data_3E7X # _model_server_result.job_id 2ASHGxhiehxGUzKo56--tQ _model_server_result.datetime_utc '2025-03-09 04:12:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e7x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":512}' # _entry.id 3E7X # _exptl.entry_id 3E7X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3E7X _cell.length_a 45.765 _cell.length_b 91.389 _cell.length_c 121.471 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E7X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 3E7X _atom_sites.fract_transf_matrix[1][1] 0.021851 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010942 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008232 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 512 1 AMP AMP . C 3 HOH A 1 513 1 HOH HOH . C 3 HOH A 2 514 2 HOH HOH . C 3 HOH A 3 515 3 HOH HOH . C 3 HOH A 4 516 4 HOH HOH . C 3 HOH A 5 517 5 HOH HOH . C 3 HOH A 6 518 6 HOH HOH . C 3 HOH A 7 519 7 HOH HOH . C 3 HOH A 8 520 8 HOH HOH . C 3 HOH A 9 521 9 HOH HOH . C 3 HOH A 10 522 10 HOH HOH . C 3 HOH A 11 523 11 HOH HOH . C 3 HOH A 12 524 12 HOH HOH . C 3 HOH A 13 525 13 HOH HOH . C 3 HOH A 14 526 14 HOH HOH . C 3 HOH A 15 527 15 HOH HOH . C 3 HOH A 16 528 16 HOH HOH . C 3 HOH A 17 529 17 HOH HOH . C 3 HOH A 18 530 18 HOH HOH . C 3 HOH A 19 531 19 HOH HOH . C 3 HOH A 20 532 20 HOH HOH . C 3 HOH A 21 533 21 HOH HOH . C 3 HOH A 22 534 22 HOH HOH . C 3 HOH A 23 535 23 HOH HOH . C 3 HOH A 24 536 24 HOH HOH . C 3 HOH A 25 537 25 HOH HOH . C 3 HOH A 26 538 26 HOH HOH . C 3 HOH A 27 539 27 HOH HOH . C 3 HOH A 28 540 28 HOH HOH . C 3 HOH A 29 541 29 HOH HOH . C 3 HOH A 30 542 30 HOH HOH . C 3 HOH A 31 543 31 HOH HOH . C 3 HOH A 32 544 32 HOH HOH . C 3 HOH A 33 545 33 HOH HOH . C 3 HOH A 34 546 34 HOH HOH . C 3 HOH A 35 547 35 HOH HOH . C 3 HOH A 36 548 36 HOH HOH . C 3 HOH A 37 549 37 HOH HOH . C 3 HOH A 38 550 38 HOH HOH . C 3 HOH A 39 551 39 HOH HOH . C 3 HOH A 40 552 40 HOH HOH . C 3 HOH A 41 553 41 HOH HOH . C 3 HOH A 42 554 42 HOH HOH . C 3 HOH A 43 555 43 HOH HOH . C 3 HOH A 44 556 44 HOH HOH . C 3 HOH A 45 557 45 HOH HOH . C 3 HOH A 46 558 46 HOH HOH . C 3 HOH A 47 559 47 HOH HOH . C 3 HOH A 48 560 48 HOH HOH . C 3 HOH A 49 561 49 HOH HOH . C 3 HOH A 50 562 50 HOH HOH . C 3 HOH A 51 563 51 HOH HOH . C 3 HOH A 52 564 52 HOH HOH . C 3 HOH A 53 565 53 HOH HOH . C 3 HOH A 54 566 54 HOH HOH . C 3 HOH A 55 567 55 HOH HOH . C 3 HOH A 56 568 56 HOH HOH . C 3 HOH A 57 569 57 HOH HOH . C 3 HOH A 58 570 58 HOH HOH . C 3 HOH A 59 571 59 HOH HOH . C 3 HOH A 60 572 60 HOH HOH . C 3 HOH A 61 573 61 HOH HOH . C 3 HOH A 62 574 62 HOH HOH . C 3 HOH A 63 575 63 HOH HOH . C 3 HOH A 64 576 64 HOH HOH . C 3 HOH A 65 577 65 HOH HOH . C 3 HOH A 66 578 66 HOH HOH . C 3 HOH A 67 579 67 HOH HOH . C 3 HOH A 68 580 68 HOH HOH . C 3 HOH A 69 581 69 HOH HOH . C 3 HOH A 70 582 70 HOH HOH . C 3 HOH A 71 583 71 HOH HOH . C 3 HOH A 72 584 72 HOH HOH . C 3 HOH A 73 585 73 HOH HOH . C 3 HOH A 74 586 74 HOH HOH . C 3 HOH A 75 587 75 HOH HOH . C 3 HOH A 76 588 76 HOH HOH . C 3 HOH A 77 589 77 HOH HOH . C 3 HOH A 78 590 78 HOH HOH . C 3 HOH A 79 591 79 HOH HOH . C 3 HOH A 80 592 80 HOH HOH . C 3 HOH A 81 593 81 HOH HOH . C 3 HOH A 82 594 82 HOH HOH . C 3 HOH A 83 595 83 HOH HOH . C 3 HOH A 84 596 84 HOH HOH . C 3 HOH A 85 597 85 HOH HOH . C 3 HOH A 86 598 86 HOH HOH . C 3 HOH A 87 599 87 HOH HOH . C 3 HOH A 88 600 88 HOH HOH . C 3 HOH A 89 601 89 HOH HOH . C 3 HOH A 90 602 90 HOH HOH . C 3 HOH A 91 603 91 HOH HOH . C 3 HOH A 92 604 92 HOH HOH . C 3 HOH A 93 605 93 HOH HOH . C 3 HOH A 94 606 94 HOH HOH . C 3 HOH A 95 607 95 HOH HOH . C 3 HOH A 96 608 96 HOH HOH . C 3 HOH A 97 609 97 HOH HOH . C 3 HOH A 98 610 98 HOH HOH . C 3 HOH A 99 611 99 HOH HOH . C 3 HOH A 100 612 100 HOH HOH . C 3 HOH A 101 613 101 HOH HOH . C 3 HOH A 102 614 102 HOH HOH . C 3 HOH A 103 615 103 HOH HOH . C 3 HOH A 104 616 104 HOH HOH . C 3 HOH A 105 617 105 HOH HOH . C 3 HOH A 106 618 106 HOH HOH . C 3 HOH A 107 619 107 HOH HOH . C 3 HOH A 108 620 108 HOH HOH . C 3 HOH A 109 621 109 HOH HOH . C 3 HOH A 110 622 110 HOH HOH . C 3 HOH A 111 623 111 HOH HOH . C 3 HOH A 112 624 112 HOH HOH . C 3 HOH A 113 625 113 HOH HOH . C 3 HOH A 114 626 114 HOH HOH . C 3 HOH A 115 627 115 HOH HOH . C 3 HOH A 116 628 116 HOH HOH . C 3 HOH A 117 629 117 HOH HOH . C 3 HOH A 118 630 118 HOH HOH . C 3 HOH A 119 631 119 HOH HOH . C 3 HOH A 120 632 120 HOH HOH . C 3 HOH A 121 633 121 HOH HOH . C 3 HOH A 122 634 122 HOH HOH . C 3 HOH A 123 635 123 HOH HOH . C 3 HOH A 124 636 124 HOH HOH . C 3 HOH A 125 637 125 HOH HOH . C 3 HOH A 126 638 126 HOH HOH . C 3 HOH A 127 639 127 HOH HOH . C 3 HOH A 128 640 128 HOH HOH . C 3 HOH A 129 641 129 HOH HOH . C 3 HOH A 130 642 130 HOH HOH . C 3 HOH A 131 643 131 HOH HOH . C 3 HOH A 132 644 132 HOH HOH . C 3 HOH A 133 645 133 HOH HOH . C 3 HOH A 134 646 134 HOH HOH . C 3 HOH A 135 647 135 HOH HOH . C 3 HOH A 136 648 136 HOH HOH . C 3 HOH A 137 649 137 HOH HOH . C 3 HOH A 138 650 138 HOH HOH . C 3 HOH A 139 651 139 HOH HOH . C 3 HOH A 140 652 140 HOH HOH . C 3 HOH A 141 653 141 HOH HOH . C 3 HOH A 142 654 142 HOH HOH . C 3 HOH A 143 655 143 HOH HOH . C 3 HOH A 144 656 144 HOH HOH . C 3 HOH A 145 657 145 HOH HOH . C 3 HOH A 146 658 146 HOH HOH . C 3 HOH A 147 659 147 HOH HOH . C 3 HOH A 148 660 148 HOH HOH . C 3 HOH A 149 661 149 HOH HOH . C 3 HOH A 150 662 150 HOH HOH . C 3 HOH A 151 663 151 HOH HOH . C 3 HOH A 152 664 152 HOH HOH . C 3 HOH A 153 665 153 HOH HOH . C 3 HOH A 154 666 154 HOH HOH . C 3 HOH A 155 667 155 HOH HOH . C 3 HOH A 156 668 156 HOH HOH . C 3 HOH A 157 669 157 HOH HOH . C 3 HOH A 158 670 158 HOH HOH . C 3 HOH A 159 671 159 HOH HOH . C 3 HOH A 160 672 160 HOH HOH . C 3 HOH A 161 673 161 HOH HOH . C 3 HOH A 162 674 162 HOH HOH . C 3 HOH A 163 675 163 HOH HOH . C 3 HOH A 164 676 164 HOH HOH . C 3 HOH A 165 677 165 HOH HOH . C 3 HOH A 166 678 166 HOH HOH . C 3 HOH A 167 679 167 HOH HOH . C 3 HOH A 168 680 168 HOH HOH . C 3 HOH A 169 681 169 HOH HOH . C 3 HOH A 170 682 170 HOH HOH . C 3 HOH A 171 683 171 HOH HOH . C 3 HOH A 172 684 172 HOH HOH . C 3 HOH A 173 685 173 HOH HOH . C 3 HOH A 174 686 174 HOH HOH . C 3 HOH A 175 687 175 HOH HOH . C 3 HOH A 176 688 176 HOH HOH . C 3 HOH A 177 689 177 HOH HOH . C 3 HOH A 178 690 178 HOH HOH . C 3 HOH A 179 691 179 HOH HOH . C 3 HOH A 180 692 180 HOH HOH . C 3 HOH A 181 693 181 HOH HOH . C 3 HOH A 182 694 182 HOH HOH . C 3 HOH A 183 695 183 HOH HOH . C 3 HOH A 184 696 184 HOH HOH . C 3 HOH A 185 697 185 HOH HOH . C 3 HOH A 186 698 186 HOH HOH . C 3 HOH A 187 699 187 HOH HOH . C 3 HOH A 188 700 188 HOH HOH . C 3 HOH A 189 701 189 HOH HOH . C 3 HOH A 190 702 190 HOH HOH . C 3 HOH A 191 703 191 HOH HOH . C 3 HOH A 192 704 192 HOH HOH . C 3 HOH A 193 705 193 HOH HOH . C 3 HOH A 194 706 194 HOH HOH . C 3 HOH A 195 707 195 HOH HOH . C 3 HOH A 196 708 196 HOH HOH . C 3 HOH A 197 709 197 HOH HOH . C 3 HOH A 198 710 198 HOH HOH . C 3 HOH A 199 711 199 HOH HOH . C 3 HOH A 200 712 200 HOH HOH . C 3 HOH A 201 713 201 HOH HOH . C 3 HOH A 202 714 202 HOH HOH . C 3 HOH A 203 715 203 HOH HOH . C 3 HOH A 204 716 204 HOH HOH . C 3 HOH A 205 717 205 HOH HOH . C 3 HOH A 206 718 206 HOH HOH . C 3 HOH A 207 719 207 HOH HOH . C 3 HOH A 208 720 208 HOH HOH . C 3 HOH A 209 721 209 HOH HOH . C 3 HOH A 210 722 210 HOH HOH . C 3 HOH A 211 723 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 14.662 42.823 26.395 1 17.26 ? P AMP 512 A 1 HETATM 2 O O1P AMP . . . B 2 14.592 43.36 25.018 1 16.7 ? O1P AMP 512 A 1 HETATM 3 O O2P AMP . . . B 2 16.173 42.501 26.848 1 19.68 ? O2P AMP 512 A 1 HETATM 4 O O3P AMP . . . B 2 13.838 41.446 26.542 1 14.63 ? O3P AMP 512 A 1 HETATM 5 O O5' AMP . . . B 2 14.087 43.842 27.501 1 17.4 ? O5' AMP 512 A 1 HETATM 6 C C5' AMP . . . B 2 12.741 44.309 27.398 1 15.05 ? C5' AMP 512 A 1 HETATM 7 C C4' AMP . . . B 2 12.517 45.484 28.35 1 15.87 ? C4' AMP 512 A 1 HETATM 8 O O4' AMP . . . B 2 13.332 46.621 28.018 1 16.98 ? O4' AMP 512 A 1 HETATM 9 C C3' AMP . . . B 2 11.082 46.004 28.275 1 16.13 ? C3' AMP 512 A 1 HETATM 10 O O3' AMP . . . B 2 10.232 45.143 29.038 1 14.97 ? O3' AMP 512 A 1 HETATM 11 C C2' AMP . . . B 2 11.307 47.318 29.021 1 16.21 ? C2' AMP 512 A 1 HETATM 12 O O2' AMP . . . B 2 11.612 47.063 30.395 1 13.42 ? O2' AMP 512 A 1 HETATM 13 C C1' AMP . . . B 2 12.565 47.809 28.298 1 16.13 ? C1' AMP 512 A 1 HETATM 14 N N9 AMP . . . B 2 12.205 48.435 27.004 1 16.04 ? N9 AMP 512 A 1 HETATM 15 C C8 AMP . . . B 2 12.17 47.828 25.819 1 15.33 ? C8 AMP 512 A 1 HETATM 16 N N7 AMP . . . B 2 11.882 48.714 24.869 1 16.12 ? N7 AMP 512 A 1 HETATM 17 C C5 AMP . . . B 2 11.73 49.901 25.449 1 17.47 ? C5 AMP 512 A 1 HETATM 18 C C6 AMP . . . B 2 11.453 51.18 24.981 1 16.78 ? C6 AMP 512 A 1 HETATM 19 N N6 AMP . . . B 2 11.316 51.411 23.679 1 15.21 ? N6 AMP 512 A 1 HETATM 20 N N1 AMP . . . B 2 11.37 52.19 25.859 1 15.22 ? N1 AMP 512 A 1 HETATM 21 C C2 AMP . . . B 2 11.551 51.98 27.152 1 16.2 ? C2 AMP 512 A 1 HETATM 22 N N3 AMP . . . B 2 11.825 50.777 27.63 1 18.1 ? N3 AMP 512 A 1 HETATM 23 C C4 AMP . . . B 2 11.924 49.722 26.812 1 17.11 ? C4 AMP 512 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #