data_3E7S # _model_server_result.job_id xKhmc1mAPNqZZW1xCYI7Gg _model_server_result.datetime_utc '2024-11-24 12:31:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e7s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":907}' # _entry.id 3E7S # _exptl.entry_id 3E7S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 263.335 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ETHYL 4-[(4-METHYLPYRIDIN-2-YL)AMINO]PIPERIDINE-1-CARBOXYLATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3E7S _cell.length_a 58.93 _cell.length_b 104.37 _cell.length_c 156.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E7S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 40 A CYS 93 1_555 C ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc2 A SG CYS 45 A CYS 98 1_555 C ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc3 C ZN ZN . A ZN 903 1_555 B SG CYS 40 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc4 C ZN ZN . A ZN 903 1_555 B SG CYS 45 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc5 B SG CYS 130 B CYS 183 1_555 G FE HEC . B HEC 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? # _chem_comp.formula 'C14 H21 N3 O2' _chem_comp.formula_weight 263.335 _chem_comp.id AT2 _chem_comp.mon_nstd_flag . _chem_comp.name 'ETHYL 4-[(4-METHYLPYRIDIN-2-YL)AMINO]PIPERIDINE-1-CARBOXYLATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 AT2 sing 70 n n C1 H11 AT2 sing 71 n n C1 H12 AT2 sing 72 n n C1 H13 AT2 sing 73 n n C2 C3 AT2 sing 74 n y C2 C7 AT2 doub 75 n y C3 C4 AT2 doub 76 n y C3 H3 AT2 sing 77 n n C4 N5 AT2 sing 78 n y C4 H4 AT2 sing 79 n n C6 C7 AT2 sing 80 n y C6 N5 AT2 doub 81 n y C6 N8 AT2 sing 82 n n C7 H7 AT2 sing 83 n n C9 C10 AT2 sing 84 n n C9 N8 AT2 sing 85 n n C9 C14 AT2 sing 86 n n C9 H9 AT2 sing 87 n n C10 C11 AT2 sing 88 n n C10 H101 AT2 sing 89 n n C10 H102 AT2 sing 90 n n C11 N12 AT2 sing 91 n n C11 H111 AT2 sing 92 n n C11 H112 AT2 sing 93 n n N8 HN8 AT2 sing 94 n n N12 C13 AT2 sing 95 n n N12 C15 AT2 sing 96 n n C13 C14 AT2 sing 97 n n C13 H131 AT2 sing 98 n n C13 H132 AT2 sing 99 n n C14 H141 AT2 sing 100 n n C14 H142 AT2 sing 101 n n C15 O16 AT2 doub 102 n n C15 O17 AT2 sing 103 n n O17 C18 AT2 sing 104 n n C18 C19 AT2 sing 105 n n C18 H181 AT2 sing 106 n n C18 H182 AT2 sing 107 n n C19 H191 AT2 sing 108 n n C19 H192 AT2 sing 109 n n C19 H193 AT2 sing 110 n n # _atom_sites.entry_id 3E7S _atom_sites.fract_transf_matrix[1][1] 0.016969 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009581 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 903 903 ZN ZN . D 4 HEC A 1 901 901 HEC HEC . E 5 AT2 A 1 904 904 AT2 AT2 . F 5 AT2 A 1 905 905 AT2 AT2 . G 4 HEC B 1 902 902 HEC HEC . H 5 AT2 B 1 906 906 AT2 AT2 . I 5 AT2 B 1 907 907 AT2 AT2 . J 6 HOH A 1 906 1 HOH HOH . J 6 HOH A 2 907 2 HOH HOH . J 6 HOH A 3 908 3 HOH HOH . J 6 HOH A 4 909 4 HOH HOH . J 6 HOH A 5 910 5 HOH HOH . J 6 HOH A 6 911 6 HOH HOH . J 6 HOH A 7 912 7 HOH HOH . J 6 HOH A 8 913 8 HOH HOH . J 6 HOH A 9 914 9 HOH HOH . J 6 HOH A 10 915 10 HOH HOH . J 6 HOH A 11 916 12 HOH HOH . J 6 HOH A 12 917 13 HOH HOH . J 6 HOH A 13 918 14 HOH HOH . J 6 HOH A 14 919 15 HOH HOH . J 6 HOH A 15 920 16 HOH HOH . J 6 HOH A 16 921 17 HOH HOH . J 6 HOH A 17 922 18 HOH HOH . J 6 HOH A 18 923 19 HOH HOH . J 6 HOH A 19 924 20 HOH HOH . J 6 HOH A 20 925 21 HOH HOH . J 6 HOH A 21 926 22 HOH HOH . J 6 HOH A 22 927 23 HOH HOH . J 6 HOH A 23 928 24 HOH HOH . J 6 HOH A 24 929 25 HOH HOH . J 6 HOH A 25 930 26 HOH HOH . J 6 HOH A 26 931 27 HOH HOH . J 6 HOH A 27 932 28 HOH HOH . J 6 HOH A 28 933 29 HOH HOH . J 6 HOH A 29 934 30 HOH HOH . J 6 HOH A 30 935 31 HOH HOH . J 6 HOH A 31 936 32 HOH HOH . J 6 HOH A 32 937 33 HOH HOH . J 6 HOH A 33 938 34 HOH HOH . J 6 HOH A 34 939 35 HOH HOH . J 6 HOH A 35 940 36 HOH HOH . J 6 HOH A 36 941 37 HOH HOH . J 6 HOH A 37 942 38 HOH HOH . J 6 HOH A 38 943 39 HOH HOH . J 6 HOH A 39 944 40 HOH HOH . J 6 HOH A 40 945 41 HOH HOH . J 6 HOH A 41 946 42 HOH HOH . J 6 HOH A 42 947 43 HOH HOH . J 6 HOH A 43 948 44 HOH HOH . J 6 HOH A 44 949 45 HOH HOH . J 6 HOH A 45 950 46 HOH HOH . J 6 HOH A 46 951 47 HOH HOH . J 6 HOH A 47 952 48 HOH HOH . J 6 HOH A 48 953 50 HOH HOH . J 6 HOH A 49 954 51 HOH HOH . J 6 HOH A 50 955 52 HOH HOH . J 6 HOH A 51 956 54 HOH HOH . J 6 HOH A 52 957 55 HOH HOH . J 6 HOH A 53 958 56 HOH HOH . J 6 HOH A 54 959 57 HOH HOH . J 6 HOH A 55 960 58 HOH HOH . J 6 HOH A 56 961 59 HOH HOH . J 6 HOH A 57 962 60 HOH HOH . J 6 HOH A 58 963 62 HOH HOH . J 6 HOH A 59 964 63 HOH HOH . J 6 HOH A 60 965 64 HOH HOH . J 6 HOH A 61 966 66 HOH HOH . J 6 HOH A 62 967 67 HOH HOH . J 6 HOH A 63 968 68 HOH HOH . J 6 HOH A 64 969 69 HOH HOH . J 6 HOH A 65 970 70 HOH HOH . J 6 HOH A 66 971 71 HOH HOH . J 6 HOH A 67 972 72 HOH HOH . J 6 HOH A 68 973 73 HOH HOH . J 6 HOH A 69 974 74 HOH HOH . J 6 HOH A 70 975 75 HOH HOH . J 6 HOH A 71 976 76 HOH HOH . J 6 HOH A 72 977 119 HOH HOH . J 6 HOH A 73 978 175 HOH HOH . J 6 HOH A 74 979 184 HOH HOH . K 6 HOH B 1 908 11 HOH HOH . K 6 HOH B 2 909 49 HOH HOH . K 6 HOH B 3 910 53 HOH HOH . K 6 HOH B 4 911 61 HOH HOH . K 6 HOH B 5 912 65 HOH HOH . K 6 HOH B 6 913 77 HOH HOH . K 6 HOH B 7 914 78 HOH HOH . K 6 HOH B 8 915 79 HOH HOH . K 6 HOH B 9 916 80 HOH HOH . K 6 HOH B 10 917 81 HOH HOH . K 6 HOH B 11 918 82 HOH HOH . K 6 HOH B 12 919 83 HOH HOH . K 6 HOH B 13 920 101 HOH HOH . K 6 HOH B 14 921 102 HOH HOH . K 6 HOH B 15 922 103 HOH HOH . K 6 HOH B 16 923 104 HOH HOH . K 6 HOH B 17 924 105 HOH HOH . K 6 HOH B 18 925 106 HOH HOH . K 6 HOH B 19 926 107 HOH HOH . K 6 HOH B 20 927 108 HOH HOH . K 6 HOH B 21 928 109 HOH HOH . K 6 HOH B 22 929 110 HOH HOH . K 6 HOH B 23 930 111 HOH HOH . K 6 HOH B 24 931 112 HOH HOH . K 6 HOH B 25 932 113 HOH HOH . K 6 HOH B 26 933 114 HOH HOH . K 6 HOH B 27 934 115 HOH HOH . K 6 HOH B 28 935 116 HOH HOH . K 6 HOH B 29 936 117 HOH HOH . K 6 HOH B 30 937 118 HOH HOH . K 6 HOH B 31 938 120 HOH HOH . K 6 HOH B 32 939 121 HOH HOH . K 6 HOH B 33 940 122 HOH HOH . K 6 HOH B 34 941 123 HOH HOH . K 6 HOH B 35 942 124 HOH HOH . K 6 HOH B 36 943 125 HOH HOH . K 6 HOH B 37 944 126 HOH HOH . K 6 HOH B 38 945 127 HOH HOH . K 6 HOH B 39 946 128 HOH HOH . K 6 HOH B 40 947 129 HOH HOH . K 6 HOH B 41 948 130 HOH HOH . K 6 HOH B 42 949 131 HOH HOH . K 6 HOH B 43 950 132 HOH HOH . K 6 HOH B 44 951 133 HOH HOH . K 6 HOH B 45 952 134 HOH HOH . K 6 HOH B 46 953 135 HOH HOH . K 6 HOH B 47 954 136 HOH HOH . K 6 HOH B 48 955 137 HOH HOH . K 6 HOH B 49 956 138 HOH HOH . K 6 HOH B 50 957 139 HOH HOH . K 6 HOH B 51 958 140 HOH HOH . K 6 HOH B 52 959 141 HOH HOH . K 6 HOH B 53 960 142 HOH HOH . K 6 HOH B 54 961 143 HOH HOH . K 6 HOH B 55 962 144 HOH HOH . K 6 HOH B 56 963 145 HOH HOH . K 6 HOH B 57 964 146 HOH HOH . K 6 HOH B 58 965 147 HOH HOH . K 6 HOH B 59 966 148 HOH HOH . K 6 HOH B 60 967 149 HOH HOH . K 6 HOH B 61 968 150 HOH HOH . K 6 HOH B 62 969 151 HOH HOH . K 6 HOH B 63 970 152 HOH HOH . K 6 HOH B 64 971 153 HOH HOH . K 6 HOH B 65 972 154 HOH HOH . K 6 HOH B 66 973 155 HOH HOH . K 6 HOH B 67 974 156 HOH HOH . K 6 HOH B 68 975 157 HOH HOH . K 6 HOH B 69 976 158 HOH HOH . K 6 HOH B 70 977 159 HOH HOH . K 6 HOH B 71 978 160 HOH HOH . K 6 HOH B 72 979 161 HOH HOH . K 6 HOH B 73 980 162 HOH HOH . K 6 HOH B 74 981 163 HOH HOH . K 6 HOH B 75 982 164 HOH HOH . K 6 HOH B 76 983 165 HOH HOH . K 6 HOH B 77 984 166 HOH HOH . K 6 HOH B 78 985 167 HOH HOH . K 6 HOH B 79 986 169 HOH HOH . K 6 HOH B 80 987 170 HOH HOH . K 6 HOH B 81 988 171 HOH HOH . K 6 HOH B 82 989 172 HOH HOH . K 6 HOH B 83 990 173 HOH HOH . K 6 HOH B 84 991 174 HOH HOH . K 6 HOH B 85 992 176 HOH HOH . K 6 HOH B 86 993 185 HOH HOH . K 6 HOH B 87 994 186 HOH HOH . K 6 HOH B 88 995 187 HOH HOH . K 6 HOH B 89 996 188 HOH HOH . K 6 HOH B 90 997 189 HOH HOH . K 6 HOH B 91 998 190 HOH HOH . K 6 HOH B 92 999 191 HOH HOH . K 6 HOH B 93 1000 192 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AT2 . . . I 5 10.423 40.003 32.6 1 26.7 ? C1 AT2 907 B 1 HETATM 2 C C2 AT2 . . . I 5 9.684 39.796 33.89 1 24.41 ? C2 AT2 907 B 1 HETATM 3 C C3 AT2 . . . I 5 8.515 40.583 34.23 1 25.12 ? C3 AT2 907 B 1 HETATM 4 C C4 AT2 . . . I 5 7.819 40.366 35.528 1 23.67 ? C4 AT2 907 B 1 HETATM 5 C C6 AT2 . . . I 5 9.536 38.573 36.044 1 25.4 ? C6 AT2 907 B 1 HETATM 6 C C7 AT2 . . . I 5 10.192 38.829 34.732 1 25.22 ? C7 AT2 907 B 1 HETATM 7 C C9 AT2 . . . I 5 10.956 36.69 37.235 1 34.89 ? C9 AT2 907 B 1 HETATM 8 C C10 AT2 . . . I 5 10.744 35.161 36.95 1 39.63 ? C10 AT2 907 B 1 HETATM 9 C C11 AT2 . . . I 5 11.764 34.474 37.946 1 40.06 ? C11 AT2 907 B 1 HETATM 10 N N5 AT2 . . . I 5 8.378 39.348 36.397 1 23.35 ? N5 AT2 907 B 1 HETATM 11 N N8 AT2 . . . I 5 9.903 37.678 37.023 1 30.57 ? N8 AT2 907 B 1 HETATM 12 N N12 AT2 . . . I 5 13.139 35.227 38.129 1 39.96 ? N12 AT2 907 B 1 HETATM 13 C C13 AT2 . . . I 5 13.458 36.551 37.335 1 38.8 ? C13 AT2 907 B 1 HETATM 14 C C14 AT2 . . . I 5 12.326 37.066 36.554 1 38.7 ? C14 AT2 907 B 1 HETATM 15 C C15 AT2 . . . I 5 14.067 34.749 39.004 1 39.96 ? C15 AT2 907 B 1 HETATM 16 O O16 AT2 . . . I 5 13.792 33.682 39.665 1 42.2 ? O16 AT2 907 B 1 HETATM 17 O O17 AT2 . . . I 5 15.21 35.45 39.133 1 38.44 ? O17 AT2 907 B 1 HETATM 18 C C18 AT2 . . . I 5 16.202 35.018 40.05 1 38.32 ? C18 AT2 907 B 1 HETATM 19 C C19 AT2 . . . I 5 17.297 36.061 39.945 1 39.86 ? C19 AT2 907 B 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 19 #