 HOH B 56 2071 2071 HOH HOH . J 5 HOH B 57 2072 2072 HOH HOH . J 5 HOH B 58 2073 2073 HOH HOH . J 5 HOH B 59 2074 2074 HOH HOH . J 5 HOH B 60 2075 2075 HOH HOH . J 5 HOH B 61 2076 2076 HOH HOH . J 5 HOH B 62 2079 2079 HOH HOH . J 5 HOH B 63 2080 2080 HOH HOH . J 5 HOH B 64 2081 2081 HOH HOH . J 5 HOH B 65 2082 2082 HOH HOH . J 5 HOH B 66 2083 2083 HOH HOH . J 5 HOH B 67 2084 2084 HOH HOH . J 5 HOH B 68 2085 2085 HOH HOH . J 5 HOH B 69 2086 2086 HOH HOH . J 5 HOH B 70 2087 2087 HOH HOH . J 5 HOH B 71 2089 2089 HOH HOH . J 5 HOH B 72 2090 2090 HOH HOH . J 5 HOH B 73 2091 2091 HOH HOH . J 5 HOH B 74 2092 2092 HOH HOH . J 5 HOH B 75 2093 2093 HOH HOH . J 5 HOH B 76 2094 2094 HOH HOH . J 5 HOH B 77 2095 2095 HOH HOH . J 5 HOH B 78 2096 2096 HOH HOH . J 5 HOH B 79 2097 2097 HOH HOH . J 5 HOH B 80 2098 2098 HOH HOH . J 5 HOH B 81 2099 2099 HOH HOH . J 5 HOH B 82 2100 2100 HOH HOH . J 5 HOH B 83 2101 2101 HOH HOH . J 5 HOH B 84 2104 2104 HOH HOH . J 5 HOH B 85 2105 2105 HOH HOH . J 5 HOH B 86 2106 2106 HOH HOH . J 5 HOH B 87 2108 2108 HOH HOH . J 5 HOH B 88 2109 2109 HOH HOH . J 5 HOH B 89 2110 2110 HOH HOH . J 5 HOH B 90 2111 2111 HOH HOH . J 5 HOH B 91 2112 2112 HOH HOH . J 5 HOH B 92 2114 2114 HOH HOH . J 5 HOH B 93 2115 2115 HOH HOH . J 5 HOH B 94 2118 2118 HOH HOH . J 5 HOH B 95 2122 2122 HOH HOH . J 5 HOH B 96 2123 2123 HOH HOH . J 5 HOH B 97 2125 2125 HOH HOH . J 5 HOH B 98 2127 2127 HOH HOH . J 5 HOH B 99 2128 2128 HOH HOH . J 5 HOH B 100 2129 2129 HOH HOH . J 5 HOH B 101 2131 2131 HOH HOH . J 5 HOH B 102 2133 2133 HOH HOH . J 5 HOH B 103 2134 2134 HOH HOH . J 5 HOH B 104 2135 2135 HOH HOH . J 5 HOH B 105 2136 2136 HOH HOH . J 5 HOH B 106 2138 2138 HOH HOH . J 5 HOH B 107 2139 2139 HOH HOH . J 5 HOH B 108 2140 2140 HOH HOH . J 5 HOH B 109 2141 2141 HOH HOH . J 5 HOH B 110 2142 2142 HOH HOH . J 5 HOH B 111 2143 2143 HOH HOH . J 5 HOH B 112 2145 2145 HOH HOH . J 5 HOH B 113 2146 2146 HOH HOH . J 5 HOH B 114 2147 2147 HOH HOH . J 5 HOH B 115 2148 2148 HOH HOH . J 5 HOH B 116 2149 2149 HOH HOH . J 5 HOH B 117 2150 2150 HOH HOH . J 5 HOH B 118 2151 2151 HOH HOH . J 5 HOH B 119 2152 2152 HOH HOH . J 5 HOH B 120 2153 2153 HOH HOH . J 5 HOH B 121 2154 2154 HOH HOH . J 5 HOH B 122 2155 2155 HOH HOH . J 5 HOH B 123 2156 2156 HOH HOH . J 5 HOH B 124 2157 2157 HOH HOH . J 5 HOH B 125 2158 2158 HOH HOH . J 5 HOH B 126 2159 2159 HOH HOH . J 5 HOH B 127 2160 2160 HOH HOH . J 5 HOH B 128 2161 2161 HOH HOH . J 5 HOH B 129 2162 2162 HOH HOH . J 5 HOH B 130 2163 2163 HOH HOH . J 5 HOH B 131 2164 2164 HOH HOH . J 5 HOH B 132 2166 2166 HOH HOH . J 5 HOH B 133 2167 2167 HOH HOH . J 5 HOH B 134 2169 2169 HOH HOH . J 5 HOH B 135 2170 2170 HOH HOH . J 5 HOH B 136 2171 2171 HOH HOH . J 5 HOH B 137 2173 2173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . D 3 113.764 112.416 32.675 1 48.38 ? N1 H4B 902 A 1 HETATM 2 C C2 H4B . . . D 3 115.028 112.804 32.86 1 47.76 ? C2 H4B 902 A 1 HETATM 3 N N2 H4B . . . D 3 115.751 113.161 31.809 1 47.06 ? N2 H4B 902 A 1 HETATM 4 N N3 H4B . . . D 3 115.576 112.873 34.076 1 46.86 ? N3 H4B 902 A 1 HETATM 5 C C4 H4B . . . D 3 114.864 112.564 35.152 1 47.89 ? C4 H4B 902 A 1 HETATM 6 O O4 H4B . . . D 3 115.3 112.732 36.291 1 48.26 ? O4 H4B 902 A 1 HETATM 7 C C4A H4B . . . D 3 113.561 112.048 35.004 1 48.59 ? C4A H4B 902 A 1 HETATM 8 C C8A H4B . . . D 3 113.065 111.916 33.689 1 48.39 ? C8A H4B 902 A 1 HETATM 9 N N5 H4B . . . D 3 112.822 111.711 36.054 1 48.61 ? N5 H4B 902 A 1 HETATM 10 N N8 H4B . . . D 3 111.906 111.291 33.463 1 47.22 ? N8 H4B 902 A 1 HETATM 11 C C6 H4B . . . D 3 111.433 111.322 35.865 1 48.39 ? C6 H4B 902 A 1 HETATM 12 C C7 H4B . . . D 3 111.052 110.971 34.504 1 47.48 ? C7 H4B 902 A 1 HETATM 13 C C9 H4B . . . D 3 110.85 110.617 37.106 1 48.33 ? C9 H4B 902 A 1 HETATM 14 O O9 H4B . . . D 3 110.434 111.6 38.061 1 49.78 ? O9 H4B 902 A 1 HETATM 15 C C10 H4B . . . D 3 109.677 109.698 36.792 1 48.16 ? C10 H4B 902 A 1 HETATM 16 C C11 H4B . . . D 3 108.993 109.248 38.082 1 46.46 ? C11 H4B 902 A 1 HETATM 17 O O10 H4B . . . D 3 110.161 108.557 36.076 1 49.56 ? O10 H4B 902 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 17 #