data_3E8D # _model_server_result.job_id 2OZsOlSEql6dSm4bxCgoYQ _model_server_result.datetime_utc '2024-11-04 23:03:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e8d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1}' # _entry.id 3E8D # _exptl.entry_id 3E8D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 463.532 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[2-(4-amino-2,5-dihydro-1,2,5-oxadiazol-3-yl)-6-{[(1S)-3-amino-1-phenylpropyl]oxy}-1-ethyl-1H-imidazo[4,5-c]pyridin-4-yl]-2-methylbut-3-yn-2-ol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3E8D _cell.length_a 116.823 _cell.length_b 116.823 _cell.length_c 45.102 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E8D _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G 1 1 B,D,F,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 163 A LYS 308 1_555 A N TPO 164 A TPO 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C TPO 164 A TPO 309 1_555 A N PHE 165 A PHE 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C LYS 163 B LYS 308 1_555 B N TPO 164 B TPO 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 B C TPO 164 B TPO 309 1_555 B N PHE 165 B PHE 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C24 H29 N7 O3' _chem_comp.formula_weight 463.532 _chem_comp.id G98 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[2-(4-amino-2,5-dihydro-1,2,5-oxadiazol-3-yl)-6-{[(1S)-3-amino-1-phenylpropyl]oxy}-1-ethyl-1H-imidazo[4,5-c]pyridin-4-yl]-2-methylbut-3-yn-2-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3E8D _atom_sites.fract_transf_matrix[1][1] 0.00856 _atom_sites.fract_transf_matrix[1][2] 0.004942 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009884 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022172 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 G98 A 1 1 1 G98 G98 . F 3 G98 B 1 1 1 G98 G98 . G 4 HOH A 1 7 7 HOH HOH . G 4 HOH A 2 8 8 HOH HOH . G 4 HOH A 3 13 13 HOH HOH . G 4 HOH A 4 14 14 HOH HOH . G 4 HOH A 5 19 19 HOH HOH . G 4 HOH A 6 20 20 HOH HOH . G 4 HOH A 7 22 22 HOH HOH . G 4 HOH A 8 23 23 HOH HOH . G 4 HOH A 9 25 25 HOH HOH . G 4 HOH A 10 26 26 HOH HOH . G 4 HOH A 11 28 28 HOH HOH . G 4 HOH A 12 31 31 HOH HOH . G 4 HOH A 13 32 32 HOH HOH . G 4 HOH A 14 33 33 HOH HOH . G 4 HOH A 15 44 44 HOH HOH . G 4 HOH A 16 54 54 HOH HOH . G 4 HOH A 17 57 57 HOH HOH . G 4 HOH A 18 59 59 HOH HOH . H 4 HOH B 1 3 3 HOH HOH . H 4 HOH B 2 6 6 HOH HOH . H 4 HOH B 3 9 9 HOH HOH . H 4 HOH B 4 10 10 HOH HOH . H 4 HOH B 5 11 11 HOH HOH . H 4 HOH B 6 12 12 HOH HOH . H 4 HOH B 7 15 15 HOH HOH . H 4 HOH B 8 16 16 HOH HOH . H 4 HOH B 9 17 17 HOH HOH . H 4 HOH B 10 18 18 HOH HOH . H 4 HOH B 11 21 21 HOH HOH . H 4 HOH B 12 34 34 HOH HOH . H 4 HOH B 13 35 35 HOH HOH . H 4 HOH B 14 36 36 HOH HOH . H 4 HOH B 15 39 39 HOH HOH . H 4 HOH B 16 45 45 HOH HOH . H 4 HOH B 17 49 49 HOH HOH . H 4 HOH B 18 52 52 HOH HOH . H 4 HOH B 19 55 55 HOH HOH . H 4 HOH B 20 58 58 HOH HOH . I 4 HOH D 1 24 24 HOH HOH . I 4 HOH D 2 37 37 HOH HOH . I 4 HOH D 3 40 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 G98 . . . F 3 -5.324 -37.802 1.514 1 29.96 ? N1 G98 1 B 1 HETATM 2 N N3 G98 . . . F 3 -3.082 -39.245 -1.024 1 29.99 ? N3 G98 1 B 1 HETATM 3 C C4 G98 . . . F 3 -3.56 -39.31 -2.278 1 29.91 ? C4 G98 1 B 1 HETATM 4 C C5 G98 . . . F 3 -4.07 -38.687 -0.295 1 29.89 ? C5 G98 1 B 1 HETATM 5 C C6 G98 . . . F 3 -5.135 -38.425 -1.161 1 29.88 ? C6 G98 1 B 1 HETATM 6 C C7 G98 . . . F 3 -5.675 -38.712 -3.582 1 29.89 ? C7 G98 1 B 1 HETATM 7 C C8 G98 . . . F 3 -5.339 -37.492 -4.408 1 30.18 ? C8 G98 1 B 1 HETATM 8 C C10 G98 . . . F 3 -1.49 -40.353 -3.18 1 29.92 ? C10 G98 1 B 1 HETATM 9 C C13 G98 . . . F 3 -1.468 -39.018 3.834 1 30.83 ? C13 G98 1 B 1 HETATM 10 C C15 G98 . . . F 3 -0.843 -40.402 3.693 1 30.82 ? C15 G98 1 B 1 HETATM 11 C C17 G98 . . . F 3 -9.797 -36.365 1.498 1 31.64 ? C17 G98 1 B 1 HETATM 12 C C20 G98 . . . F 3 -8.54 -35.071 -1.494 1 31.15 ? C20 G98 1 B 1 HETATM 13 C C21 G98 . . . F 3 -8.244 -33.859 -2.106 1 31.27 ? C21 G98 1 B 1 HETATM 14 C C22 G98 . . . F 3 -7.733 -32.804 -1.356 1 31.26 ? C22 G98 1 B 1 HETATM 15 C C24 G98 . . . F 3 -7.813 -34.167 0.624 1 31.23 ? C24 G98 1 B 1 HETATM 16 O O2 G98 . . . F 3 -2.15 -38.948 5.091 1 30.65 ? O2 G98 1 B 1 HETATM 17 C C14 G98 . . . F 3 -0.39 -37.94 3.813 1 30.84 ? C14 G98 1 B 1 HETATM 18 C C12 G98 . . . F 3 -2.416 -38.773 2.731 1 30.4 ? C12 G98 1 B 1 HETATM 19 C C11 G98 . . . F 3 -3.237 -38.587 1.898 1 29.96 ? C11 G98 1 B 1 HETATM 20 C C3 G98 . . . F 3 -4.186 -38.363 1.057 1 29.89 ? C3 G98 1 B 1 HETATM 21 C C1 G98 . . . F 3 -6.371 -37.535 0.703 1 29.96 ? C1 G98 1 B 1 HETATM 22 O O3 G98 . . . F 3 -7.487 -36.963 1.266 1 30.24 ? O3 G98 1 B 1 HETATM 23 C C16 G98 . . . F 3 -8.633 -36.515 0.533 1 31.27 ? C16 G98 1 B 1 HETATM 24 C C19 G98 . . . F 3 -8.327 -35.224 -0.125 1 31.21 ? C19 G98 1 B 1 HETATM 25 C C23 G98 . . . F 3 -7.517 -32.955 0.009 1 31.19 ? C23 G98 1 B 1 HETATM 26 C C18 G98 . . . F 3 -10.275 -37.749 1.921 1 32.16 ? C18 G98 1 B 1 HETATM 27 N N7 G98 . . . F 3 -11.093 -37.645 3.112 1 32.91 ? N7 G98 1 B 1 HETATM 28 C C2 G98 . . . F 3 -6.29 -37.847 -0.653 1 29.88 ? C2 G98 1 B 1 HETATM 29 N N2 G98 . . . F 3 -4.804 -38.817 -2.403 1 29.93 ? N2 G98 1 B 1 HETATM 30 C C9 G98 . . . F 3 -2.779 -39.838 -3.321 1 29.98 ? C9 G98 1 B 1 HETATM 31 N N6 G98 . . . F 3 -0.775 -40.411 -2.028 1 29.88 ? N6 G98 1 B 1 HETATM 32 N N5 G98 . . . F 3 -0.974 -40.804 -4.341 1 29.93 ? N5 G98 1 B 1 HETATM 33 O O1 G98 . . . F 3 -2.059 -40.533 -5.241 1 29.93 ? O1 G98 1 B 1 HETATM 34 N N4 G98 . . . F 3 -3.197 -39.927 -4.602 1 29.97 ? N4 G98 1 B 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #