data_3E8B # _model_server_result.job_id TQB0HrETnwNnIvZkseMIgw _model_server_result.datetime_utc '2025-08-30 23:58:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e8b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":10}' # _entry.id 3E8B # _exptl.entry_id 3E8B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 85.468 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RUBIDIUM ION' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3E8B _cell.length_a 68.134 _cell.length_b 68.134 _cell.length_c 89.359 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E8B _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,R 1 1,2,3,4 B,K,L,M,N,O,P,Q,S 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -68.134 -68.134 0 3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -68.134 0 0 4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -68.134 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N # _chem_comp.formula 'Rb 1' _chem_comp.formula_weight 85.468 _chem_comp.id RB _chem_comp.mon_nstd_flag . _chem_comp.name 'RUBIDIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3E8B _atom_sites.fract_transf_matrix[1][1] 0.014677 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014677 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011191 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD A 1 501 501 MPD MPD . D 2 MPD A 1 504 504 MPD MPD . E 3 RB A 1 2 2 RB RB . F 3 RB A 1 3 3 RB RB . G 3 RB A 1 4 4 RB RB . H 3 RB A 1 6 6 RB RB . I 3 RB A 1 9 9 RB RB . J 3 RB A 1 10 10 RB RB . K 2 MPD B 1 502 502 MPD MPD . L 2 MPD B 1 503 503 MPD MPD . M 3 RB B 1 1 1 RB RB . N 3 RB B 1 5 5 RB RB . O 3 RB B 1 7 7 RB RB . P 3 RB B 1 8 8 RB RB . Q 3 RB B 1 11 11 RB RB . R 4 HOH A 1 505 505 HOH HOH . R 4 HOH A 2 506 506 HOH HOH . R 4 HOH A 3 507 507 HOH HOH . R 4 HOH A 4 508 508 HOH HOH . R 4 HOH A 5 509 509 HOH HOH . R 4 HOH A 6 510 510 HOH HOH . R 4 HOH A 7 511 511 HOH HOH . R 4 HOH A 8 512 512 HOH HOH . R 4 HOH A 9 513 513 HOH HOH . R 4 HOH A 10 514 514 HOH HOH . R 4 HOH A 11 515 515 HOH HOH . R 4 HOH A 12 516 516 HOH HOH . R 4 HOH A 13 517 517 HOH HOH . R 4 HOH A 14 518 518 HOH HOH . R 4 HOH A 15 519 519 HOH HOH . R 4 HOH A 16 520 520 HOH HOH . R 4 HOH A 17 521 521 HOH HOH . R 4 HOH A 18 522 522 HOH HOH . R 4 HOH A 19 523 523 HOH HOH . R 4 HOH A 20 524 524 HOH HOH . R 4 HOH A 21 525 525 HOH HOH . R 4 HOH A 22 526 526 HOH HOH . R 4 HOH A 23 527 527 HOH HOH . R 4 HOH A 24 528 528 HOH HOH . R 4 HOH A 25 529 529 HOH HOH . R 4 HOH A 26 530 530 HOH HOH . R 4 HOH A 27 531 531 HOH HOH . R 4 HOH A 28 532 532 HOH HOH . R 4 HOH A 29 533 533 HOH HOH . R 4 HOH A 30 534 534 HOH HOH . R 4 HOH A 31 535 535 HOH HOH . R 4 HOH A 32 536 536 HOH HOH . R 4 HOH A 33 537 537 HOH HOH . R 4 HOH A 34 538 538 HOH HOH . R 4 HOH A 35 539 539 HOH HOH . R 4 HOH A 36 540 540 HOH HOH . R 4 HOH A 37 541 541 HOH HOH . R 4 HOH A 38 542 542 HOH HOH . R 4 HOH A 39 543 543 HOH HOH . R 4 HOH A 40 544 544 HOH HOH . R 4 HOH A 41 545 545 HOH HOH . R 4 HOH A 42 546 546 HOH HOH . R 4 HOH A 43 547 547 HOH HOH . R 4 HOH A 44 548 548 HOH HOH . R 4 HOH A 45 549 549 HOH HOH . R 4 HOH A 46 550 550 HOH HOH . R 4 HOH A 47 551 551 HOH HOH . R 4 HOH A 48 552 552 HOH HOH . R 4 HOH A 49 553 553 HOH HOH . R 4 HOH A 50 554 554 HOH HOH . S 4 HOH B 1 504 504 HOH HOH . S 4 HOH B 2 505 505 HOH HOH . S 4 HOH B 3 506 506 HOH HOH . S 4 HOH B 4 507 507 HOH HOH . S 4 HOH B 5 508 508 HOH HOH . S 4 HOH B 6 509 509 HOH HOH . S 4 HOH B 7 510 510 HOH HOH . S 4 HOH B 8 511 511 HOH HOH . S 4 HOH B 9 512 512 HOH HOH . S 4 HOH B 10 513 513 HOH HOH . S 4 HOH B 11 514 514 HOH HOH . S 4 HOH B 12 515 515 HOH HOH . S 4 HOH B 13 516 516 HOH HOH . S 4 HOH B 14 517 517 HOH HOH . S 4 HOH B 15 518 518 HOH HOH . S 4 HOH B 16 519 519 HOH HOH . S 4 HOH B 17 520 520 HOH HOH . S 4 HOH B 18 521 521 HOH HOH . S 4 HOH B 19 522 522 HOH HOH . S 4 HOH B 20 523 523 HOH HOH . S 4 HOH B 21 524 524 HOH HOH . S 4 HOH B 22 525 525 HOH HOH . S 4 HOH B 23 526 526 HOH HOH . S 4 HOH B 24 527 527 HOH HOH . S 4 HOH B 25 528 528 HOH HOH . S 4 HOH B 26 529 529 HOH HOH . S 4 HOH B 27 530 530 HOH HOH . S 4 HOH B 28 531 531 HOH HOH . S 4 HOH B 29 532 532 HOH HOH . S 4 HOH B 30 534 534 HOH HOH . S 4 HOH B 31 535 535 HOH HOH . S 4 HOH B 32 536 536 HOH HOH . S 4 HOH B 33 537 537 HOH HOH . S 4 HOH B 34 538 538 HOH HOH . S 4 HOH B 35 539 539 HOH HOH . S 4 HOH B 36 540 540 HOH HOH . S 4 HOH B 37 541 541 HOH HOH . S 4 HOH B 38 542 542 HOH HOH . S 4 HOH B 39 543 543 HOH HOH . S 4 HOH B 40 544 544 HOH HOH . S 4 HOH B 41 545 545 HOH HOH . S 4 HOH B 42 546 546 HOH HOH . S 4 HOH B 43 547 547 HOH HOH . S 4 HOH B 44 548 548 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol RB _atom_site.label_atom_id RB _atom_site.label_comp_id RB _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x -34.067 _atom_site.Cartn_y -34.067 _atom_site.Cartn_z 7.09 _atom_site.occupancy 0.25 _atom_site.B_iso_or_equiv 97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id RB _atom_site.auth_comp_id RB _atom_site.auth_seq_id 10 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 611 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #