data_3E86
#
_model_server_result.job_id            8QEP-3MykHWUykZW9Ly2_g 
_model_server_result.datetime_utc      '2025-09-04 08:17:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3e86 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":7}' 
#
_entry.id    3E86 
#
_exptl.entry_id    3E86 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3E86 
_cell.length_a            68.03 
_cell.length_b            68.03 
_cell.length_c            89.264 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3E86 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,L 1 1,2,3,4 
B,H,I,J,K,M 2 1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -68.03 -68.03 0 
3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -68.03 0 0 
4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -68.03 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
? 5 J N N 
? 5 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E CA CA . A CA 3 1_555 A O GLY 49 A GLY 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc2 F NA NA . A NA 4 1_555 A O VAL 46 A VAL 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? 
metalc ? metalc3 G NA NA . A NA 5 1_555 A OG1 THR 45 A THR 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc4 G NA NA . A NA 5 1_555 L O HOH . A HOH 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? 
metalc ? metalc5 J NA NA . B NA 6 1_555 B OG1 THR 45 B THR 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc6 J NA NA . B NA 6 1_555 M O HOH . B HOH 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3E86 
_atom_sites.fract_transf_matrix[1][1]    0.014699 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014699 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011203 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MPD A 1 501 501 MPD MPD . 
D 3 CS A 1 1 1 CS CS . 
E 4 CA A 1 3 3 CA CA . 
F 5 NA A 1 4 4 NA NA . 
G 5 NA A 1 5 5 NA NA . 
H 3 CS B 1 2 2 CS CS . 
I 2 MPD B 1 502 502 MPD MPD . 
J 5 NA B 1 6 6 NA NA . 
K 5 NA B 1 7 7 NA NA . 
L 6 HOH A 1 502 502 HOH HOH . 
L 6 HOH A 2 503 503 HOH HOH . 
L 6 HOH A 3 504 504 HOH HOH . 
L 6 HOH A 4 505 505 HOH HOH . 
L 6 HOH A 5 506 506 HOH HOH . 
L 6 HOH A 6 507 507 HOH HOH . 
L 6 HOH A 7 508 508 HOH HOH . 
L 6 HOH A 8 509 509 HOH HOH . 
L 6 HOH A 9 510 510 HOH HOH . 
L 6 HOH A 10 511 511 HOH HOH . 
L 6 HOH A 11 512 512 HOH HOH . 
L 6 HOH A 12 513 513 HOH HOH . 
L 6 HOH A 13 514 514 HOH HOH . 
L 6 HOH A 14 515 515 HOH HOH . 
L 6 HOH A 15 516 516 HOH HOH . 
L 6 HOH A 16 517 517 HOH HOH . 
L 6 HOH A 17 518 518 HOH HOH . 
L 6 HOH A 18 519 519 HOH HOH . 
L 6 HOH A 19 520 520 HOH HOH . 
L 6 HOH A 20 521 521 HOH HOH . 
L 6 HOH A 21 522 522 HOH HOH . 
L 6 HOH A 22 523 523 HOH HOH . 
L 6 HOH A 23 524 524 HOH HOH . 
L 6 HOH A 24 525 525 HOH HOH . 
L 6 HOH A 25 526 526 HOH HOH . 
L 6 HOH A 26 527 527 HOH HOH . 
L 6 HOH A 27 528 528 HOH HOH . 
L 6 HOH A 28 529 529 HOH HOH . 
L 6 HOH A 29 530 530 HOH HOH . 
L 6 HOH A 30 531 531 HOH HOH . 
L 6 HOH A 31 532 532 HOH HOH . 
L 6 HOH A 32 533 533 HOH HOH . 
L 6 HOH A 33 534 534 HOH HOH . 
L 6 HOH A 34 535 535 HOH HOH . 
L 6 HOH A 35 536 536 HOH HOH . 
L 6 HOH A 36 537 537 HOH HOH . 
L 6 HOH A 37 538 538 HOH HOH . 
L 6 HOH A 38 539 539 HOH HOH . 
L 6 HOH A 39 540 540 HOH HOH . 
L 6 HOH A 40 541 541 HOH HOH . 
L 6 HOH A 41 542 542 HOH HOH . 
L 6 HOH A 42 543 543 HOH HOH . 
L 6 HOH A 43 544 544 HOH HOH . 
L 6 HOH A 44 545 545 HOH HOH . 
L 6 HOH A 45 546 546 HOH HOH . 
L 6 HOH A 46 547 547 HOH HOH . 
L 6 HOH A 47 548 548 HOH HOH . 
L 6 HOH A 48 549 549 HOH HOH . 
L 6 HOH A 49 550 550 HOH HOH . 
L 6 HOH A 50 551 551 HOH HOH . 
L 6 HOH A 51 552 552 HOH HOH . 
L 6 HOH A 52 553 553 HOH HOH . 
L 6 HOH A 53 554 554 HOH HOH . 
L 6 HOH A 54 555 555 HOH HOH . 
L 6 HOH A 55 556 556 HOH HOH . 
L 6 HOH A 56 557 557 HOH HOH . 
L 6 HOH A 57 558 558 HOH HOH . 
L 6 HOH A 58 559 559 HOH HOH . 
L 6 HOH A 59 560 560 HOH HOH . 
L 6 HOH A 60 561 561 HOH HOH . 
L 6 HOH A 61 562 562 HOH HOH . 
L 6 HOH A 62 563 563 HOH HOH . 
L 6 HOH A 63 564 564 HOH HOH . 
L 6 HOH A 64 565 565 HOH HOH . 
L 6 HOH A 65 566 566 HOH HOH . 
L 6 HOH A 66 567 567 HOH HOH . 
L 6 HOH A 67 568 568 HOH HOH . 
L 6 HOH A 68 569 569 HOH HOH . 
L 6 HOH A 69 570 570 HOH HOH . 
L 6 HOH A 70 571 571 HOH HOH . 
L 6 HOH A 71 572 572 HOH HOH . 
L 6 HOH A 72 573 573 HOH HOH . 
L 6 HOH A 73 574 574 HOH HOH . 
L 6 HOH A 74 575 575 HOH HOH . 
L 6 HOH A 75 576 576 HOH HOH . 
L 6 HOH A 76 577 577 HOH HOH . 
L 6 HOH A 77 578 578 HOH HOH . 
L 6 HOH A 78 579 579 HOH HOH . 
L 6 HOH A 79 580 580 HOH HOH . 
L 6 HOH A 80 581 581 HOH HOH . 
L 6 HOH A 81 582 582 HOH HOH . 
L 6 HOH A 82 583 545 HOH HOH . 
M 6 HOH B 1 544 544 HOH HOH . 
M 6 HOH B 2 546 546 HOH HOH . 
M 6 HOH B 3 547 547 HOH HOH . 
M 6 HOH B 4 548 548 HOH HOH . 
M 6 HOH B 5 549 549 HOH HOH . 
M 6 HOH B 6 550 550 HOH HOH . 
M 6 HOH B 7 551 551 HOH HOH . 
M 6 HOH B 8 552 552 HOH HOH . 
M 6 HOH B 9 553 553 HOH HOH . 
M 6 HOH B 10 554 554 HOH HOH . 
M 6 HOH B 11 555 555 HOH HOH . 
M 6 HOH B 12 556 556 HOH HOH . 
M 6 HOH B 13 557 557 HOH HOH . 
M 6 HOH B 14 558 558 HOH HOH . 
M 6 HOH B 15 559 559 HOH HOH . 
M 6 HOH B 16 560 560 HOH HOH . 
M 6 HOH B 17 561 561 HOH HOH . 
M 6 HOH B 18 562 562 HOH HOH . 
M 6 HOH B 19 563 563 HOH HOH . 
M 6 HOH B 20 564 564 HOH HOH . 
M 6 HOH B 21 565 565 HOH HOH . 
M 6 HOH B 22 566 566 HOH HOH . 
M 6 HOH B 23 567 567 HOH HOH . 
M 6 HOH B 24 568 568 HOH HOH . 
M 6 HOH B 25 569 569 HOH HOH . 
M 6 HOH B 26 570 570 HOH HOH . 
M 6 HOH B 27 571 571 HOH HOH . 
M 6 HOH B 28 572 572 HOH HOH . 
M 6 HOH B 29 573 573 HOH HOH . 
M 6 HOH B 30 574 574 HOH HOH . 
M 6 HOH B 31 575 575 HOH HOH . 
M 6 HOH B 32 576 576 HOH HOH . 
M 6 HOH B 33 577 577 HOH HOH . 
M 6 HOH B 34 578 578 HOH HOH . 
M 6 HOH B 35 579 579 HOH HOH . 
M 6 HOH B 36 580 580 HOH HOH . 
M 6 HOH B 37 581 581 HOH HOH . 
M 6 HOH B 38 582 582 HOH HOH . 
M 6 HOH B 39 583 583 HOH HOH . 
M 6 HOH B 40 584 584 HOH HOH . 
M 6 HOH B 41 585 585 HOH HOH . 
M 6 HOH B 42 586 586 HOH HOH . 
M 6 HOH B 43 587 587 HOH HOH . 
M 6 HOH B 44 588 588 HOH HOH . 
M 6 HOH B 45 589 589 HOH HOH . 
M 6 HOH B 46 590 590 HOH HOH . 
M 6 HOH B 47 591 591 HOH HOH . 
M 6 HOH B 48 592 592 HOH HOH . 
M 6 HOH B 49 593 593 HOH HOH . 
M 6 HOH B 50 594 594 HOH HOH . 
M 6 HOH B 51 595 595 HOH HOH . 
M 6 HOH B 52 596 596 HOH HOH . 
M 6 HOH B 53 597 597 HOH HOH . 
M 6 HOH B 54 598 598 HOH HOH . 
M 6 HOH B 55 599 599 HOH HOH . 
M 6 HOH B 56 600 600 HOH HOH . 
M 6 HOH B 57 601 601 HOH HOH . 
M 6 HOH B 58 602 602 HOH HOH . 
M 6 HOH B 59 603 603 HOH HOH . 
M 6 HOH B 60 604 604 HOH HOH . 
M 6 HOH B 61 605 605 HOH HOH . 
M 6 HOH B 62 606 606 HOH HOH . 
M 6 HOH B 63 607 607 HOH HOH . 
M 6 HOH B 64 608 608 HOH HOH . 
M 6 HOH B 65 609 609 HOH HOH . 
M 6 HOH B 66 610 610 HOH HOH . 
M 6 HOH B 67 611 611 HOH HOH . 
M 6 HOH B 68 612 612 HOH HOH . 
M 6 HOH B 69 613 613 HOH HOH . 
M 6 HOH B 70 614 614 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         K 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               -34.015 
_atom_site.Cartn_y               -34.015 
_atom_site.Cartn_z               35.71 
_atom_site.occupancy             0.25 
_atom_site.B_iso_or_equiv        45.96 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           7 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#