data_3E87 # _model_server_result.job_id AlZRzW31q_RCLR61k8Nyxg _model_server_result.datetime_utc '2024-12-23 06:23:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e87 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1}' # _entry.id 3E87 # _exptl.entry_id 3E87 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 362.448 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(1S)-2-amino-1-phenylethyl]-5-(1H-pyrrolo[2,3-b]pyridin-4-yl)thiophene-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3E87 _cell.length_a 117.323 _cell.length_b 117.323 _cell.length_c 45.045 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E87 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,I 1 1 B,D,F,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 163 A LYS 308 1_555 A N TPO 164 A TPO 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C TPO 164 A TPO 309 1_555 A N PHE 165 A PHE 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C ILE 305 A ILE 450 1_555 A N TPO 306 A TPO 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C TPO 306 A TPO 451 1_555 A N PRO 307 A PRO 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale5 B C LYS 163 B LYS 308 1_555 B N TPO 164 B TPO 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 B C TPO 164 B TPO 309 1_555 B N PHE 165 B PHE 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 B C ILE 305 B ILE 450 1_555 B N TPO 306 B TPO 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 B C TPO 306 B TPO 451 1_555 B N PRO 307 B PRO 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? # _chem_comp.formula 'C20 H18 N4 O S' _chem_comp.formula_weight 362.448 _chem_comp.id G95 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(1S)-2-amino-1-phenylethyl]-5-(1H-pyrrolo[2,3-b]pyridin-4-yl)thiophene-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 G95 sing 83 n n C1 N1 G95 sing 84 n n C2 C15 G95 sing 85 n n C2 N2 G95 sing 86 n n C3 C4 G95 sing 87 n n C3 O1 G95 doub 88 n n C3 N2 G95 sing 89 n n C4 C5 G95 doub 90 n y C4 S1 G95 sing 91 n y C5 C6 G95 sing 92 n y C9 C10 G95 doub 93 n y C9 C8 G95 sing 94 n y C10 N3 G95 sing 95 n y C8 C7 G95 sing 96 n y C8 C14 G95 doub 97 n y C7 C6 G95 doub 98 n y C7 S1 G95 sing 99 n y C12 C13 G95 doub 100 n y C12 N4 G95 sing 101 n y C13 C14 G95 sing 102 n y C14 C11 G95 sing 103 n y C15 C16 G95 doub 104 n y C15 C20 G95 sing 105 n y C16 C17 G95 sing 106 n y C17 C18 G95 doub 107 n y C18 C19 G95 sing 108 n y N3 C11 G95 doub 109 n y C19 C20 G95 doub 110 n y C11 N4 G95 sing 111 n y C1 H1 G95 sing 112 n n C1 H1A G95 sing 113 n n C2 H2 G95 sing 114 n n C5 H5 G95 sing 115 n n C9 H9 G95 sing 116 n n C10 H10 G95 sing 117 n n C6 H6 G95 sing 118 n n N1 HN1 G95 sing 119 n n N1 HN1A G95 sing 120 n n C12 H12 G95 sing 121 n n C13 H13 G95 sing 122 n n N2 HN2 G95 sing 123 n n C16 H16 G95 sing 124 n n C17 H17 G95 sing 125 n n C18 H18 G95 sing 126 n n C19 H19 G95 sing 127 n n C20 H20 G95 sing 128 n n N4 HN4 G95 sing 129 n n # _atom_sites.entry_id 3E87 _atom_sites.fract_transf_matrix[1][1] 0.008523 _atom_sites.fract_transf_matrix[1][2] 0.004921 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009842 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 G95 A 1 1 1 G95 G95 . F 3 G95 B 1 1 1 G95 G95 . G 4 HOH A 1 13 13 HOH HOH . G 4 HOH A 2 15 15 HOH HOH . G 4 HOH A 3 17 17 HOH HOH . G 4 HOH A 4 22 22 HOH HOH . G 4 HOH A 5 26 26 HOH HOH . G 4 HOH A 6 28 28 HOH HOH . G 4 HOH A 7 30 30 HOH HOH . G 4 HOH A 8 32 32 HOH HOH . G 4 HOH A 9 36 36 HOH HOH . G 4 HOH A 10 39 39 HOH HOH . G 4 HOH A 11 40 40 HOH HOH . G 4 HOH A 12 41 41 HOH HOH . G 4 HOH A 13 42 42 HOH HOH . G 4 HOH A 14 43 43 HOH HOH . G 4 HOH A 15 44 44 HOH HOH . G 4 HOH A 16 45 45 HOH HOH . G 4 HOH A 17 48 48 HOH HOH . G 4 HOH A 18 49 49 HOH HOH . G 4 HOH A 19 51 51 HOH HOH . G 4 HOH A 20 53 53 HOH HOH . G 4 HOH A 21 54 54 HOH HOH . G 4 HOH A 22 56 56 HOH HOH . G 4 HOH A 23 57 57 HOH HOH . G 4 HOH A 24 58 58 HOH HOH . G 4 HOH A 25 65 65 HOH HOH . G 4 HOH A 26 68 68 HOH HOH . G 4 HOH A 27 69 69 HOH HOH . G 4 HOH A 28 71 71 HOH HOH . G 4 HOH A 29 83 83 HOH HOH . G 4 HOH A 30 84 84 HOH HOH . G 4 HOH A 31 87 87 HOH HOH . G 4 HOH A 32 89 89 HOH HOH . G 4 HOH A 33 92 92 HOH HOH . G 4 HOH A 34 97 97 HOH HOH . G 4 HOH A 35 99 99 HOH HOH . G 4 HOH A 36 104 104 HOH HOH . G 4 HOH A 37 110 110 HOH HOH . G 4 HOH A 38 114 114 HOH HOH . H 4 HOH B 1 14 14 HOH HOH . H 4 HOH B 2 16 16 HOH HOH . H 4 HOH B 3 18 18 HOH HOH . H 4 HOH B 4 19 19 HOH HOH . H 4 HOH B 5 20 20 HOH HOH . H 4 HOH B 6 24 24 HOH HOH . H 4 HOH B 7 25 25 HOH HOH . H 4 HOH B 8 27 27 HOH HOH . H 4 HOH B 9 29 29 HOH HOH . H 4 HOH B 10 31 31 HOH HOH . H 4 HOH B 11 33 33 HOH HOH . H 4 HOH B 12 35 35 HOH HOH . H 4 HOH B 13 37 37 HOH HOH . H 4 HOH B 14 46 46 HOH HOH . H 4 HOH B 15 55 55 HOH HOH . H 4 HOH B 16 59 59 HOH HOH . H 4 HOH B 17 60 60 HOH HOH . H 4 HOH B 18 61 61 HOH HOH . H 4 HOH B 19 62 62 HOH HOH . H 4 HOH B 20 66 66 HOH HOH . H 4 HOH B 21 67 67 HOH HOH . H 4 HOH B 22 70 70 HOH HOH . H 4 HOH B 23 72 72 HOH HOH . H 4 HOH B 24 73 73 HOH HOH . H 4 HOH B 25 74 74 HOH HOH . H 4 HOH B 26 75 75 HOH HOH . H 4 HOH B 27 77 77 HOH HOH . H 4 HOH B 28 79 79 HOH HOH . H 4 HOH B 29 82 82 HOH HOH . H 4 HOH B 30 85 85 HOH HOH . H 4 HOH B 31 91 91 HOH HOH . H 4 HOH B 32 93 93 HOH HOH . H 4 HOH B 33 94 94 HOH HOH . H 4 HOH B 34 96 96 HOH HOH . H 4 HOH B 35 98 98 HOH HOH . H 4 HOH B 36 101 101 HOH HOH . H 4 HOH B 37 108 108 HOH HOH . H 4 HOH B 38 109 109 HOH HOH . H 4 HOH B 39 111 111 HOH HOH . I 4 HOH C 1 23 23 HOH HOH . I 4 HOH C 2 113 113 HOH HOH . J 4 HOH D 1 21 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G95 . . . F 3 26.238 26.628 -1.632 1 47.78 ? C1 G95 1 B 1 HETATM 2 C C2 G95 . . . F 3 26.946 25.314 -1.856 1 47.69 ? C2 G95 1 B 1 HETATM 3 C C3 G95 . . . F 3 29.061 24.478 -1.003 1 45.59 ? C3 G95 1 B 1 HETATM 4 C C4 G95 . . . F 3 29.786 24.095 0.164 1 44.93 ? C4 G95 1 B 1 HETATM 5 C C5 G95 . . . F 3 29.532 24.203 1.515 1 44.61 ? C5 G95 1 B 1 HETATM 6 C C9 G95 . . . F 3 33.272 22.513 3.286 1 43.05 ? C9 G95 1 B 1 HETATM 7 C C10 G95 . . . F 3 34.478 21.951 3.635 1 43.03 ? C10 G95 1 B 1 HETATM 8 C C8 G95 . . . F 3 32.87 22.54 1.969 1 43.27 ? C8 G95 1 B 1 HETATM 9 C C7 G95 . . . F 3 31.624 23.148 1.553 1 44.19 ? C7 G95 1 B 1 HETATM 10 C C6 G95 . . . F 3 30.586 23.664 2.304 1 44.37 ? C6 G95 1 B 1 HETATM 11 S S1 G95 . . . F 3 31.292 23.34 -0.117 1 43.83 ? S1 G95 1 B 1 HETATM 12 O O1 G95 . . . F 3 29.525 24.306 -2.125 1 45.95 ? O1 G95 1 B 1 HETATM 13 N N1 G95 . . . F 3 27.281 27.665 -1.445 1 47.87 ? N1 G95 1 B 1 HETATM 14 C C12 G95 . . . F 3 34.945 21.137 -0.67 1 42.88 ? C12 G95 1 B 1 HETATM 15 C C13 G95 . . . F 3 33.773 21.774 -0.352 1 42.91 ? C13 G95 1 B 1 HETATM 16 C C14 G95 . . . F 3 33.746 21.975 1.054 1 43.11 ? C14 G95 1 B 1 HETATM 17 C C15 G95 . . . F 3 25.941 24.222 -2.002 1 47.95 ? C15 G95 1 B 1 HETATM 18 N N2 G95 . . . F 3 27.836 25.047 -0.752 1 46.72 ? N2 G95 1 B 1 HETATM 19 C C16 G95 . . . F 3 25.697 23.675 -3.242 1 48.06 ? C16 G95 1 B 1 HETATM 20 C C17 G95 . . . F 3 24.769 22.668 -3.383 1 48.03 ? C17 G95 1 B 1 HETATM 21 C C18 G95 . . . F 3 24.084 22.203 -2.284 1 47.8 ? C18 G95 1 B 1 HETATM 22 N N3 G95 . . . F 3 35.353 21.398 2.796 1 43.07 ? N3 G95 1 B 1 HETATM 23 C C19 G95 . . . F 3 24.327 22.749 -1.045 1 47.88 ? C19 G95 1 B 1 HETATM 24 C C20 G95 . . . F 3 25.253 23.757 -0.902 1 47.92 ? C20 G95 1 B 1 HETATM 25 C C11 G95 . . . F 3 34.925 21.44 1.536 1 43.1 ? C11 G95 1 B 1 HETATM 26 N N4 G95 . . . F 3 35.638 20.942 0.485 1 42.94 ? N4 G95 1 B 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 26 #