data_3E6Y # _model_server_result.job_id rRl_vh8QpF_Q54ahZlAvOA _model_server_result.datetime_utc '2025-04-06 20:28:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e6y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":261}' # _entry.id 3E6Y # _exptl.entry_id 3E6Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 652.769 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Cotylenin A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.1 _cell.angle_gamma 90 _cell.entry_id 3E6Y _cell.length_a 41.8 _cell.length_b 141.9 _cell.length_c 51.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E6Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,C,E,F,H,J 2 1 B,D,G,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C TYR 3 C TYR 3 1_555 C N TPO 4 C TPO 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 C C TPO 4 C TPO 4 1_555 C N VAL 5 C VAL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 D C TYR 3 D TYR 3 1_555 D N TPO 4 D TPO 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 D C TPO 4 D TPO 4 1_555 D N VAL 5 D VAL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C34 H52 O12' _chem_comp.formula_weight 652.769 _chem_comp.id CW1 _chem_comp.mon_nstd_flag . _chem_comp.name 'Cotylenin A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAH CAL CW1 doub 70 n n CAL OAX CW1 sing 71 n n OAX CAN CW1 sing 72 n n CAN CAQ CW1 sing 73 n n CAQ CBR CW1 sing 74 n n CBR CAG CW1 sing 75 n n CBR OBC CW1 sing 76 n n CBR CBM CW1 sing 77 n n OBC CBT CW1 sing 78 n n CBT CBK CW1 sing 79 n n CBT OBB CW1 sing 80 n n CBT CBN CW1 sing 81 n n CBK OAY CW1 sing 82 n n CBK CAT CW1 sing 83 n n OAY CBL CW1 sing 84 n n CAT OAV CW1 sing 85 n n OAV CAA CW1 sing 86 n n OBB CBM CW1 sing 87 n n CBM OAZ CW1 sing 88 n n OAZ CBN CW1 sing 89 n n CBN CBI CW1 sing 90 n n CBI OAI CW1 sing 91 n n CBI CBL CW1 sing 92 n n CBL OBA CW1 sing 93 n n OBA CBQ CW1 sing 94 n n CBQ CBF CW1 sing 95 n n CBQ CBJ CW1 sing 96 n n CBF CBD CW1 doub 97 n n CBF CBO CW1 sing 98 n n CBD CBG CW1 sing 99 n n CBD CAO CW1 sing 100 n n CBG CAD CW1 sing 101 n n CBG CAC CW1 sing 102 n n CAO CAP CW1 sing 103 n n CAP CBO CW1 sing 104 n n CBO CAF CW1 sing 105 n n CBO CAM CW1 sing 106 n n CAM CBE CW1 doub 107 n n CBE CBS CW1 sing 108 n n CBE CBP CW1 sing 109 n n CBS CAU CW1 sing 110 n n CBS OAK CW1 sing 111 n n CBS CAS CW1 sing 112 n n CAU OAW CW1 sing 113 n n OAW CAB CW1 sing 114 n n CAS CAR CW1 sing 115 n n CAR CBP CW1 sing 116 n n CBP CBH CW1 sing 117 n n CBH CAE CW1 sing 118 n n CBH CBJ CW1 sing 119 n n CBJ OAJ CW1 sing 120 n n CAL HAL CW1 sing 121 n n CAN HAN CW1 sing 122 n n CAN HANA CW1 sing 123 n n CAQ HAQ CW1 sing 124 n n CAQ HAQA CW1 sing 125 n n CAG HAG CW1 sing 126 n n CAG HAGA CW1 sing 127 n n CAG HAGB CW1 sing 128 n n CBK HBK CW1 sing 129 n n CAT HAT CW1 sing 130 n n CAT HATA CW1 sing 131 n n CAA HAA CW1 sing 132 n n CAA HAAA CW1 sing 133 n n CAA HAAB CW1 sing 134 n n CBM HBM CW1 sing 135 n n CBN HBN CW1 sing 136 n n CBI HBI CW1 sing 137 n n OAI HOAI CW1 sing 138 n n CBL HBL CW1 sing 139 n n CBQ HBQ CW1 sing 140 n n CBG HBG CW1 sing 141 e n CAD HAD CW1 sing 142 n n CAD HADA CW1 sing 143 n n CAD HADB CW1 sing 144 n n CAC HAC CW1 sing 145 n n CAC HACA CW1 sing 146 n n CAC HACB CW1 sing 147 n n CAO HAO CW1 sing 148 n n CAO HAOA CW1 sing 149 n n CAP HAP CW1 sing 150 n n CAP HAPA CW1 sing 151 n n CAF HAF CW1 sing 152 n n CAF HAFA CW1 sing 153 n n CAF HAFB CW1 sing 154 n n CAM HAM CW1 sing 155 n n CAU HAU CW1 sing 156 n n CAU HAUA CW1 sing 157 n n CAB HAB CW1 sing 158 n n CAB HABA CW1 sing 159 n n CAB HABB CW1 sing 160 n n OAK HOAK CW1 sing 161 n n CAS HAS CW1 sing 162 n n CAS HASA CW1 sing 163 n n CAR HAR CW1 sing 164 n n CAR HARA CW1 sing 165 n n CBP HBP CW1 sing 166 n n CBH HBH CW1 sing 167 n n CAE HAE CW1 sing 168 n n CAE HAEA CW1 sing 169 n n CAE HAEB CW1 sing 170 n n CBJ HBJ CW1 sing 171 n n OAJ HOAJ CW1 sing 172 n n # _atom_sites.entry_id 3E6Y _atom_sites.fract_transf_matrix[1][1] 0.023923 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010701 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021313 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CW1 A 1 261 2 CW1 CW1 . F 4 CL A 1 262 3 CL CL . G 3 CW1 B 1 261 1 CW1 CW1 . H 5 HOH A 1 263 1 HOH HOH . H 5 HOH A 2 264 2 HOH HOH . H 5 HOH A 3 265 3 HOH HOH . H 5 HOH A 4 266 7 HOH HOH . H 5 HOH A 5 267 10 HOH HOH . H 5 HOH A 6 268 11 HOH HOH . H 5 HOH A 7 269 14 HOH HOH . H 5 HOH A 8 270 15 HOH HOH . H 5 HOH A 9 271 17 HOH HOH . H 5 HOH A 10 272 18 HOH HOH . H 5 HOH A 11 273 19 HOH HOH . H 5 HOH A 12 274 21 HOH HOH . H 5 HOH A 13 275 22 HOH HOH . H 5 HOH A 14 276 23 HOH HOH . H 5 HOH A 15 277 30 HOH HOH . H 5 HOH A 16 278 31 HOH HOH . H 5 HOH A 17 279 32 HOH HOH . H 5 HOH A 18 280 37 HOH HOH . H 5 HOH A 19 281 38 HOH HOH . H 5 HOH A 20 282 40 HOH HOH . H 5 HOH A 21 283 42 HOH HOH . H 5 HOH A 22 284 43 HOH HOH . H 5 HOH A 23 285 45 HOH HOH . H 5 HOH A 24 286 46 HOH HOH . H 5 HOH A 25 287 48 HOH HOH . H 5 HOH A 26 288 49 HOH HOH . H 5 HOH A 27 289 52 HOH HOH . H 5 HOH A 28 290 53 HOH HOH . H 5 HOH A 29 291 56 HOH HOH . H 5 HOH A 30 292 59 HOH HOH . H 5 HOH A 31 293 61 HOH HOH . H 5 HOH A 32 294 62 HOH HOH . H 5 HOH A 33 295 63 HOH HOH . H 5 HOH A 34 296 64 HOH HOH . H 5 HOH A 35 297 65 HOH HOH . H 5 HOH A 36 298 67 HOH HOH . H 5 HOH A 37 299 68 HOH HOH . H 5 HOH A 38 300 69 HOH HOH . H 5 HOH A 39 301 70 HOH HOH . H 5 HOH A 40 302 73 HOH HOH . H 5 HOH A 41 303 74 HOH HOH . H 5 HOH A 42 304 77 HOH HOH . H 5 HOH A 43 305 79 HOH HOH . H 5 HOH A 44 306 80 HOH HOH . H 5 HOH A 45 307 81 HOH HOH . H 5 HOH A 46 308 82 HOH HOH . H 5 HOH A 47 309 84 HOH HOH . H 5 HOH A 48 310 86 HOH HOH . H 5 HOH A 49 311 89 HOH HOH . H 5 HOH A 50 312 90 HOH HOH . H 5 HOH A 51 313 91 HOH HOH . H 5 HOH A 52 314 96 HOH HOH . H 5 HOH A 53 315 97 HOH HOH . H 5 HOH A 54 316 98 HOH HOH . H 5 HOH A 55 317 99 HOH HOH . I 5 HOH B 1 262 4 HOH HOH . I 5 HOH B 2 263 5 HOH HOH . I 5 HOH B 3 264 6 HOH HOH . I 5 HOH B 4 265 8 HOH HOH . I 5 HOH B 5 266 9 HOH HOH . I 5 HOH B 6 267 12 HOH HOH . I 5 HOH B 7 268 13 HOH HOH . I 5 HOH B 8 269 16 HOH HOH . I 5 HOH B 9 270 20 HOH HOH . I 5 HOH B 10 271 24 HOH HOH . I 5 HOH B 11 272 25 HOH HOH . I 5 HOH B 12 273 26 HOH HOH . I 5 HOH B 13 274 28 HOH HOH . I 5 HOH B 14 275 29 HOH HOH . I 5 HOH B 15 276 33 HOH HOH . I 5 HOH B 16 277 35 HOH HOH . I 5 HOH B 17 278 36 HOH HOH . I 5 HOH B 18 279 39 HOH HOH . I 5 HOH B 19 280 41 HOH HOH . I 5 HOH B 20 281 44 HOH HOH . I 5 HOH B 21 282 47 HOH HOH . I 5 HOH B 22 283 50 HOH HOH . I 5 HOH B 23 284 51 HOH HOH . I 5 HOH B 24 285 54 HOH HOH . I 5 HOH B 25 286 55 HOH HOH . I 5 HOH B 26 287 57 HOH HOH . I 5 HOH B 27 288 58 HOH HOH . I 5 HOH B 28 289 60 HOH HOH . I 5 HOH B 29 290 66 HOH HOH . I 5 HOH B 30 291 71 HOH HOH . I 5 HOH B 31 292 72 HOH HOH . I 5 HOH B 32 293 75 HOH HOH . I 5 HOH B 33 294 76 HOH HOH . I 5 HOH B 34 295 78 HOH HOH . I 5 HOH B 35 296 83 HOH HOH . I 5 HOH B 36 297 85 HOH HOH . I 5 HOH B 37 298 87 HOH HOH . I 5 HOH B 38 299 88 HOH HOH . I 5 HOH B 39 300 92 HOH HOH . I 5 HOH B 40 301 94 HOH HOH . I 5 HOH B 41 302 95 HOH HOH . I 5 HOH B 42 303 100 HOH HOH . J 5 HOH C 1 27 27 HOH HOH . J 5 HOH C 2 34 34 HOH HOH . J 5 HOH C 3 93 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAH CW1 . . . E 3 -21.004 -19.656 -23.508 1 29.25 ? OAH CW1 261 A 1 HETATM 2 C CAL CW1 . . . E 3 -20.591 -20.82 -23.393 1 26.8 ? CAL CW1 261 A 1 HETATM 3 O OAX CW1 . . . E 3 -19.224 -21.078 -23.423 1 27.43 ? OAX CW1 261 A 1 HETATM 4 C CAN CW1 . . . E 3 -18.488 -19.898 -23.543 1 26.08 ? CAN CW1 261 A 1 HETATM 5 C CAQ CW1 . . . E 3 -17.841 -19.974 -24.927 1 26.05 ? CAQ CW1 261 A 1 HETATM 6 C CBR CW1 . . . E 3 -16.294 -20.065 -24.733 1 25.33 ? CBR CW1 261 A 1 HETATM 7 C CAG CW1 . . . E 3 -15.607 -21.38 -25.173 1 24.64 ? CAG CW1 261 A 1 HETATM 8 O OBC CW1 . . . E 3 -15.371 -18.95 -24.285 1 24.33 ? OBC CW1 261 A 1 HETATM 9 C CBT CW1 . . . E 3 -14.886 -18.285 -25.425 1 23.22 ? CBT CW1 261 A 1 HETATM 10 C CBK CW1 . . . E 3 -13.397 -17.749 -25.509 1 22.39 ? CBK CW1 261 A 1 HETATM 11 O OAY CW1 . . . E 3 -13.265 -16.511 -24.793 1 20.91 ? OAY CW1 261 A 1 HETATM 12 C CAT CW1 . . . E 3 -12.349 -18.814 -25.314 1 23.5 ? CAT CW1 261 A 1 HETATM 13 O OAV CW1 . . . E 3 -11.517 -18.533 -24.235 1 25.86 ? OAV CW1 261 A 1 HETATM 14 C CAA CW1 . . . E 3 -12.327 -18.954 -23.102 1 25.55 ? CAA CW1 261 A 1 HETATM 15 O OBB CW1 . . . E 3 -15.017 -19.243 -26.496 1 24.44 ? OBB CW1 261 A 1 HETATM 16 C CBM CW1 . . . E 3 -16.314 -19.504 -26.305 1 25.06 ? CBM CW1 261 A 1 HETATM 17 O OAZ CW1 . . . E 3 -16.672 -18.148 -26.71 1 23.89 ? OAZ CW1 261 A 1 HETATM 18 C CBN CW1 . . . E 3 -15.922 -17.286 -25.809 1 22.53 ? CBN CW1 261 A 1 HETATM 19 C CBI CW1 . . . E 3 -15.165 -16.088 -26.393 1 21.38 ? CBI CW1 261 A 1 HETATM 20 O OAI CW1 . . . E 3 -16.126 -15.14 -26.84 1 17.72 ? OAI CW1 261 A 1 HETATM 21 C CBL CW1 . . . E 3 -14.165 -15.5 -25.352 1 19.74 ? CBL CW1 261 A 1 HETATM 22 O OBA CW1 . . . E 3 -14.911 -15.129 -24.192 1 16.73 ? OBA CW1 261 A 1 HETATM 23 C CBQ CW1 . . . E 3 -14.185 -14.129 -23.401 1 16.03 ? CBQ CW1 261 A 1 HETATM 24 C CBF CW1 . . . E 3 -14.094 -14.742 -21.999 1 17.02 ? CBF CW1 261 A 1 HETATM 25 C CBD CW1 . . . E 3 -15.027 -15.504 -21.269 1 16.33 ? CBD CW1 261 A 1 HETATM 26 C CBG CW1 . . . E 3 -16.522 -15.544 -21.69 1 15.76 ? CBG CW1 261 A 1 HETATM 27 C CAD CW1 . . . E 3 -17.218 -16.936 -21.682 1 16.39 ? CAD CW1 261 A 1 HETATM 28 C CAC CW1 . . . E 3 -17.263 -14.471 -20.849 1 13.41 ? CAC CW1 261 A 1 HETATM 29 C CAO CW1 . . . E 3 -14.439 -15.934 -19.947 1 16.61 ? CAO CW1 261 A 1 HETATM 30 C CAP CW1 . . . E 3 -12.931 -15.908 -20.197 1 19.21 ? CAP CW1 261 A 1 HETATM 31 C CBO CW1 . . . E 3 -12.727 -14.765 -21.238 1 16.69 ? CBO CW1 261 A 1 HETATM 32 C CAF CW1 . . . E 3 -11.543 -15.069 -22.174 1 17.71 ? CAF CW1 261 A 1 HETATM 33 C CAM CW1 . . . E 3 -12.414 -13.601 -20.488 1 16.68 ? CAM CW1 261 A 1 HETATM 34 C CBE CW1 . . . E 3 -12.999 -12.317 -20.436 1 13.95 ? CBE CW1 261 A 1 HETATM 35 C CBS CW1 . . . E 3 -12.655 -11.164 -19.475 1 13.14 ? CBS CW1 261 A 1 HETATM 36 C CAU CW1 . . . E 3 -11.45 -10.324 -19.83 1 13.47 ? CAU CW1 261 A 1 HETATM 37 O OAW CW1 . . . E 3 -10.549 -10.517 -18.715 1 12.92 ? OAW CW1 261 A 1 HETATM 38 C CAB CW1 . . . E 3 -9.269 -9.923 -19.003 1 15.94 ? CAB CW1 261 A 1 HETATM 39 O OAK CW1 . . . E 3 -12.471 -11.699 -18.141 1 14.2 ? OAK CW1 261 A 1 HETATM 40 C CAS CW1 . . . E 3 -13.863 -10.303 -19.382 1 13.05 ? CAS CW1 261 A 1 HETATM 41 C CAR CW1 . . . E 3 -14.697 -10.528 -20.633 1 13.26 ? CAR CW1 261 A 1 HETATM 42 C CBP CW1 . . . E 3 -14.287 -11.877 -21.196 1 13.87 ? CBP CW1 261 A 1 HETATM 43 C CBH CW1 . . . E 3 -14.18 -11.686 -22.747 1 11.45 ? CBH CW1 261 A 1 HETATM 44 C CAE CW1 . . . E 3 -12.75 -11.447 -23.34 1 10.18 ? CAE CW1 261 A 1 HETATM 45 C CBJ CW1 . . . E 3 -14.969 -12.814 -23.39 1 14.03 ? CBJ CW1 261 A 1 HETATM 46 O OAJ CW1 . . . E 3 -15.382 -12.426 -24.709 1 13.66 ? OAJ CW1 261 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 46 #