data_3E7I # _model_server_result.job_id V_7DlzzoBR2w5K41kXRdLg _model_server_result.datetime_utc '2024-11-04 23:10:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e7i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":902}' # _entry.id 3E7I # _exptl.entry_id 3E7I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3E7I _cell.length_a 213.967 _cell.length_b 213.967 _cell.length_c 113.13 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E7I _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,M 1 1,2 B,I,J,K,L,N 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 213.967 0 56.565 3 'crystal symmetry operation' 9_766 -x+2,-x+y+1,-z+5/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 320.9505 185.300858 188.55 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 39 A CYS 104 1_555 D ZN ZN . A ZN 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? metalc ? metalc2 A SG CYS 44 A CYS 109 1_555 D ZN ZN . A ZN 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc3 A SG CYS 129 A CYS 194 1_555 E FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc4 B SG CYS 39 B CYS 104 1_555 I ZN ZN . B ZN 2903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc5 B SG CYS 44 B CYS 109 1_555 I ZN ZN . B ZN 2903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 158 n y N1 C8A H4B sing 159 n y C2 N2 H4B sing 160 n n C2 N3 H4B sing 161 n y N2 HN21 H4B sing 162 n n N2 HN22 H4B sing 163 n n N3 C4 H4B sing 164 n y N3 HN3 H4B sing 165 n n C4 O4 H4B doub 166 n n C4 C4A H4B sing 167 n y C4A C8A H4B doub 168 n y C4A N5 H4B sing 169 n n C8A N8 H4B sing 170 n n N5 C6 H4B sing 171 n n N5 HN5 H4B sing 172 n n N8 C7 H4B sing 173 n n N8 HN8 H4B sing 174 n n C6 C7 H4B sing 175 n n C6 C9 H4B sing 176 n n C6 H6 H4B sing 177 n n C7 H71 H4B sing 178 n n C7 H72 H4B sing 179 n n C9 O9 H4B sing 180 n n C9 C10 H4B sing 181 n n C9 H9 H4B sing 182 n n O9 HO9 H4B sing 183 n n C10 C11 H4B sing 184 n n C10 O10 H4B sing 185 n n C10 H10 H4B sing 186 n n C11 H111 H4B sing 187 n n C11 H112 H4B sing 188 n n C11 H113 H4B sing 189 n n O10 HO0 H4B sing 190 n n # _atom_sites.entry_id 3E7I _atom_sites.fract_transf_matrix[1][1] 0.004674 _atom_sites.fract_transf_matrix[1][2] 0.002698 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005397 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 903 903 SO4 SO4 . D 3 ZN A 1 904 904 ZN ZN . E 4 HEM A 1 901 901 HEM HEM . F 5 H4B A 1 902 902 H4B H4B . G 6 B2 A 1 906 906 B2 B2 . H 6 B2 A 1 907 907 B2 B2 . I 3 ZN B 1 2903 2903 ZN ZN . J 4 HEM B 1 2901 2901 HEM HEM . K 5 H4B B 1 2902 2902 H4B H4B . L 6 B2 B 1 2906 2906 B2 B2 . M 7 HOH A 1 1001 1001 HOH HOH . M 7 HOH A 2 1002 1002 HOH HOH . M 7 HOH A 3 1003 1003 HOH HOH . M 7 HOH A 4 1004 1004 HOH HOH . M 7 HOH A 5 1005 1005 HOH HOH . M 7 HOH A 6 1006 1006 HOH HOH . M 7 HOH A 7 1007 1007 HOH HOH . M 7 HOH A 8 1008 1008 HOH HOH . M 7 HOH A 9 1009 1009 HOH HOH . M 7 HOH A 10 1010 1010 HOH HOH . M 7 HOH A 11 1011 1011 HOH HOH . M 7 HOH A 12 1012 1012 HOH HOH . M 7 HOH A 13 1013 1013 HOH HOH . M 7 HOH A 14 1014 1014 HOH HOH . M 7 HOH A 15 1015 1015 HOH HOH . M 7 HOH A 16 1016 1016 HOH HOH . M 7 HOH A 17 1017 1017 HOH HOH . M 7 HOH A 18 1018 1018 HOH HOH . M 7 HOH A 19 1019 1019 HOH HOH . M 7 HOH A 20 1020 1020 HOH HOH . M 7 HOH A 21 1021 1021 HOH HOH . M 7 HOH A 22 1022 1022 HOH HOH . M 7 HOH A 23 1023 1023 HOH HOH . M 7 HOH A 24 1024 1024 HOH HOH . M 7 HOH A 25 1025 1025 HOH HOH . M 7 HOH A 26 1026 1026 HOH HOH . M 7 HOH A 27 1027 1027 HOH HOH . M 7 HOH A 28 1028 1028 HOH HOH . M 7 HOH A 29 1029 1029 HOH HOH . M 7 HOH A 30 1030 1030 HOH HOH . M 7 HOH A 31 1031 1031 HOH HOH . M 7 HOH A 32 1032 1032 HOH HOH . M 7 HOH A 33 1033 1033 HOH HOH . M 7 HOH A 34 1034 1034 HOH HOH . M 7 HOH A 35 1035 1035 HOH HOH . M 7 HOH A 36 1036 1036 HOH HOH . M 7 HOH A 37 1037 1037 HOH HOH . M 7 HOH A 38 1038 1038 HOH HOH . M 7 HOH A 39 1039 1039 HOH HOH . M 7 HOH A 40 1040 1040 HOH HOH . M 7 HOH A 41 1041 1041 HOH HOH . M 7 HOH A 42 1042 1042 HOH HOH . M 7 HOH A 43 1043 1043 HOH HOH . M 7 HOH A 44 1044 1044 HOH HOH . M 7 HOH A 45 1045 1045 HOH HOH . M 7 HOH A 46 1046 1046 HOH HOH . M 7 HOH A 47 1047 1047 HOH HOH . M 7 HOH A 48 1048 1048 HOH HOH . M 7 HOH A 49 1049 1049 HOH HOH . M 7 HOH A 50 1050 1050 HOH HOH . M 7 HOH A 51 1051 1051 HOH HOH . M 7 HOH A 52 1052 1052 HOH HOH . M 7 HOH A 53 1053 1053 HOH HOH . M 7 HOH A 54 1054 1054 HOH HOH . M 7 HOH A 55 1055 1055 HOH HOH . M 7 HOH A 56 1056 1056 HOH HOH . M 7 HOH A 57 1057 1057 HOH HOH . M 7 HOH A 58 1058 1058 HOH HOH . M 7 HOH A 59 1059 1059 HOH HOH . M 7 HOH A 60 1060 1060 HOH HOH . M 7 HOH A 61 1061 1061 HOH HOH . M 7 HOH A 62 1062 1062 HOH HOH . M 7 HOH A 63 1063 1063 HOH HOH . M 7 HOH A 64 1064 1064 HOH HOH . M 7 HOH A 65 1065 1065 HOH HOH . M 7 HOH A 66 1066 1066 HOH HOH . M 7 HOH A 67 1067 1067 HOH HOH . M 7 HOH A 68 1068 1068 HOH HOH . M 7 HOH A 69 1069 1069 HOH HOH . M 7 HOH A 70 1070 1070 HOH HOH . M 7 HOH A 71 1071 1071 HOH HOH . M 7 HOH A 72 1072 1072 HOH HOH . M 7 HOH A 73 1073 1073 HOH HOH . M 7 HOH A 74 1074 1074 HOH HOH . M 7 HOH A 75 1075 1075 HOH HOH . M 7 HOH A 76 1076 1076 HOH HOH . M 7 HOH A 77 1077 1077 HOH HOH . M 7 HOH A 78 1078 1078 HOH HOH . M 7 HOH A 79 1079 1079 HOH HOH . N 7 HOH B 1 2000 2000 HOH HOH . N 7 HOH B 2 2001 2001 HOH HOH . N 7 HOH B 3 2002 2002 HOH HOH . N 7 HOH B 4 2003 2003 HOH HOH . N 7 HOH B 5 2004 2004 HOH HOH . N 7 HOH B 6 2005 2005 HOH HOH . N 7 HOH B 7 2006 2006 HOH HOH . N 7 HOH B 8 2007 2007 HOH HOH . N 7 HOH B 9 2008 2008 HOH HOH . N 7 HOH B 10 2009 2009 HOH HOH . N 7 HOH B 11 2010 2010 HOH HOH . N 7 HOH B 12 2011 2011 HOH HOH . N 7 HOH B 13 2012 2012 HOH HOH . N 7 HOH B 14 2013 2013 HOH HOH . N 7 HOH B 15 2014 2014 HOH HOH . N 7 HOH B 16 2015 2015 HOH HOH . N 7 HOH B 17 2016 2016 HOH HOH . N 7 HOH B 18 2017 2017 HOH HOH . N 7 HOH B 19 2018 2018 HOH HOH . N 7 HOH B 20 2019 2019 HOH HOH . N 7 HOH B 21 2020 2020 HOH HOH . N 7 HOH B 22 2021 2021 HOH HOH . N 7 HOH B 23 2022 2022 HOH HOH . N 7 HOH B 24 2023 2023 HOH HOH . N 7 HOH B 25 2024 2024 HOH HOH . N 7 HOH B 26 2025 2025 HOH HOH . N 7 HOH B 27 2026 2026 HOH HOH . N 7 HOH B 28 2027 2027 HOH HOH . N 7 HOH B 29 2028 2028 HOH HOH . N 7 HOH B 30 2029 2029 HOH HOH . N 7 HOH B 31 2030 2030 HOH HOH . N 7 HOH B 32 2031 2031 HOH HOH . N 7 HOH B 33 2032 2032 HOH HOH . N 7 HOH B 34 2033 2033 HOH HOH . N 7 HOH B 35 2034 2034 HOH HOH . N 7 HOH B 36 2035 2035 HOH HOH . N 7 HOH B 37 2036 2036 HOH HOH . N 7 HOH B 38 2037 2037 HOH HOH . N 7 HOH B 39 2038 2038 HOH HOH . N 7 HOH B 40 2039 2039 HOH HOH . N 7 HOH B 41 2040 2040 HOH HOH . N 7 HOH B 42 2041 2041 HOH HOH . N 7 HOH B 43 2042 2042 HOH HOH . N 7 HOH B 44 2043 2043 HOH HOH . N 7 HOH B 45 2044 2044 HOH HOH . N 7 HOH B 46 2045 2045 HOH HOH . N 7 HOH B 47 2046 2046 HOH HOH . N 7 HOH B 48 2047 2047 HOH HOH . N 7 HOH B 49 2048 2048 HOH HOH . N 7 HOH B 50 2049 2049 HOH HOH . N 7 HOH B 51 2050 2050 HOH HOH . N 7 HOH B 52 2051 2051 HOH HOH . N 7 HOH B 53 2052 2052 HOH HOH . N 7 HOH B 54 2053 2053 HOH HOH . N 7 HOH B 55 2054 2054 HOH HOH . N 7 HOH B 56 2055 2055 HOH HOH . N 7 HOH B 57 2056 2056 HOH HOH . N 7 HOH B 58 2057 2057 HOH HOH . N 7 HOH B 59 2058 2058 HOH HOH . N 7 HOH B 60 2059 2059 HOH HOH . N 7 HOH B 61 2060 2060 HOH HOH . N 7 HOH B 62 2061 2061 HOH HOH . N 7 HOH B 63 2062 2062 HOH HOH . N 7 HOH B 64 2063 2063 HOH HOH . N 7 HOH B 65 2064 2064 HOH HOH . N 7 HOH B 66 2065 2065 HOH HOH . N 7 HOH B 67 2066 2066 HOH HOH . N 7 HOH B 68 2067 2067 HOH HOH . N 7 HOH B 69 2068 2068 HOH HOH . N 7 HOH B 70 2069 2069 HOH HOH . N 7 HOH B 71 2070 2070 HOH HOH . N 7 HOH B 72 2071 2071 HOH HOH . N 7 HOH B 73 2072 2072 HOH HOH . N 7 HOH B 74 2073 2073 HOH HOH . N 7 HOH B 75 2074 2074 HOH HOH . N 7 HOH B 76 2075 2075 HOH HOH . N 7 HOH B 77 2076 2076 HOH HOH . N 7 HOH B 78 2077 2077 HOH HOH . N 7 HOH B 79 2078 2078 HOH HOH . N 7 HOH B 80 2079 2079 HOH HOH . N 7 HOH B 81 2080 2080 HOH HOH . N 7 HOH B 82 2081 2081 HOH HOH . N 7 HOH B 83 2082 2082 HOH HOH . N 7 HOH B 84 2083 2083 HOH HOH . N 7 HOH B 85 2084 2084 HOH HOH . N 7 HOH B 86 2085 2085 HOH HOH . N 7 HOH B 87 2086 2086 HOH HOH . N 7 HOH B 88 2087 2087 HOH HOH . N 7 HOH B 89 2088 2088 HOH HOH . N 7 HOH B 90 2089 2089 HOH HOH . N 7 HOH B 91 2090 2090 HOH HOH . N 7 HOH B 92 2091 2091 HOH HOH . N 7 HOH B 93 2092 2092 HOH HOH . N 7 HOH B 94 2093 2093 HOH HOH . N 7 HOH B 95 2096 2096 HOH HOH . N 7 HOH B 96 2097 2097 HOH HOH . N 7 HOH B 97 2098 2098 HOH HOH . N 7 HOH B 98 2099 2099 HOH HOH . N 7 HOH B 99 2100 2100 HOH HOH . N 7 HOH B 100 2101 2101 HOH HOH . N 7 HOH B 101 2102 2102 HOH HOH . N 7 HOH B 102 2103 2103 HOH HOH . N 7 HOH B 103 2104 2104 HOH HOH . N 7 HOH B 104 2105 2105 HOH HOH . N 7 HOH B 105 2106 2106 HOH HOH . N 7 HOH B 106 2107 2107 HOH HOH . N 7 HOH B 107 2108 2108 HOH HOH . N 7 HOH B 108 2109 2109 HOH HOH . N 7 HOH B 109 2110 2110 HOH HOH . N 7 HOH B 110 2111 2111 HOH HOH . N 7 HOH B 111 2112 2112 HOH HOH . N 7 HOH B 112 2113 2113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . F 5 113.755 112.217 32.002 1 61.67 ? N1 H4B 902 A 1 HETATM 2 C C2 H4B . . . F 5 114.993 112.71 32.217 1 62.02 ? C2 H4B 902 A 1 HETATM 3 N N2 H4B . . . F 5 115.828 113.07 31.251 1 60.34 ? N2 H4B 902 A 1 HETATM 4 N N3 H4B . . . F 5 115.432 112.855 33.48 1 60.79 ? N3 H4B 902 A 1 HETATM 5 C C4 H4B . . . F 5 114.714 112.536 34.568 1 61.13 ? C4 H4B 902 A 1 HETATM 6 O O4 H4B . . . F 5 115.238 112.716 35.65 1 63.07 ? O4 H4B 902 A 1 HETATM 7 C C4A H4B . . . F 5 113.4 112.008 34.426 1 61.17 ? C4A H4B 902 A 1 HETATM 8 C C8A H4B . . . F 5 112.974 111.874 33.042 1 61.07 ? C8A H4B 902 A 1 HETATM 9 N N5 H4B . . . F 5 112.534 111.616 35.408 1 59.79 ? N5 H4B 902 A 1 HETATM 10 N N8 H4B . . . F 5 111.743 111.387 32.768 1 60.26 ? N8 H4B 902 A 1 HETATM 11 C C6 H4B . . . F 5 111.526 110.606 35.021 1 59.67 ? C6 H4B 902 A 1 HETATM 12 C C7 H4B . . . F 5 110.835 111.027 33.775 1 60.03 ? C7 H4B 902 A 1 HETATM 13 C C9 H4B . . . F 5 110.694 110.256 36.294 1 58.69 ? C9 H4B 902 A 1 HETATM 14 O O9 H4B . . . F 5 110.23 111.474 36.885 1 59.76 ? O9 H4B 902 A 1 HETATM 15 C C10 H4B . . . F 5 109.453 109.39 36.047 1 57.94 ? C10 H4B 902 A 1 HETATM 16 C C11 H4B . . . F 5 108.474 108.92 37.105 1 57.6 ? C11 H4B 902 A 1 HETATM 17 O O10 H4B . . . F 5 109.881 108.225 35.307 1 57.98 ? O10 H4B 902 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 17 #