data_3E88 # _model_server_result.job_id bwO1WDxv_NIL9is1XHCw_Q _model_server_result.datetime_utc '2024-11-15 05:57:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1}' # _entry.id 3E88 # _exptl.entry_id 3E88 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 461.516 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[2-(4-amino-1,2,5-oxadiazol-3-yl)-6-{[(2R)-2-amino-3-phenylpropyl]oxy}-1-ethyl-1H-imidazo[4,5-c]pyridin-4-yl]-2-methylbut-3-yn-2-ol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3E88 _cell.length_a 116.885 _cell.length_b 116.885 _cell.length_c 45.115 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G 1 1 B,D,F,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 163 A LYS 308 1_555 A N TPO 164 A TPO 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C TPO 164 A TPO 309 1_555 A N PHE 165 A PHE 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C ILE 305 A ILE 450 1_555 A N TPO 306 A TPO 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 B C LYS 163 B LYS 308 1_555 B N TPO 164 B TPO 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 B C TPO 164 B TPO 309 1_555 B N PHE 165 B PHE 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 B C ILE 305 B ILE 450 1_555 B N TPO 306 B TPO 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C24 H27 N7 O3' _chem_comp.formula_weight 461.516 _chem_comp.id G96 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[2-(4-amino-1,2,5-oxadiazol-3-yl)-6-{[(2R)-2-amino-3-phenylpropyl]oxy}-1-ethyl-1H-imidazo[4,5-c]pyridin-4-yl]-2-methylbut-3-yn-2-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C9 G96 doub 83 n y N1 O2 G96 sing 84 n y N3 C8 G96 sing 85 n n C4 C5 G96 doub 86 n y C4 C3 G96 sing 87 n y C5 C6 G96 sing 88 n y C6 C1 G96 doub 89 n y C7 O1 G96 sing 90 n n C7 C23 G96 sing 91 n n C8 C9 G96 sing 92 n y C8 N2 G96 doub 93 n y C10 N4 G96 doub 94 n y C10 C11 G96 sing 95 n y C10 O1 G96 sing 96 n n C13 C17 G96 trip 97 n n C13 C12 G96 sing 98 n n C15 C14 G96 sing 99 n y C15 N5 G96 sing 100 n y C15 C11 G96 doub 101 n y C17 C18 G96 sing 102 n n C20 C18 G96 sing 103 n n C21 C22 G96 sing 104 n n C21 N5 G96 sing 105 n n C24 C23 G96 sing 106 n n C24 C1 G96 sing 107 n n O3 C18 G96 sing 108 n n C18 C19 G96 sing 109 n n C12 N4 G96 sing 110 n y C12 C14 G96 doub 111 n y C14 N6 G96 sing 112 n y N6 C16 G96 doub 113 n y C16 N5 G96 sing 114 n y C16 C9 G96 sing 115 n y O2 N2 G96 sing 116 n y C23 N7 G96 sing 117 n n C1 C2 G96 sing 118 n y C3 C2 G96 doub 119 n y N3 HN3 G96 sing 120 n n N3 HN3A G96 sing 121 n n C4 H4 G96 sing 122 n n C5 H5 G96 sing 123 n n C6 H6 G96 sing 124 n n C7 H7 G96 sing 125 n n C7 H7A G96 sing 126 n n C20 H20 G96 sing 127 n n C20 H20A G96 sing 128 n n C20 H20B G96 sing 129 n n C21 H21 G96 sing 130 n n C21 H21A G96 sing 131 n n C22 H22 G96 sing 132 n n C22 H22A G96 sing 133 n n C22 H22B G96 sing 134 n n C24 H24 G96 sing 135 n n C24 H24A G96 sing 136 n n O3 HO3 G96 sing 137 n n C19 H19 G96 sing 138 n n C19 H19A G96 sing 139 n n C19 H19B G96 sing 140 n n C11 H11 G96 sing 141 n n C23 H23 G96 sing 142 n n N7 HN7 G96 sing 143 n n N7 HN7A G96 sing 144 n n C3 H3 G96 sing 145 n n C2 H2 G96 sing 146 n n # _atom_sites.entry_id 3E88 _atom_sites.fract_transf_matrix[1][1] 0.008555 _atom_sites.fract_transf_matrix[1][2] 0.004939 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009879 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022166 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 G96 A 1 1 1 G96 G96 . F 3 G96 B 1 1 1 G96 G96 . G 4 HOH A 1 3 3 HOH HOH . G 4 HOH A 2 4 4 HOH HOH . G 4 HOH A 3 6 6 HOH HOH . G 4 HOH A 4 9 9 HOH HOH . G 4 HOH A 5 11 11 HOH HOH . G 4 HOH A 6 13 13 HOH HOH . G 4 HOH A 7 15 15 HOH HOH . G 4 HOH A 8 17 17 HOH HOH . G 4 HOH A 9 18 18 HOH HOH . G 4 HOH A 10 20 20 HOH HOH . G 4 HOH A 11 23 23 HOH HOH . G 4 HOH A 12 24 24 HOH HOH . G 4 HOH A 13 25 25 HOH HOH . G 4 HOH A 14 29 29 HOH HOH . G 4 HOH A 15 30 30 HOH HOH . G 4 HOH A 16 33 33 HOH HOH . G 4 HOH A 17 37 37 HOH HOH . G 4 HOH A 18 38 38 HOH HOH . G 4 HOH A 19 39 39 HOH HOH . G 4 HOH A 20 40 40 HOH HOH . G 4 HOH A 21 46 46 HOH HOH . G 4 HOH A 22 50 50 HOH HOH . G 4 HOH A 23 51 51 HOH HOH . G 4 HOH A 24 52 52 HOH HOH . G 4 HOH A 25 53 53 HOH HOH . G 4 HOH A 26 55 55 HOH HOH . G 4 HOH A 27 60 60 HOH HOH . G 4 HOH A 28 65 65 HOH HOH . G 4 HOH A 29 66 66 HOH HOH . G 4 HOH A 30 69 69 HOH HOH . H 4 HOH B 1 5 5 HOH HOH . H 4 HOH B 2 7 7 HOH HOH . H 4 HOH B 3 8 8 HOH HOH . H 4 HOH B 4 10 10 HOH HOH . H 4 HOH B 5 12 12 HOH HOH . H 4 HOH B 6 14 14 HOH HOH . H 4 HOH B 7 16 16 HOH HOH . H 4 HOH B 8 19 19 HOH HOH . H 4 HOH B 9 21 21 HOH HOH . H 4 HOH B 10 22 22 HOH HOH . H 4 HOH B 11 26 26 HOH HOH . H 4 HOH B 12 27 27 HOH HOH . H 4 HOH B 13 28 28 HOH HOH . H 4 HOH B 14 31 31 HOH HOH . H 4 HOH B 15 32 32 HOH HOH . H 4 HOH B 16 34 34 HOH HOH . H 4 HOH B 17 35 35 HOH HOH . H 4 HOH B 18 41 41 HOH HOH . H 4 HOH B 19 42 42 HOH HOH . H 4 HOH B 20 43 43 HOH HOH . H 4 HOH B 21 45 45 HOH HOH . H 4 HOH B 22 47 47 HOH HOH . H 4 HOH B 23 48 48 HOH HOH . H 4 HOH B 24 49 49 HOH HOH . H 4 HOH B 25 56 56 HOH HOH . H 4 HOH B 26 58 58 HOH HOH . H 4 HOH B 27 59 59 HOH HOH . H 4 HOH B 28 61 61 HOH HOH . H 4 HOH B 29 67 67 HOH HOH . H 4 HOH B 30 70 70 HOH HOH . H 4 HOH B 31 72 72 HOH HOH . I 4 HOH D 1 36 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 G96 . . . F 3 -25.31 10.919 -4.345 1 34.4 ? N1 G96 1 B 1 HETATM 2 N N3 G96 . . . F 3 -23.835 12.747 -1.664 1 34.3 ? N3 G96 1 B 1 HETATM 3 C C4 G96 . . . F 3 -34.229 11.734 0.438 1 35.73 ? C4 G96 1 B 1 HETATM 4 C C5 G96 . . . F 3 -33.505 10.985 -0.491 1 35.68 ? C5 G96 1 B 1 HETATM 5 C C6 G96 . . . F 3 -33.155 9.67 -0.201 1 35.7 ? C6 G96 1 B 1 HETATM 6 C C7 G96 . . . F 3 -30.98 8.577 2.333 1 35.09 ? C7 G96 1 B 1 HETATM 7 C C8 G96 . . . F 3 -24.18 12.167 -2.838 1 34.32 ? C8 G96 1 B 1 HETATM 8 C C10 G96 . . . F 3 -29.335 9.221 0.64 1 34.32 ? C10 G96 1 B 1 HETATM 9 C C13 G96 . . . F 3 -26.947 11.416 2.065 1 34.32 ? C13 G96 1 B 1 HETATM 10 C C15 G96 . . . F 3 -27.809 9.909 -1.089 1 34.28 ? C15 G96 1 B 1 HETATM 11 C C17 G96 . . . F 3 -26.274 11.955 2.894 1 34.37 ? C17 G96 1 B 1 HETATM 12 C C20 G96 . . . F 3 -26.024 14.079 4.096 1 34.36 ? C20 G96 1 B 1 HETATM 13 C C21 G96 . . . F 3 -27.679 9.346 -3.499 1 34.28 ? C21 G96 1 B 1 HETATM 14 C C22 G96 . . . F 3 -28.82 10.107 -4.138 1 34.3 ? C22 G96 1 B 1 HETATM 15 C C24 G96 . . . F 3 -33.146 7.684 1.34 1 35.41 ? C24 G96 1 B 1 HETATM 16 O O3 G96 . . . F 3 -26.076 11.989 5.279 1 33.89 ? O3 G96 1 B 1 HETATM 17 C C18 G96 . . . F 3 -25.633 12.603 4.063 1 34.38 ? C18 G96 1 B 1 HETATM 18 C C19 G96 . . . F 3 -24.116 12.445 3.985 1 33.99 ? C19 G96 1 B 1 HETATM 19 C C12 G96 . . . F 3 -27.561 10.707 1.176 1 34.31 ? C12 G96 1 B 1 HETATM 20 N N4 G96 . . . F 3 -28.65 9.98 1.536 1 34.4 ? N4 G96 1 B 1 HETATM 21 C C14 G96 . . . F 3 -27.122 10.684 -0.151 1 34.25 ? C14 G96 1 B 1 HETATM 22 N N6 G96 . . . F 3 -26.096 11.286 -0.791 1 34.21 ? N6 G96 1 B 1 HETATM 23 C C16 G96 . . . F 3 -26.182 10.87 -2.071 1 34.42 ? C16 G96 1 B 1 HETATM 24 N N5 G96 . . . F 3 -27.217 10.031 -2.284 1 34.38 ? N5 G96 1 B 1 HETATM 25 C C9 G96 . . . F 3 -25.26 11.304 -3.049 1 34.36 ? C9 G96 1 B 1 HETATM 26 O O2 G96 . . . F 3 -24.183 11.616 -4.914 1 34.39 ? O2 G96 1 B 1 HETATM 27 N N2 G96 . . . F 3 -23.462 12.409 -3.956 1 34.37 ? N2 G96 1 B 1 HETATM 28 C C11 G96 . . . F 3 -28.919 9.177 -0.685 1 34.29 ? C11 G96 1 B 1 HETATM 29 O O1 G96 . . . F 3 -30.438 8.488 1.012 1 34.39 ? O1 G96 1 B 1 HETATM 30 C C23 G96 . . . F 3 -32.191 7.657 2.533 1 35 ? C23 G96 1 B 1 HETATM 31 N N7 G96 . . . F 3 -31.745 6.293 2.748 1 34.98 ? N7 G96 1 B 1 HETATM 32 C C1 G96 . . . F 3 -33.531 9.105 1.017 1 35.58 ? C1 G96 1 B 1 HETATM 33 C C3 G96 . . . F 3 -34.603 11.171 1.654 1 35.66 ? C3 G96 1 B 1 HETATM 34 C C2 G96 . . . F 3 -34.251 9.855 1.945 1 35.69 ? C2 G96 1 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 411 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #