data_3E85 # _model_server_result.job_id 1f4o4V1CGymGrtsozHzvew _model_server_result.datetime_utc '2024-11-25 04:31:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e85 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":160}' # _entry.id 3E85 # _exptl.entry_id 3E85 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 212.247 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,3-DIPHENYLUREA _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3E85 _cell.length_a 34.362 _cell.length_b 73.256 _cell.length_c 99.956 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E85 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 32 A PRO 31 1_555 F NA NA . A NA 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc2 A O VAL 35 A VAL 34 1_555 F NA NA . A NA 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc3 A O ILE 38 A ILE 37 1_555 F NA NA . A NA 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc4 A O THR 122 A THR 121 1_555 G NA NA . A NA 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? metalc ? metalc5 A OG1 THR 122 A THR 121 1_555 G NA NA . A NA 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc6 A O GLY 124 A GLY 123 1_555 G NA NA . A NA 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc7 F NA NA . A NA 162 1_555 H O HOH . A HOH 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc8 F NA NA . A NA 162 1_555 H O HOH . A HOH 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc9 F NA NA . A NA 162 1_555 H O HOH . A HOH 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc10 G NA NA . A NA 163 1_555 H O HOH . A HOH 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc11 G NA NA . A NA 163 1_555 H O HOH . A HOH 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc12 G NA NA . A NA 163 1_555 H O HOH . A HOH 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? # _chem_comp.formula 'C13 H12 N2 O' _chem_comp.formula_weight 212.247 _chem_comp.id BSU _chem_comp.mon_nstd_flag . _chem_comp.name 1,3-DIPHENYLUREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DIPHENYLCARBAMIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N7 C8 BSU sing 70 n n N7 C5 BSU sing 71 n n N7 H22 BSU sing 72 n n C8 N9 BSU sing 73 n n C8 O11 BSU doub 74 n n N9 C10 BSU sing 75 n n N9 H23 BSU sing 76 n n C5 C4 BSU doub 77 n y C5 C6 BSU sing 78 n y C4 C3 BSU sing 79 n y C4 H41 BSU sing 80 n n C3 C2 BSU doub 81 n y C3 H31 BSU sing 82 n n C2 C1 BSU sing 83 n y C2 H21 BSU sing 84 n n C1 C6 BSU doub 85 n y C1 H11 BSU sing 86 n n C6 H61 BSU sing 87 n n C10 C16 BSU doub 88 n y C10 C12 BSU sing 89 n y C16 C15 BSU sing 90 n y C16 H161 BSU sing 91 n n C15 C14 BSU doub 92 n y C15 H151 BSU sing 93 n n C14 C13 BSU sing 94 n y C14 H141 BSU sing 95 n n C13 C12 BSU doub 96 n y C13 H131 BSU sing 97 n n C12 H121 BSU sing 98 n n # _atom_sites.entry_id 3E85 _atom_sites.fract_transf_matrix[1][1] 0.029102 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013651 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BSU A 1 158 1 BSU BSU . C 2 BSU A 1 159 2 BSU BSU . D 2 BSU A 1 160 3 BSU BSU . E 2 BSU A 1 161 4 BSU BSU . F 3 NA A 1 162 1 NA NA . G 3 NA A 1 163 2 NA NA . H 4 HOH A 1 164 1 HOH HOH . H 4 HOH A 2 165 2 HOH HOH . H 4 HOH A 3 166 3 HOH HOH . H 4 HOH A 4 167 4 HOH HOH . H 4 HOH A 5 168 5 HOH HOH . H 4 HOH A 6 169 6 HOH HOH . H 4 HOH A 7 170 7 HOH HOH . H 4 HOH A 8 171 8 HOH HOH . H 4 HOH A 9 172 9 HOH HOH . H 4 HOH A 10 173 10 HOH HOH . H 4 HOH A 11 174 11 HOH HOH . H 4 HOH A 12 175 12 HOH HOH . H 4 HOH A 13 176 13 HOH HOH . H 4 HOH A 14 177 14 HOH HOH . H 4 HOH A 15 178 15 HOH HOH . H 4 HOH A 16 179 16 HOH HOH . H 4 HOH A 17 180 17 HOH HOH . H 4 HOH A 18 181 18 HOH HOH . H 4 HOH A 19 182 19 HOH HOH . H 4 HOH A 20 183 20 HOH HOH . H 4 HOH A 21 184 21 HOH HOH . H 4 HOH A 22 185 22 HOH HOH . H 4 HOH A 23 186 23 HOH HOH . H 4 HOH A 24 187 24 HOH HOH . H 4 HOH A 25 188 25 HOH HOH . H 4 HOH A 26 189 26 HOH HOH . H 4 HOH A 27 190 27 HOH HOH . H 4 HOH A 28 191 28 HOH HOH . H 4 HOH A 29 192 29 HOH HOH . H 4 HOH A 30 193 30 HOH HOH . H 4 HOH A 31 194 31 HOH HOH . H 4 HOH A 32 195 32 HOH HOH . H 4 HOH A 33 196 33 HOH HOH . H 4 HOH A 34 197 34 HOH HOH . H 4 HOH A 35 198 35 HOH HOH . H 4 HOH A 36 199 36 HOH HOH . H 4 HOH A 37 200 37 HOH HOH . H 4 HOH A 38 201 38 HOH HOH . H 4 HOH A 39 202 39 HOH HOH . H 4 HOH A 40 203 40 HOH HOH . H 4 HOH A 41 204 41 HOH HOH . H 4 HOH A 42 205 42 HOH HOH . H 4 HOH A 43 206 43 HOH HOH . H 4 HOH A 44 207 44 HOH HOH . H 4 HOH A 45 208 45 HOH HOH . H 4 HOH A 46 209 46 HOH HOH . H 4 HOH A 47 210 47 HOH HOH . H 4 HOH A 48 211 48 HOH HOH . H 4 HOH A 49 212 49 HOH HOH . H 4 HOH A 50 213 50 HOH HOH . H 4 HOH A 51 214 51 HOH HOH . H 4 HOH A 52 215 52 HOH HOH . H 4 HOH A 53 216 53 HOH HOH . H 4 HOH A 54 217 54 HOH HOH . H 4 HOH A 55 218 55 HOH HOH . H 4 HOH A 56 219 56 HOH HOH . H 4 HOH A 57 220 57 HOH HOH . H 4 HOH A 58 221 58 HOH HOH . H 4 HOH A 59 222 59 HOH HOH . H 4 HOH A 60 223 60 HOH HOH . H 4 HOH A 61 224 61 HOH HOH . H 4 HOH A 62 225 62 HOH HOH . H 4 HOH A 63 226 63 HOH HOH . H 4 HOH A 64 227 64 HOH HOH . H 4 HOH A 65 228 65 HOH HOH . H 4 HOH A 66 229 66 HOH HOH . H 4 HOH A 67 230 67 HOH HOH . H 4 HOH A 68 231 68 HOH HOH . H 4 HOH A 69 232 69 HOH HOH . H 4 HOH A 70 233 70 HOH HOH . H 4 HOH A 71 234 71 HOH HOH . H 4 HOH A 72 235 72 HOH HOH . H 4 HOH A 73 236 73 HOH HOH . H 4 HOH A 74 237 74 HOH HOH . H 4 HOH A 75 238 75 HOH HOH . H 4 HOH A 76 239 76 HOH HOH . H 4 HOH A 77 240 77 HOH HOH . H 4 HOH A 78 241 78 HOH HOH . H 4 HOH A 79 242 79 HOH HOH . H 4 HOH A 80 243 80 HOH HOH . H 4 HOH A 81 244 81 HOH HOH . H 4 HOH A 82 245 82 HOH HOH . H 4 HOH A 83 246 83 HOH HOH . H 4 HOH A 84 247 84 HOH HOH . H 4 HOH A 85 248 85 HOH HOH . H 4 HOH A 86 249 86 HOH HOH . H 4 HOH A 87 250 87 HOH HOH . H 4 HOH A 88 251 88 HOH HOH . H 4 HOH A 89 252 89 HOH HOH . H 4 HOH A 90 253 90 HOH HOH . H 4 HOH A 91 254 91 HOH HOH . H 4 HOH A 92 255 92 HOH HOH . H 4 HOH A 93 256 93 HOH HOH . H 4 HOH A 94 257 94 HOH HOH . H 4 HOH A 95 258 95 HOH HOH . H 4 HOH A 96 259 96 HOH HOH . H 4 HOH A 97 260 97 HOH HOH . H 4 HOH A 98 261 98 HOH HOH . H 4 HOH A 99 262 99 HOH HOH . H 4 HOH A 100 263 100 HOH HOH . H 4 HOH A 101 264 101 HOH HOH . H 4 HOH A 102 265 102 HOH HOH . H 4 HOH A 103 266 103 HOH HOH . H 4 HOH A 104 267 104 HOH HOH . H 4 HOH A 105 268 105 HOH HOH . H 4 HOH A 106 269 106 HOH HOH . H 4 HOH A 107 270 107 HOH HOH . H 4 HOH A 108 271 108 HOH HOH . H 4 HOH A 109 272 109 HOH HOH . H 4 HOH A 110 273 110 HOH HOH . H 4 HOH A 111 274 111 HOH HOH . H 4 HOH A 112 275 112 HOH HOH . H 4 HOH A 113 276 113 HOH HOH . H 4 HOH A 114 277 114 HOH HOH . H 4 HOH A 115 278 115 HOH HOH . H 4 HOH A 116 279 116 HOH HOH . H 4 HOH A 117 280 117 HOH HOH . H 4 HOH A 118 281 118 HOH HOH . H 4 HOH A 119 282 119 HOH HOH . H 4 HOH A 120 283 120 HOH HOH . H 4 HOH A 121 284 121 HOH HOH . H 4 HOH A 122 285 122 HOH HOH . H 4 HOH A 123 286 123 HOH HOH . H 4 HOH A 124 287 124 HOH HOH . H 4 HOH A 125 288 125 HOH HOH . H 4 HOH A 126 289 126 HOH HOH . H 4 HOH A 127 290 127 HOH HOH . H 4 HOH A 128 291 128 HOH HOH . H 4 HOH A 129 292 129 HOH HOH . H 4 HOH A 130 293 130 HOH HOH . H 4 HOH A 131 294 131 HOH HOH . H 4 HOH A 132 295 132 HOH HOH . H 4 HOH A 133 296 133 HOH HOH . H 4 HOH A 134 297 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N7 BSU . . . D 2 16.145 14.612 64.916 1 27.18 ? N7 BSU 160 A 1 HETATM 2 C C8 BSU . . . D 2 15.77 13.348 65.072 1 32.64 ? C8 BSU 160 A 1 HETATM 3 N N9 BSU . . . D 2 15.519 12.573 64.003 1 39.58 ? N9 BSU 160 A 1 HETATM 4 O O11 BSU . . . D 2 15.621 12.884 66.181 1 48.31 ? O11 BSU 160 A 1 HETATM 5 C C5 BSU . . . D 2 16.399 15.383 63.749 1 21.23 ? C5 BSU 160 A 1 HETATM 6 C C4 BSU . . . D 2 17.682 15.738 63.439 1 34.49 ? C4 BSU 160 A 1 HETATM 7 C C3 BSU . . . D 2 17.967 16.52 62.326 1 29.41 ? C3 BSU 160 A 1 HETATM 8 C C2 BSU . . . D 2 16.961 16.944 61.554 1 20.26 ? C2 BSU 160 A 1 HETATM 9 C C1 BSU . . . D 2 15.676 16.627 61.905 1 23.87 ? C1 BSU 160 A 1 HETATM 10 C C6 BSU . . . D 2 15.395 15.836 62.978 1 25.5 ? C6 BSU 160 A 1 HETATM 11 C C10 BSU . . . D 2 15.116 11.211 64.102 1 38.9 ? C10 BSU 160 A 1 HETATM 12 C C16 BSU . . . D 2 16.001 10.329 64.687 1 41.71 ? C16 BSU 160 A 1 HETATM 13 C C15 BSU . . . D 2 15.658 8.994 64.809 1 42.46 ? C15 BSU 160 A 1 HETATM 14 C C14 BSU . . . D 2 14.458 8.494 64.369 1 36 ? C14 BSU 160 A 1 HETATM 15 C C13 BSU . . . D 2 13.592 9.379 63.795 1 42.31 ? C13 BSU 160 A 1 HETATM 16 C C12 BSU . . . D 2 13.92 10.723 63.654 1 42.67 ? C12 BSU 160 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #